Metagenome / Metatranscriptome Family F053444

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F053444
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	61 residues
Representative Sequence	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCIVTEVDPAPDAENYSGKIVCRLP
Number of Associated Samples	114
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	14.89 %
% of genes near scaffold ends (potentially truncated)	25.53 %
% of genes from short scaffolds (< 2000 bps)	87.23 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.142 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.149 % of family members)
Environment Ontology (ENVO)	Unclassified (30.496 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.773 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 42.70% Coil/Unstructured: 57.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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SCOP family	SCOP domain	Representative PDB	TM-score
b.53.1.1: Ribosomal protein L25-like	d1dfup_	1dfu	0.64
b.53.1.1: Ribosomal protein L25-like	d1feua_	1feu	0.64
b.53.1.1: Ribosomal protein L25-like	d1dfup_	1dfu	0.64
b.53.1.1: Ribosomal protein L25-like	d1feua_	1feu	0.64
d.113.1.2: Nudix	d1hzta1	1hzt	0.63
d.113.1.1: Nudix	d1vhza1	1vhz	0.63
b.53.1.0: Ribosomal protein L25-like	d5bnza2	5bnz	0.63
d.113.1.2: Nudix	d1hzta1	1hzt	0.63
d.113.1.1: Nudix	d1vhza1	1vhz	0.63
b.53.1.0: Ribosomal protein L25-like	d5bnza2	5bnz	0.63

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF07730	HisKA_3	14.18
PF02518	HATPase_c	13.48
PF01594	AI-2E_transport	9.93
PF01263	Aldose_epim	2.84
PF00282	Pyridoxal_deC	2.13
PF10646	Germane	2.13
PF02754	CCG	1.42
PF13302	Acetyltransf_3	1.42
PF02322	Cyt_bd_oxida_II	0.71
PF04237	YjbR	0.71
PF07690	MFS_1	0.71
PF07883	Cupin_2	0.71
PF01654	Cyt_bd_oxida_I	0.71
PF03706	LPG_synthase_TM	0.71
PF03631	Virul_fac_BrkB	0.71
PF08279	HTH_11	0.71
PF06897	DUF1269	0.71
PF02646	RmuC	0.71
PF03795	YCII	0.71
PF00149	Metallophos	0.71
PF13662	Toprim_4	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	14.18
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	14.18
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	14.18
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	14.18
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	9.93
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	2.84
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	2.84
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	2.13
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	1.42
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	1.42
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.71
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.71
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.71
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.71
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	0.71
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.71
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.71
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.14 %
Unclassified	root	N/A	19.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.14 %
Unclassified	root	N/A	19.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.14 %
Unclassified	root	N/A	19.86 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.05 %
Unclassified	root	N/A	19.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	72.34 %
Unclassified	root	N/A	19.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10.64 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	9.93 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	6.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.86 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	9.93 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	6.38 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.26 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.42 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.71 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.71 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.71 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.86 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	6.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.26 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.42 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.71 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.71 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.71 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.71 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.86 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	6.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.26 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.71 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.71 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.71 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.71 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.71 %
Dactylosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium	0.71 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.86 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	6.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.26 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.71 %
Actinoplanes utahensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes utahensis	0.71 %
Microbacterium ulmi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium ulmi	0.71 %
Rhodococcus hoagii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus hoagii	0.71 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.71 %
Dactylosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium	0.71 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.86 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	6.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.26 %
Pseudonocardia sp. MH-G8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. MH-G8	0.71 %
Actinoplanes utahensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes utahensis	0.71 %
Microbacterium ulmi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium ulmi	0.71 %
Rhodococcus hoagii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus hoagii	0.71 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.71 %
Dactylosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium	0.71 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig509800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	924	Open in IMG/M
3300000041\|ARcpr5oldR_c026632	Not Available	533	Open in IMG/M
3300000550\|F24TB_10458091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1152	Open in IMG/M
3300000956\|JGI10216J12902_100266028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1294	Open in IMG/M
3300000956\|JGI10216J12902_101601760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2151	Open in IMG/M
3300000956\|JGI10216J12902_104045409	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300000956\|JGI10216J12902_105203947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1222	Open in IMG/M
3300000956\|JGI10216J12902_109000540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1063	Open in IMG/M
3300004114\|Ga0062593_100121627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1904	Open in IMG/M
3300004156\|Ga0062589_102225315	Not Available	562	Open in IMG/M
3300004479\|Ga0062595_101124640	Not Available	689	Open in IMG/M
3300004643\|Ga0062591_102438531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	549	Open in IMG/M
3300005093\|Ga0062594_100833939	Not Available	859	Open in IMG/M
3300005093\|Ga0062594_102917548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium ulmi	533	Open in IMG/M
3300005093\|Ga0062594_102937783	Not Available	531	Open in IMG/M
3300005146\|Ga0066817_1021717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	594	Open in IMG/M
3300005166\|Ga0066674_10018274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3004	Open in IMG/M
3300005168\|Ga0066809_10029473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1154	Open in IMG/M
3300005329\|Ga0070683_100052556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3775	Open in IMG/M
3300005329\|Ga0070683_100070674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3256	Open in IMG/M
3300005329\|Ga0070683_100127992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2402	Open in IMG/M
3300005356\|Ga0070674_100538911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300005549\|Ga0070704_101005611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300005564\|Ga0070664_101582756	Not Available	621	Open in IMG/M
3300005618\|Ga0068864_102275477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300005713\|Ga0066905_100002147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	7217	Open in IMG/M
3300005713\|Ga0066905_100038575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2804	Open in IMG/M
3300005713\|Ga0066905_100297270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1266	Open in IMG/M
3300005713\|Ga0066905_100772463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	831	Open in IMG/M
3300005713\|Ga0066905_101836238	Not Available	560	Open in IMG/M
3300005718\|Ga0068866_11105670	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005764\|Ga0066903_102462361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1007	Open in IMG/M
3300005937\|Ga0081455_10016850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7027	Open in IMG/M
3300006175\|Ga0070712_100783663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	817	Open in IMG/M
3300006575\|Ga0074053_11822462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	937	Open in IMG/M
3300006575\|Ga0074053_11907714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	736	Open in IMG/M
3300006577\|Ga0074050_11900128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	847	Open in IMG/M
3300006604\|Ga0074060_11559869	Not Available	578	Open in IMG/M
3300006806\|Ga0079220_12122868	Not Available	503	Open in IMG/M
3300006844\|Ga0075428_100323950	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300006844\|Ga0075428_100790148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1009	Open in IMG/M
3300006846\|Ga0075430_101024580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300006853\|Ga0075420_100207065	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300006854\|Ga0075425_100132685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2848	Open in IMG/M
3300006854\|Ga0075425_101037225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	935	Open in IMG/M
3300006871\|Ga0075434_100318324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1576	Open in IMG/M
3300006881\|Ga0068865_102104044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300006954\|Ga0079219_10209513	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300007076\|Ga0075435_100373770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1224	Open in IMG/M
3300009098\|Ga0105245_11262405	Not Available	787	Open in IMG/M
3300009100\|Ga0075418_10101654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3053	Open in IMG/M
3300009137\|Ga0066709_101163919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1135	Open in IMG/M
3300009147\|Ga0114129_11984809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	704	Open in IMG/M
3300009162\|Ga0075423_10403842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1434	Open in IMG/M
3300009818\|Ga0105072_1068935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	687	Open in IMG/M
3300009840\|Ga0126313_10722153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	808	Open in IMG/M
3300009840\|Ga0126313_10823501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	756	Open in IMG/M
3300010038\|Ga0126315_11092243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus hoagii	538	Open in IMG/M
3300010047\|Ga0126382_10072860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2113	Open in IMG/M
3300010358\|Ga0126370_11395919	Not Available	661	Open in IMG/M
3300010359\|Ga0126376_12006203	Not Available	620	Open in IMG/M
3300010362\|Ga0126377_10934729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes utahensis	931	Open in IMG/M
3300010362\|Ga0126377_11354864	All Organisms → cellular organisms → Bacteria → Terrabacteria group	784	Open in IMG/M
3300010371\|Ga0134125_10388571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1548	Open in IMG/M
3300010373\|Ga0134128_10353102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1643	Open in IMG/M
3300010373\|Ga0134128_13182101	Not Available	504	Open in IMG/M
3300010375\|Ga0105239_13387663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	518	Open in IMG/M
3300011107\|Ga0151490_1052186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300012022\|Ga0120191_10135460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300012198\|Ga0137364_10254793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1297	Open in IMG/M
3300012200\|Ga0137382_10040084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2869	Open in IMG/M
3300012208\|Ga0137376_11271854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	626	Open in IMG/M
3300012350\|Ga0137372_10940844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	608	Open in IMG/M
3300012355\|Ga0137369_10606088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	761	Open in IMG/M
3300012358\|Ga0137368_10303855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1077	Open in IMG/M
3300012948\|Ga0126375_10198448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1315	Open in IMG/M
3300012948\|Ga0126375_10918171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	705	Open in IMG/M
3300012951\|Ga0164300_10868154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
3300012955\|Ga0164298_11680481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300012960\|Ga0164301_11467547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M
3300012971\|Ga0126369_10646083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1132	Open in IMG/M
3300012972\|Ga0134077_10242354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300012984\|Ga0164309_11290591	Not Available	617	Open in IMG/M
3300012986\|Ga0164304_10151769	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300012987\|Ga0164307_10762604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	765	Open in IMG/M
3300012989\|Ga0164305_10694171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	831	Open in IMG/M
3300013096\|Ga0157307_1142001	Not Available	551	Open in IMG/M
3300014969\|Ga0157376_11050513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	839	Open in IMG/M
3300015372\|Ga0132256_100551620	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300015372\|Ga0132256_103035679	Not Available	564	Open in IMG/M
3300015374\|Ga0132255_105222963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	550	Open in IMG/M
3300017657\|Ga0134074_1058477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1306	Open in IMG/M
3300018028\|Ga0184608_10012197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2952	Open in IMG/M
3300018054\|Ga0184621_10015227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2287	Open in IMG/M
3300018067\|Ga0184611_1080369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1118	Open in IMG/M
3300018073\|Ga0184624_10235668	Not Available	820	Open in IMG/M
3300018073\|Ga0184624_10246615	Not Available	800	Open in IMG/M
3300018073\|Ga0184624_10382256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	627	Open in IMG/M
3300018075\|Ga0184632_10090254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1340	Open in IMG/M
3300018081\|Ga0184625_10280189	Not Available	872	Open in IMG/M
3300018081\|Ga0184625_10565299	Not Available	563	Open in IMG/M
3300019356\|Ga0173481_10141527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	982	Open in IMG/M
3300019361\|Ga0173482_10572101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300019362\|Ga0173479_10059488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1286	Open in IMG/M
3300019869\|Ga0193705_1075166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	660	Open in IMG/M
3300019884\|Ga0193741_1001948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5920	Open in IMG/M
3300019884\|Ga0193741_1017652	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300021445\|Ga0182009_10306675	Not Available	801	Open in IMG/M
3300022534\|Ga0224452_1041466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1353	Open in IMG/M
3300022756\|Ga0222622_11344196	Not Available	526	Open in IMG/M
3300025899\|Ga0207642_10277427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	963	Open in IMG/M
3300025899\|Ga0207642_10489653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300025915\|Ga0207693_11165871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	582	Open in IMG/M
3300025916\|Ga0207663_11635629	Not Available	518	Open in IMG/M
3300025920\|Ga0207649_10737705	Not Available	766	Open in IMG/M
3300025935\|Ga0207709_10365320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1094	Open in IMG/M
3300025937\|Ga0207669_10306787	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300025942\|Ga0207689_10666581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium	877	Open in IMG/M
3300025944\|Ga0207661_10035486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3886	Open in IMG/M
3300025944\|Ga0207661_10237355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1616	Open in IMG/M
3300025945\|Ga0207679_10341160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1303	Open in IMG/M
3300027288\|Ga0208525_1005015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1379	Open in IMG/M
3300027560\|Ga0207981_1035221	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300027577\|Ga0209874_1035906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1339	Open in IMG/M
3300027775\|Ga0209177_10087048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	966	Open in IMG/M
3300027821\|Ga0209811_10251280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	675	Open in IMG/M
3300027909\|Ga0209382_10388277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1556	Open in IMG/M
3300028720\|Ga0307317_10334118	Not Available	512	Open in IMG/M
3300028768\|Ga0307280_10207293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300028787\|Ga0307323_10167650	Not Available	793	Open in IMG/M
3300028799\|Ga0307284_10177541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	831	Open in IMG/M
3300028803\|Ga0307281_10107000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	946	Open in IMG/M
3300028810\|Ga0307294_10019538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1771	Open in IMG/M
3300028876\|Ga0307286_10024062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1977	Open in IMG/M
3300028876\|Ga0307286_10175200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. MH-G8	774	Open in IMG/M
3300028878\|Ga0307278_10017518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3320	Open in IMG/M
3300028881\|Ga0307277_10467562	Not Available	565	Open in IMG/M
3300031152\|Ga0307501_10129170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300031170\|Ga0307498_10001423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3555	Open in IMG/M
3300031226\|Ga0307497_10386068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	665	Open in IMG/M
3300031547\|Ga0310887_10884528	Not Available	565	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.31%
Host-Associated	Host-Associated	22.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.50%
Plants	Host-Associated → Plants	22.70%
Aquatic	Environmental → Aquatic	7.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.31%
Sediment	Environmental → Aquatic → Sediment	7.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.38%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.74%
Loam	Environmental → Terrestrial → Soil → Loam	11.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.96%
Sand	Environmental → Terrestrial → Soil → Sand	1.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.42%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.26%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.15%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.09%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.26%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.13%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.13%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.42%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.42%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.42%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.42%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.71%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.71%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_12983380	2124908045	Soil	VQRFTVTIEGPGWKDLQDVELPRAPDEGETIETRYGTCVVTRVDYEPSTNNYSGKIVCRL
ARcpr5oldR_0266322	3300000041	Arabidopsis Rhizosphere	VQRYSVTIQGPGWEDLQDVELPRPPAEGDAIETRYGTCIVTEVDEAPNADSYSGKITCRLPG*
F24TB_104580911	3300000550	Soil	VQRFAVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCIVTKVDPAPGGENYSGKITCRLPG*
JGI10216J12902_1002660282	3300000956	Soil	VQRFAVTIQGPGWEDLQDIELPRAPAEGDSIETRYGTCIVTKVDPAPGGDNYSGKITCRLPG*
JGI10216J12902_1016017602	3300000956	Soil	MTRIQRFIVTIEGPGWEDVQDVELPRAPREGDPIETHYGTCIVTKVDSLASAEGFGGKITCRLP*
JGI10216J12902_1040454094	3300000956	Soil	VQRFAVTIQGPGWEDLQDVELPRAPTEGDAIETRYGTCIVTKVDPASDGENYSGKIVCRLP*
JGI10216J12902_1052039473	3300000956	Soil	VQRFAVTIQGPGWEDLQDVELPRAPAEGDAIETRYGTCIVTKVDSAQDAENYSGKITCRLPG*
JGI10216J12902_1090005402	3300000956	Soil	VQRFTVTIEGPGWKDLQDVELPRAPDEGETIETRYGTCVVTRVDYEPSTNNYSGKIVCRLP*
Ga0062593_1001216272	3300004114	Soil	VQRFSVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDPAPDAENYSGKIICRLPG*
Ga0062589_1022253151	3300004156	Soil	VQRFTVTIEGPGWQDLQDVELPRAPAEGDTIETRYGTCVVSNVEETPGADKYNGKIFCRLP*
Ga0062595_1011246402	3300004479	Soil	MQRFAVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTKVDPEPDAQSYSGKIVCRLP*
Ga0062591_1024385312	3300004643	Soil	VQRFSVTIQGPGWEDLQDVELPRAPGEGDAIETRYGTCIVTEVDPAPDAENYSGKIVCRLPG*
Ga0062594_1008339392	3300005093	Soil	MVTIEGPTWQDIQDMELPRAPALGESIETRYGTCVVTKVEPSSGAEKYAGKIVCRLP*
Ga0062594_1029175482	3300005093	Soil	MVTIEGPSWQDIQDMELPRAPALGGSIETRYGTCVVTKVEPSAQAEKYAGKIV
Ga0062594_1029377831	3300005093	Soil	PLVGKRARCDDWRVQRFSVTIQGPGWEDLQDVELPRPPAEGDTLETRYGTCIVTKVDESPNADSYAGKITCRLPG*
Ga0066817_10217171	3300005146	Soil	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDPAPDTENYSGKIVCRLPG*
Ga0066674_100182743	3300005166	Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCVVTKVDLEPGAENYSGKITCRLPG*
Ga0066809_100294733	3300005168	Soil	VQRFAVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDSAPDAENYSGKITCRLPG*
Ga0070683_1000525565	3300005329	Corn Rhizosphere	MVTIEGPSWQDIQDMELPRAPALGGSIETRYGTCVVTKVEPSAQAEKYAGKIVCRLP*
Ga0070683_1000706745	3300005329	Corn Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTKVAPAPDGQSYSGKIICRLPG*
Ga0070683_1001279923	3300005329	Corn Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRPPAEGDTLETRYGTCIVTKVDESPNADSYAGKITCRLPG*
Ga0070674_1005389112	3300005356	Miscanthus Rhizosphere	MVTIEGPTWQDIQDMELPRAPALGESIETRYGTCVVTKVEPSSGAEKYTGKIVCRLP*
Ga0070704_1010056112	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VLRFAVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDPAPDAENYSGKIICRLPG*
Ga0070664_1015827561	3300005564	Corn Rhizosphere	IEGPSWQDIQDMELPRAPALGGSIETRYGTCVVTKVEPSAQAEKYAGKIVCRLP*
Ga0068864_1022754773	3300005618	Switchgrass Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRPPAEGDTLETRYGTCIVTKVDESPNADSYAGKIT
Ga0066905_1000021473	3300005713	Tropical Forest Soil	MQRYAVTIQGPGWEDLQDVELPRAPTEGDAIETRYGTCIVTKVDTESDGQNYSGKITCRLPG*
Ga0066905_1000385752	3300005713	Tropical Forest Soil	VQRFFVTIQGPGWEDIQDVELPRAPGEGDPIETRYGTCLVTKVEPAPAAQNYAAKITCRLP*
Ga0066905_1002972703	3300005713	Tropical Forest Soil	VQRFSVTIEGQGWEDLQDVELPRAPVEGDSIETRYGTCLVTKVEPSPDADTYAGKIVCRLP*
Ga0066905_1007724632	3300005713	Tropical Forest Soil	VQRYSVTIEGPGGWQDLQDVELPRPPVEGDAIETRYGTCIVTEVESAPDTEAYNGKIVCRLP*
Ga0066905_1018362382	3300005713	Tropical Forest Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDTIETRYGTCLVTKVDLEPNADSYSGKITCRLPG*
Ga0068866_111056702	3300005718	Miscanthus Rhizosphere	MVTIEGPTWQDIQDMELPRAPALGESIETRYGTCVVTKVEPSGGAEKYTGKIVCRLP*
Ga0066903_1024623613	3300005764	Tropical Forest Soil	VQRYSVTIQGPGWEDLQDVELPRPPAEGDAIETRYGTCLVTKVDVEPNADSYSGKITCRLPG*
Ga0081455_100168502	3300005937	Tabebuia Heterophylla Rhizosphere	VILTIKGPGWEDLQDAELARLPAEGDPIETPYGTCIVTQSEATPQAETYAGKVVCRLPG*
Ga0070712_1007836633	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDPAPDAENYSGKIVCRLPG*
Ga0074053_118224621	3300006575	Soil	VQRFAVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTKVDSAPDAESYSGKITCRLPG*
Ga0074053_119077142	3300006575	Soil	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDAAPDAENYSGKIVCRLPG*
Ga0074050_119001283	3300006577	Soil	VQRFAVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDSAPDAENYSGKIICRLPG*
Ga0074060_115598692	3300006604	Soil	VQRFAVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTKVDSASDAESYSGKITCRLPG*
Ga0079220_121228682	3300006806	Agricultural Soil	VQRFTVTIEGPGWQDLQDVELPRAPAEGDTIETRYGTCVVSNVEETPGADKYDGKIFCRLP*
Ga0075428_1003239502	3300006844	Populus Rhizosphere	MVTIEGPTWKDLQDMELPKAPAEGDSIETRYGTCIVTEVEVFPKAESYSGKIVCRLP*
Ga0075428_1007901482	3300006844	Populus Rhizosphere	MVTIEGPGGWKDLQDLELARLPVVGDTIETRYGTCIVTEVDSAPDTQSYSGKIVCRLP*
Ga0075430_1010245801	3300006846	Populus Rhizosphere	QRFMVTIEGPTWKDLQDMELPKPPAEGDSIETRYGTCIVTEVEVFPKAESYSGKIVCRLP
Ga0075420_1002070653	3300006853	Populus Rhizosphere	MVTIEGPTWKDLQDMELPKPPAEGDSIETRYGTCIVTEVEVFPKAESYSGKIVCRLP*
Ga0075425_1001326853	3300006854	Populus Rhizosphere	VQRFAVTIEGQGWVDLQDVELPRPPEEGDAIETRYGTCLVTKVDLEPNADSYSGKITCRLPG*
Ga0075425_1010372253	3300006854	Populus Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDSAPDAENYSGKIICRLPG*
Ga0075434_1003183243	3300006871	Populus Rhizosphere	VQRFAVTIEGQGWVDLQDVELPRPPEEGDAIETRYGTCLVTKVDLEPNADSYSGKITCR
Ga0068865_1021040441	3300006881	Miscanthus Rhizosphere	VLRFAVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDPAPDAENYSGKIIC
Ga0079219_102095133	3300006954	Agricultural Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCLVTKVDAAPDAESYSGKITCRLPG*
Ga0075435_1003737703	3300007076	Populus Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCVVTKVDPAPDADNYSGKITCRLPG*
Ga0105245_112624052	3300009098	Miscanthus Rhizosphere	MVTIEGPGWEDIQDLELPRAPGEGDAIETRYGTCLVTKVDEAAAADAYSGKIVCRLP*
Ga0075418_101016543	3300009100	Populus Rhizosphere	VQRFMVTIEGPGGWKDLQDLELARLPVVGDTIETRYGTCIVTEVDSAPDTQSYSGKIVCRLP*
Ga0066709_1011639192	3300009137	Grasslands Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCVVTKVDLAPGAENYSGKITCRLPG*
Ga0114129_119848092	3300009147	Populus Rhizosphere	VQRFAVTIQGPGWEDLQDVELPRAPAEGDTIETRYGTCLVTKVDPAPDAESYSGKITCRLPG*
Ga0075423_104038422	3300009162	Populus Rhizosphere	VQRFAVTIQGPGWEDLQDWEMPRAPAEGDAIETRYGTCVVTKVDPAPDADNYSGKITCRLPG*
Ga0105072_10689352	3300009818	Groundwater Sand	MIARGQRSCDHGLIQRFIITIEGTGWEDLQDVELPRPPGEGEPIETQYGTCIVTRVESLPNAGQYDGKIVCRLP*
Ga0126313_107221532	3300009840	Serpentine Soil	VVARACDHGRIQRFMVTIEGPGWEDVQVVELPRPPAEGEPIETQYGTCIVVKVDPLTSLENYSAKIVCRLP*
Ga0126313_108235013	3300009840	Serpentine Soil	MIGRVQRFAVTIQGTGWEDLQDVELPRAPAEGDSIETRYGTCIVTKVDLAPGAENYSGKITCRLPG*
Ga0126315_110922432	3300010038	Serpentine Soil	VQRFIVTIEGPSWQDVQDMELPRAPALGESIETRYGTCVVTKVEATARAEKYAGRIVCRLP*
Ga0126382_100728602	3300010047	Tropical Forest Soil	VQRFSVTIEGQGWEDLQDVELPRAPVEGDSIETRYGTCLVTKVEPSPDADTYAGKIV*
Ga0126370_113959191	3300010358	Tropical Forest Soil	VQRYSVTIQGPGWQDLQDVELPRAPDEGDTIETRYGTCLVTKVDPSPDADTYAGKIVCRLP*
Ga0126376_120062032	3300010359	Tropical Forest Soil	VQRYSVTIQGPGWEDLQDVELPRAPVEGDSIETRYGTCLVTKVDPSPDADTYAGKIVCRLP*
Ga0126377_109347292	3300010362	Tropical Forest Soil	MQRYAVTIQGPGWEDLQDVELPRAPTEGDAIETRYGTCIVTKVDTASDGQSYSGKITCRLPG*
Ga0126377_113548643	3300010362	Tropical Forest Soil	VQRFSVTIEGQGWEDLQDVELPRAPVEGDSIETRYGTCLVTKVDPSPDADTY
Ga0134125_103885712	3300010371	Terrestrial Soil	MVTIEGPGWEDIQDLELPRAPAEGDAIETHYGTCLVTKVDEAAATDNYSGKIRCRLP*
Ga0134128_103531022	3300010373	Terrestrial Soil	MVTIEGPGWEDIQDLELPRAPAEGDAIETRYGTCLVTKVDEAAAADTYSAKIFCRLP*
Ga0134128_131821011	3300010373	Terrestrial Soil	VQRFSVTIEGPGWQDLQDVELPRAPAEGDAIETRYGTCLVTKVEKTQAEQYSGKIVCR
Ga0105239_133876632	3300010375	Corn Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRAPAEGDAIETRYGTCIVTEVDPAPDAENYSGKIICRLPG
Ga0151490_10521861	3300011107	Soil	VQRFTVTIEGPTWQDIQDMELPRAPALGETIETRYGTCVVTKVEAPAEAESYTGKIVCRLP*
Ga0120191_101354603	3300012022	Terrestrial	GPGWEDLQDVELPRAPAEGDSIETRYGTCIVTKVDPAPGGDNYSGKITCRLPG*
Ga0137364_102547932	3300012198	Vadose Zone Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCIVTEVDPASDAENYSGKTVCRLP*
Ga0137382_100400844	3300012200	Vadose Zone Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCIVTEVDPAPDAENYSGKIVCRLP*
Ga0137376_112718542	3300012208	Vadose Zone Soil	VQRFAVTIQGPGWEDLQDVELPRAPGEGDAIETRYGTCIVTEVDPAPDAENYSGKIICRLPG*
Ga0137372_109408443	3300012350	Vadose Zone Soil	VQRFAVTIQGPGWEDLQDVELLRAPAEGDSIETRYGTCVVTEVDSAPDAENYSGKIVCRLP*
Ga0137369_106060882	3300012355	Vadose Zone Soil	MVTIEGPGWEDFQDMELPRPPSEGEPLETQYGKCIVTKVDPYPGSESYSGKIVCRLP*
Ga0137368_103038553	3300012358	Vadose Zone Soil	LGRPRCDDWRVQRFAVTIQGPGWEDLQDLELPRAPAEGDAIETRYGTCVVTKVDPAPDADNYSGKIICRLPG*
Ga0126375_101984482	3300012948	Tropical Forest Soil	VQNFAVVIQGLGWEDVQDIELLRAPSEGDLIETRYGTCIVTKVELVPDASHTGRITCRLP
Ga0126375_109181711	3300012948	Tropical Forest Soil	TIEGPGGWQDLQDVELPRPPVEGDAIETRYGTCIVTEVESAPDTEAYNGKIVCRLP*
Ga0164300_108681543	3300012951	Soil	VQRFAVTIQGPGGEDLQDVELPRAPSEGDAIETRYGTCIVTEVDSAPDAENYSGKIICRLPG*
Ga0164298_116804812	3300012955	Soil	VQRFSVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTEVDSAPDAENYSGKIICRLPG*
Ga0164301_114675473	3300012960	Soil	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDAAPDAENYSGKI
Ga0126369_106460833	3300012971	Tropical Forest Soil	VQRYLVTIQGAGWEDLQDVELPREPEDGDAIETRYGTCLVTTVEPSPDADTYAGKIVCRLP*
Ga0134077_102423542	3300012972	Grasslands Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCVVTKVDLEPGAENYSGKIVCRLP*
Ga0164309_112905913	3300012984	Soil	VKRARCDDWRVQRFAVTIQGPGWEDLQDVELPRAPDEGDAIETRYGTCIVTKVDSAQDAENYSGKITCRLPG*
Ga0164304_101517691	3300012986	Soil	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDAAPDAENYSGKIVC
Ga0164307_107626041	3300012987	Soil	VQRFAVTIQGPGWEDLQDVELPRAPGEGDAIETRYGTCIVTEVDPAPDAENY
Ga0164305_106941713	3300012989	Soil	VQRFAVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDSAPDAENYSGKIICRRPG*
Ga0157307_11420011	3300013096	Soil	IEGPGWQDLQDVELPRAPAEGDAIETRYGTCLVTKVEKTQAEQYSGKIVCRLP*
Ga0157376_110505131	3300014969	Miscanthus Rhizosphere	VQRFAVTIQGPGWEDLQDVELPRPPAEGDTLETRYGTCIVTKVDESPNADSYAGKITCRLPG*
Ga0132256_1005516202	3300015372	Arabidopsis Rhizosphere	MVTIEGPGWEDIQDLELPRAPAEGDAIETRYGTCLVTKVDEAAAADAYSGKIVCRLP*
Ga0132256_1030356792	3300015372	Arabidopsis Rhizosphere	MQRFAVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTKVDSAPDAESYSGKITCRLPG*
Ga0132255_1052229631	3300015374	Arabidopsis Rhizosphere	GPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDPAPDAENYSGKIVCRLPG*
Ga0134074_10584773	3300017657	Grasslands Soil	RRPRCDDCRVQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCVVTKVDLEPGAENYSGKITCRLPG
Ga0184608_100121973	3300018028	Groundwater Sediment	VQRFSVTIQGPGWEDLQDIELPRAPSEGDAIETRYGTCLVTEVDSAPDAENYSGKIICRLPG
Ga0184621_100152271	3300018054	Groundwater Sediment	VQRFSVTIQGPGWEDLQDIELPRAPSEGDAIETRYGTCLVTEVDSAPDAENYSGKI
Ga0184611_10803693	3300018067	Groundwater Sediment	VQRFSVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDSAPDAENYSGKIICRLPG
Ga0184624_102356683	3300018073	Groundwater Sediment	MQRFAVTIQGPGWEDLQDVELPRAPAEGDAIETRYGTCIVTKVDSAQDAENYSGKITCRLPG
Ga0184624_102466152	3300018073	Groundwater Sediment	MVTIEGPGWEDIQDLELPRAPAEGDAIETRYGTCLVTRVDEAAAADTYSAKIFCRLP
Ga0184624_103822563	3300018073	Groundwater Sediment	QGPGWEDLQDIELPRAPSEGDAIETRYGTCLVTEVDSAPDAENYSGKIICRLPG
Ga0184632_100902542	3300018075	Groundwater Sediment	VQRFSVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCLVTEVDSAPDAENYSGKIICRLPG
Ga0184625_102801892	3300018081	Groundwater Sediment	MQRFAVTIQGPGWEDLQDVELPRAPAEGDAIETRYGTCIVTKVDSAQDAENYSGKISCRRPG
Ga0184625_105652992	3300018081	Groundwater Sediment	VLRFSVTIQGPSWEDVQDVELPRAPAVGDSIETRYGTCVVTEFDPAPDAENYSGKIICRLPG
Ga0173481_101415271	3300019356	Soil	MVTIEGPGWEDIQDLELPRAPGEGDALETRYGTCLVTKVDEAADMDKYSGKIFCRLP
Ga0173482_105721012	3300019361	Soil	VQRFSVTIEGPGWQDLQDVELPRAPAEGDAIETRYGTCLVTKVEKTQAEQYS
Ga0173479_100594882	3300019362	Soil	VQRFSVTIEGPGWQDLQDVELPRAPAEGDAIETRYGTCLVTKVEKTQAEQYSGKIVCRLP
Ga0193705_10751663	3300019869	Soil	TIQGPGWEDLQDIELPRAPSEGDAIETRYGTCIVTEVDPAPDAENYSGKIICRLPG
Ga0193741_10019482	3300019884	Soil	MVTIEGPTWKDLQDMELPKAPGEGDSIETRYGTCIVTKVEVFPKAESYSGKIVCRLP
Ga0193741_10176523	3300019884	Soil	LRRSLPCHHGLVQRFMVTIEGPTWTDLQDMELPKAPGEGDSIETRYGTCIVTKVEVFPKAESYSGKIICRLP
Ga0182009_103066752	3300021445	Soil	VQRFSVTIEGPGWQDLQDVELPRAPAEGDAIETRYGTCLVTKVEETQAEQYSGKIVCRLP
Ga0224452_10414663	3300022534	Groundwater Sediment	VQRFSVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDPAPDAENYSGKIICRLPG
Ga0222622_113441961	3300022756	Groundwater Sediment	PGWQDVQDLELPRAPTEGDAIETRYGTCVVTKVDEAAEMDKYSGKIFCRLP
Ga0207642_102774272	3300025899	Miscanthus Rhizosphere	MVTIEGPTWQDIQDMELPRAPALGESIETRYGTCVVTKVEPSGGAEKYTGKIA
Ga0207642_104896532	3300025899	Miscanthus Rhizosphere	VLRFAVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDPAPDAENYSGKIICRLPG
Ga0207693_111658712	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDPAPDAENYSGKIVCRLPG
Ga0207663_116356293	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	WRVHRFAVTIQGPGWEDLQDMELPRAPAEGDSIETRYGTCLVTKVDLEPDGENYSAKITCRLPG
Ga0207649_107377052	3300025920	Corn Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTKVAPAPDGQSYSGKIICRLPG
Ga0207709_103653202	3300025935	Miscanthus Rhizosphere	MVTIEGPTWQDIQDMELPRAPALGESIETRYGTCVVTKVEPSGGAEKYTGKIVCRLP
Ga0207669_103067871	3300025937	Miscanthus Rhizosphere	MVTIEGPTWQDIQDMELPRAPALGESIETRYGTCVVTKVEPSSGAEKYTGKIVCRLP
Ga0207689_106665811	3300025942	Miscanthus Rhizosphere	VQRFSVTIEGPGWQDLQDVELPRAPADGDAIETRYGTCLVTKVEETQAEQYSGKIVCRLP
Ga0207661_100354862	3300025944	Corn Rhizosphere	MVTIEGPSWQDIQDMELPRAPALGGSIETRYGTCVVTKVEPSAQAEKYAGKIVCRLP
Ga0207661_102373553	3300025944	Corn Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRPPAEGDTLETRYGTCIVTKVDESPNADSYAGKITCRLPG
Ga0207679_103411603	3300025945	Corn Rhizosphere	VQRFSVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTKVAPAPDGQSYSGKIICR
Ga0208525_10050154	3300027288	Soil	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDAAPDAENYTGKIVCRLPG
Ga0207981_10352212	3300027560	Soil	VQRFAVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDSAPDAENYSGKITCRLPG
Ga0209874_10359062	3300027577	Groundwater Sand	MIARGQRSCDHGLIQRFIITIEGTGWEDLQDVELPRPPGEGEPIETQYGTCIVTRVESLPNAGQYDGKIVCRLP
Ga0209177_100870483	3300027775	Agricultural Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCLVTKVDAAPDAESYSGKITCRLPG
Ga0209811_102512801	3300027821	Surface Soil	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDAAPDAENYSGKIVCRLPG
Ga0209382_103882772	3300027909	Populus Rhizosphere	MVTIEGPTWKDLQDMELPKPPAEGDSIETRYGTCIVTEVEVFPKAESYSGKIVCRLP
Ga0307317_103341182	3300028720	Soil	RRLVDVQRFMVMIDGPGWQDVQDLELPRAPTEGDAIETRYGTCVVTKVDEAAEMDKYSGKIFCRLP
Ga0307280_102072933	3300028768	Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCVVTEVDLAPDGENYSGKIICRLPG
Ga0307323_101676501	3300028787	Soil	MIDGPGWQDVQDLELPRAPTEGDAIETRYGTCVVTKVDEAAEMDKYSGKIFCRLP
Ga0307284_101775413	3300028799	Soil	RFSVTIQGPGWEDLQDVELPRAPSEGDAIETRYGTCIVTEVDPAPDAENYSGKIICRLPG
Ga0307281_101070001	3300028803	Soil	VQRFSVTIQGPGWEDLQDIELPRAPSEGDAIETRYGTCLVTEVDSAPDAENYSGK
Ga0307294_100195383	3300028810	Soil	VQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCVVTEVDLAPDGENY
Ga0307286_100240624	3300028876	Soil	RCDDCRVQRFSVTIQGPGWEDLQDVELPRAPAEGDSIETRYGTCVVTEVDLAPDGENYSGKIICRLPG
Ga0307286_101752002	3300028876	Soil	MVMIDGPGWQDVQDLELPRAPTEGDAIETRYGTCVVTKVDEAAEMDKYSGKIFCRLP
Ga0307278_100175185	3300028878	Soil	VQRFAVTIQGPGWEDLQDVELPRAPDEGDAIETRYGTCIVTKVDSAQDAENYSGKITCRLPG
Ga0307277_104675623	3300028881	Soil	PGWEDLQDVELPRAPSEGDSIETRYGTCVVTKVDSAPNAESYSGKITCRLPG
Ga0307501_101291702	3300031152	Soil	VQRFAVTIQGPGWEDLQDVELPRAPGEGDAIETRYGTCIVTEVDAAPDAENYSGKIICRLPG
Ga0307498_100014234	3300031170	Soil	VQRFSVTIQGPGWEDLQDIELPRAPAEGDALETRYGTCIVTEVDPAPDAENYSGKIICRLPG
Ga0307497_103860682	3300031226	Soil	VQRFSVTIQGPGWEDLQDMELPRAPAEGDSIETRYGTCLVTEVEPEPDGENYSAKITCRLPG
Ga0310887_108845282	3300031547	Soil	VQRFAVTIQGPGWEDLQDVELPRAPSEGDSIETRYGTCIVTKVDSAPDAESYSGKITCRLPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053444

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences