Metagenome / Metatranscriptome Family F053291

Basic Information
Family ID	F053291
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	46 residues
Representative Sequence	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Number of Associated Samples	97
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	78.72 %
% of genes near scaffold ends (potentially truncated)	34.75 %
% of genes from short scaffolds (< 2000 bps)	69.50 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (39.007 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (25.532 % of family members)
Environment Ontology (ENVO)	Unclassified (54.610 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (63.121 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 12199999997 2M3P_101703723 3JGI12421J11937_100080682 4JGI12421J11937_1001002913 5JGI12421J11937_100468574 6JGI12421J11937_101804643 7FwDRAFT_1009005910 8B570J40625_10000093437 9B570J40625_1002627398 10JGI25917J50250_10093488 11JGI25922J50271_1000794111 12JGI25914J50564_100246427 13JGI25923J51411_10030819 14JGI25923J51411_10225544 15JGI25925J51416_100304994 16JGI25930J51415_10141134 17Ga0063233_100671655 18Ga0066179_102421752 19Ga0007756_116065533 20Ga0070374_100692932 21Ga0070374_102254563 22Ga0070374_105059111 23Ga0070374_105534054 24Ga0070374_105534393 25Ga0049085_100869363 26Ga0078894_101819747 27Ga0078894_104674355 28Ga0078894_107699681 29Ga0078894_108930292 30Ga0078894_109221942 31Ga0078894_109804223 32Ga0078894_111133733 33Ga0078894_112672141 34Ga0078894_116251413 35Ga0073913_100019887 36Ga0070743_1000115122 37Ga0070744_101259614 38Ga0070744_101608483 39Ga0070744_101633352 40Ga0102853_10088532 41Ga0102873_10333643 42Ga0102874_10068886 43Ga0102880_10684883 44Ga0102880_11377144 45Ga0102819_10145621 46Ga0102903_10074642 47Ga0102901_10043262 48Ga0102865_10401892 49Ga0102876_10145451 50Ga0105736_10325242 51Ga0105746_10665933 52Ga0105746_11611693 53Ga0114336_10664732 54Ga0102831_11000472 55Ga0102892_10681673 56Ga0102854_10978173 57Ga0114980_1000025436 58Ga0114968_100200984 59Ga0114977_1000019651 60Ga0114979_1000122946 61Ga0114979_100685921 62Ga0114969_104038992 63Ga0114974_100653501 64Ga0114982_100417315 65Ga0133913_108294671 66Ga0133913_121344143 67Ga0133913_132598181 68Ga0136709_10468732 69Ga0157476_1034992 70Ga0157203_100000927 71Ga0157203_10111751 72Ga0164293_104032623 73Ga0164293_107630541 74Ga0164292_108238724 75Ga0164294_105969073 76Ga0170791_157198481 77Ga0181365_11325931 78Ga0181359_10038407 79Ga0181359_10625521 80Ga0181359_10831433 81Ga0181359_11137061 82Ga0211736_101810142 83Ga0211736_103078023 84Ga0211734_109577673 85Ga0211734_111022152 86Ga0211735_115514977 87Ga0211731_117506611 88Ga0208050_100295310 89Ga0208050_10049681 90Ga0194048_100155483 91Ga0194059_12733882 92Ga0222714_100129313 93Ga0222713_104739672 94Ga0244775_10000125132 95Ga0244775_1000837810 96Ga0244775_100948573 97Ga0244775_101465582 98Ga0244775_105718955 99Ga0244775_108709652 100Ga0244776_104287882 101Ga0244776_106569673 102Ga0244776_107239283 103Ga0255071_10636363 104Ga0255066_10149345 105Ga0255064_10341743 106Ga0208929_10743971 107Ga0208679_10831531 108Ga0255077_10205531 109Ga0255077_10533023 110Ga0209651_10385533 111Ga0208133_11082451 112Ga0208975_11497663 113Ga0209769_11972251 114Ga0209551_12177982 115Ga0209033_100301828 116Ga0209599_1000369714 117Ga0209617_101084615 118Ga0209297_1000035101 119Ga0209296_100731018 120Ga0209088_10000029154 121Ga0209770_1000215320 122Ga0209770_100313579 123Ga0209086_100243033 124Ga0209500_101044976 125Ga0209500_101420701 126Ga0209107_102660302 127Ga0209353_100751817 128Ga0247723_100158213 129Ga0247723_10386584 130Ga0315905_103039154 131Ga0334981_0014698_4251_4385 132Ga0334979_0005420_780_926 133Ga0334979_0360847_671_811 134Ga0334987_0110430_297_443 135Ga0334995_0589536_1_132 136Ga0334990_0553653_419_565 137Ga0335020_0026828_2222_2368 138Ga0335012_0031258_2_142 139Ga0335035_0315554_319_465 140Ga0335058_0567154_498_638 141Ga0335060_0104074_2_121
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 12199999997 2JGI12421J11937_100080682 3Ga0070374_105534393 4Ga0078894_107699681
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 12199999997 2JGI12421J11937_100080682 3Ga0070374_105534393 4Ga0078894_107699681
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.92% β-sheet: 4.17% Coil/Unstructured: 47.92%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF06067	DUF932	10.64
PF13186	SPASM	0.71
PF00255	GSHPx	0.71
PF00041	fn3	0.71
PF00011	HSP20	0.71
PF02467	Whib	0.71
PF13640	2OG-FeII_Oxy_3	0.71
PF14579	HHH_6	0.71
PF01583	APS_kinase	0.71
PF14279	HNH_5	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	Defense mechanisms [V]	0.71
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	0.71

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.21 %
Unclassified	root	N/A	29.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	1.42 %
Unclassified	root	N/A	29.79 %
Viruses	superkingdom	All Organisms → Viruses	68.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.42 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	39.01 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Unclassified	root	N/A	29.79 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	39.01 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.42 %
Unclassified	root	N/A	29.79 %

Name	Rank	Taxonomy	Distribution
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Unclassified	root	N/A	29.79 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	39.01 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	39.01 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Unclassified	root	N/A	29.79 %

Name	Rank	Taxonomy	Distribution
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.42 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	35.46 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Unclassified	root	N/A	29.79 %

Name	Rank	Taxonomy	Distribution
Aphanizomenonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.71 %
Unclassified	root	N/A	29.79 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	35.46 %

Name	Rank	Taxonomy	Distribution
Aphanizomenon	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.71 %
Unclassified	root	N/A	29.79 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	35.46 %

Name	Rank	Taxonomy	Distribution
Aphanizomenon flos-aquae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.71 %
Unclassified	root	N/A	29.79 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	35.46 %

Name	Rank	Taxonomy	Distribution
Aphanizomenon flos-aquae WA102	isolate	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.08 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.71 %
Unclassified	root	N/A	29.79 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	35.46 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352004\|2199823407	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1397	Open in IMG/M
3300000268\|M3P_10170372	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	652	Open in IMG/M
3300000756\|JGI12421J11937_10008068	All Organisms → Viruses → Predicted Viral	4110	Open in IMG/M
3300000756\|JGI12421J11937_10010029	All Organisms → Viruses → Predicted Viral	3658	Open in IMG/M
3300000756\|JGI12421J11937_10046857	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1429	Open in IMG/M
3300000756\|JGI12421J11937_10180464	Not Available	503	Open in IMG/M
3300000882\|FwDRAFT_10090059	All Organisms → Viruses → Predicted Viral	3172	Open in IMG/M
3300002835\|B570J40625_100000934	Not Available	52255	Open in IMG/M
3300002835\|B570J40625_100262739	All Organisms → Viruses → Predicted Viral	1786	Open in IMG/M
3300003395\|JGI25917J50250_1009348	All Organisms → Viruses → Predicted Viral	2468	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.45%
Terrestrial	Environmental → Terrestrial	3.55%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.84%
Freshwater	Environmental → Aquatic → Freshwater	72.34%
Marine	Environmental → Aquatic → Marine	24.11%
Soil	Environmental → Terrestrial → Soil	0.71%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	2.13%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	12.77%
Lake	Environmental → Aquatic → Freshwater → Lake	29.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	34.75%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.84%
River	Environmental → Aquatic → Freshwater → River	3.55%
Sand	Environmental → Terrestrial → Soil → Sand	0.71%
Unclassified	Environmental → Aquatic → Marine → Unclassified	9.22%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.84%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.42%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	4.26%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	12.77%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	3.55%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	29.79%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	26.95%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	9.22%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	3.55%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.84%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.84%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.13%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.42%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.42%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.42%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.42%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	12.77%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	7.80%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.42%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	2.13%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.64%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.67%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.55%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	3.55%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.42%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.71%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.71%
Freshwater And Marine	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine	0.71%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	3.55%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.71%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	25.53%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	11.35%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.42%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.71%
Lotic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic	0.71%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.71%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352004	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental	Open in IMG/M
3300000268	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300000882	Freshwater microbial communities from the Columbia River	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003395	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN	Environmental	Open in IMG/M
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental	Open in IMG/M
3300003429	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN	Environmental	Open in IMG/M
3300003493	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN	Environmental	Open in IMG/M
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2199999997	2199352004	Freshwater	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
M3P_101703723	3300000268	Lotic	MITTQELIDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMVKYMEAIEC*
JGI12421J11937_100080682	3300000756	Freshwater And Sediment	MTQTTQELVDLIYDENISHFDDRDTSDDCDCNIHITIRTITEYWVD*
JGI12421J11937_1001002913	3300000756	Freshwater And Sediment	MITTDELIEYIYDENLEHFDDRDTSDDCDCHIHITLQTMVKYMEAIEC*
JGI12421J11937_100468574	3300000756	Freshwater And Sediment	MITTQELIDYMYDDNLAHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
JGI12421J11937_101804643	3300000756	Freshwater And Sediment	VITTQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
FwDRAFT_1009005910	3300000882	Freshwater And Marine	ELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
B570J40625_10000093437	3300002835	Freshwater	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
B570J40625_1002627398	3300002835	Freshwater	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
JGI25917J50250_10093488	3300003395	Freshwater Lake	MITSQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
JGI25922J50271_1000794111	3300003413	Freshwater Lake	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMLKYMEAIEC*
JGI25914J50564_100246427	3300003429	Freshwater Lake	MITSXELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
JGI25923J51411_10030819	3300003493	Freshwater Lake	MITSQEXLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMLKYMEAIEC*
JGI25923J51411_10225544	3300003493	Freshwater Lake	MITTQQLIDYXYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
JGI25925J51416_100304994	3300003497	Freshwater Lake	MITTQQLIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYME
JGI25930J51415_10141134	3300003499	Freshwater Lake	MITIQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0063233_100671655	3300003986	Freshwater Lake	ELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0066179_102421752	3300004126	Freshwater Lake	LITTQELIDYIYDDNLAHFDDRDTSDDCDCYIHTTLTTIVKYMEAIEC*
Ga0007756_116065533	3300004795	Freshwater Lake	MITCQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMLKYMEAIEC*
Ga0070374_100692932	3300005517	Freshwater Lake	MITSQELLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMLKYMEAIEC*
Ga0070374_102254563	3300005517	Freshwater Lake	MITTQELIDYIYDDNLAHFDDRDTSDDCDCYIHTTLTTMIKYMELIEC*
Ga0070374_105059111	3300005517	Freshwater Lake	QELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
Ga0070374_105534054	3300005517	Freshwater Lake	LIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
Ga0070374_105534393	3300005517	Freshwater Lake	MITSQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLN
Ga0049085_100869363	3300005583	Freshwater Lentic	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0078894_101819747	3300005662	Freshwater Lake	MITSQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMLKYMEAIEC*
Ga0078894_104674355	3300005662	Freshwater Lake	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMVKYMEAIEC*
Ga0078894_107699681	3300005662	Freshwater Lake	IYDDNLAHFDDRDTSDDCDCYIHTTLTTIVKYMEAIEC*
Ga0078894_108930292	3300005662	Freshwater Lake	MITCQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
Ga0078894_109221942	3300005662	Freshwater Lake	MITSQELIDYIYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0078894_109804223	3300005662	Freshwater Lake	MITSQELVDYIYDDNLSHFDDRDTSDDCDCYIHITLNTMLKYMEAIEC*
Ga0078894_111133733	3300005662	Freshwater Lake	MITSQELIDYIYDDNLIHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0078894_112672141	3300005662	Freshwater Lake	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLN
Ga0078894_116251413	3300005662	Freshwater Lake	LLMITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
Ga0073913_100019887	3300005940	Sand	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0070743_1000115122	3300005941	Estuarine	MITTQELINYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0070744_101259614	3300006484	Estuarine	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNT
Ga0070744_101608483	3300006484	Estuarine	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHIT
Ga0070744_101633352	3300006484	Estuarine	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLQTMIKYMEAIEC*
Ga0102853_10088532	3300007543	Estuarine	MITSQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
Ga0102873_10333643	3300007545	Estuarine	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMELIEC*
Ga0102874_10068886	3300007546	Estuarine	LITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
Ga0102880_10684883	3300007550	Estuarine	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
Ga0102880_11377144	3300007550	Estuarine	LIDYIYDDNLIHFDDRDTSDDCDCYIHITLQTMVKYMEAIEC*
Ga0102819_10145621	3300007553	Estuarine	ILLMITTQELINYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0102903_10074642	3300007630	Estuarine	MITSQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
Ga0102901_10043262	3300007634	Estuarine	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
Ga0102865_10401892	3300007639	Estuarine	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEALEC*
Ga0102876_10145451	3300007642	Estuarine	QELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
Ga0105736_10325242	3300007861	Estuary Water	MITTQELIDYIYDENLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0105746_10665933	3300007973	Estuary Water	MITTQELIDYMYDDNLAHFDDRDTSADCDCYIHITLNTMIKYMEAIEC*
Ga0105746_11611693	3300007973	Estuary Water	MITSQELLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMLKYMELIEC*
Ga0114336_10664732	3300008261	Freshwater, Plankton	MINSQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
Ga0102831_11000472	3300008996	Estuarine	MITTQELIDYMYDDNLSHFDDRDTSDDCDCYIHITLQTMIKYMEAIEC*
Ga0102892_10681673	3300009057	Estuarine	MITTQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
Ga0102854_10978173	3300009058	Estuarine	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTM
Ga0114980_1000025436	3300009152	Freshwater Lake	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0114968_100200984	3300009155	Freshwater Lake	MITIQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAMEC*
Ga0114977_1000019651	3300009158	Freshwater Lake	MITTQELIDYMYDDNLTHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0114979_1000122946	3300009180	Freshwater Lake	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEA
Ga0114979_100685921	3300009180	Freshwater Lake	QELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0114969_104038992	3300009181	Freshwater Lake	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAMEC*
Ga0114974_100653501	3300009183	Freshwater Lake	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMVKYMELIEC*
Ga0114982_100417315	3300009419	Deep Subsurface	MITTQELIDYIYDDNLIHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0133913_108294671	3300010885	Freshwater Lake	ITSQELLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMLKYMEAIEC*
Ga0133913_121344143	3300010885	Freshwater Lake	MITSQELLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTML
Ga0133913_132598181	3300010885	Freshwater Lake	MITTQELIDYIYDENLIHFDDRDTSDDCDCHIHITLQTMIKYMEEMEC*
Ga0136709_10468732	3300011184	Freshwater	MITTQELIDYIYDDNLAHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
Ga0157476_1034992	3300012568	Freshwater	MITAQEIIDYIYDDNLAHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0157203_100000927	3300012663	Freshwater	MITTQELIDYIYDDNLAHFDDRDTSDDCDCYIHTTLTTIVKYMEAIEC*
Ga0157203_10111751	3300012663	Freshwater	MITTQELIDYMYDDNLTHFDDRDTSDDCDCYIHIT
Ga0164293_104032623	3300013004	Freshwater	MITSQELIDYIYDDNLEHFDDRNISDDCDCYIHTTVTTMIKYMEAIEC*
Ga0164293_107630541	3300013004	Freshwater	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKY
Ga0164292_108238724	3300013005	Freshwater	DDNLEHFDDRNISDDCDCYIHTTVTTMIKYMEAIEC*
Ga0164294_105969073	3300013006	Freshwater	MITTQELIDYIYDENLIHFDDRDTSDDCDCHIHITLQTMIKYMEAMEC*
Ga0170791_157198481	3300013295	Freshwater	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYME
Ga0181365_11325931	3300017736	Freshwater Lake	ELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC
Ga0181359_10038407	3300019784	Freshwater Lake	MITSQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC
Ga0181359_10625521	3300019784	Freshwater Lake	ITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC
Ga0181359_10831433	3300019784	Freshwater Lake	MITSQELLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMLKYMEAIEC
Ga0181359_11137061	3300019784	Freshwater Lake	MITSQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEA
Ga0211736_101810142	3300020151	Freshwater	MRQELIDYIYDENLIHFDDRDTSDDCDCHIHVTLQTMVKYMEAMEC
Ga0211736_103078023	3300020151	Freshwater	MITSQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0211734_109577673	3300020159	Freshwater	MITSQELLDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMLKYMELIEC
Ga0211734_111022152	3300020159	Freshwater	MITSQELIDYIYDENLIHFDDRDTSDDCDCHIHVTLQTMVKYMEAMEC
Ga0211735_115514977	3300020162	Freshwater	PTMITTQELIYYMYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0211731_117506611	3300020205	Freshwater	MITTQELIDYMYDDNLIHFDDRDTSDDCNCHIHITLNTMIKY
Ga0208050_100295310	3300020498	Freshwater	QELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0208050_10049681	3300020498	Freshwater	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLN
Ga0194048_100155483	3300021519	Anoxic Zone Freshwater	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMVKYMEAIEC
Ga0194059_12733882	3300021600	Anoxic Zone Freshwater	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMVKYMEAIEC
Ga0222714_100129313	3300021961	Estuarine Water	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC
Ga0222713_104739672	3300021962	Estuarine Water	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMELIEC
Ga0244775_10000125132	3300024346	Estuarine	MITTQELINYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0244775_1000837810	3300024346	Estuarine	LITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC
Ga0244775_100948573	3300024346	Estuarine	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0244775_101465582	3300024346	Estuarine	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLQTMIKYMEAIEC
Ga0244775_105718955	3300024346	Estuarine	MITTQELIDYMYDDNLSHFDDRDTSDDCDCYIHITLQTMIKYMEAIEC
Ga0244775_108709652	3300024346	Estuarine	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHLTLQTMIKYMEAIEC
Ga0244776_104287882	3300024348	Estuarine	MITTQELIDYIYDENLIHFDDRDTSDDCDCHIHITLQTMIKYMESIEC
Ga0244776_106569673	3300024348	Estuarine	MITSQELIDYIYDDNLIHFDDRDTSDDCDCYIHITLQTMVKYMEAIEC
Ga0244776_107239283	3300024348	Estuarine	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0255071_10636363	3300027127	Freshwater	GRMITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC
Ga0255066_10149345	3300027131	Freshwater	MITTQELIDYMYDDNLAHFDDRDTSADCDCYIHITLNTMIKYMEAIEC
Ga0255064_10341743	3300027138	Freshwater	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKY
Ga0208929_10743971	3300027227	Estuarine	LITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0208679_10831531	3300027247	Estuarine	ITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC
Ga0255077_10205531	3300027529	Freshwater	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHIT
Ga0255077_10533023	3300027529	Freshwater	MITTQELIDYMYDDNLAHFDDRDTSADCDCYIHITLNTMIKY
Ga0209651_10385533	3300027581	Freshwater Lake	MITSQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKY
Ga0208133_11082451	3300027631	Estuarine	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQ
Ga0208975_11497663	3300027659	Freshwater Lentic	MITSQELIDYMYDDNLAHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC
Ga0209769_11972251	3300027679	Freshwater Lake	LITTQELIDYIYDDNLAHFDDRDTSDDCDCYIHTTLTTMIKYM
Ga0209551_12177982	3300027689	Freshwater Lake	LITTQELIDYIYDDNLAHFDDRDTSDDCDCYIHTTLTTMIKYMELIEC
Ga0209033_100301828	3300027697	Freshwater Lake	MITIQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0209599_1000369714	3300027710	Deep Subsurface	MITTQELIDYIYDDNLIHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC
Ga0209617_101084615	3300027720	Freshwater And Sediment	RGGRMITSQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC
Ga0209297_1000035101	3300027733	Freshwater Lake	MITTQELIDYMYDDNLTHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC
Ga0209296_100731018	3300027759	Freshwater Lake	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMVKYMELIEC
Ga0209088_10000029154	3300027763	Freshwater Lake	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0209770_1000215320	3300027769	Freshwater Lake	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMLKYMEAIEC
Ga0209770_100313579	3300027769	Freshwater Lake	MITCQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0209086_100243033	3300027770	Freshwater Lake	MITIQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAMEC
Ga0209500_101044976	3300027782	Freshwater Lake	MITTQELIDYIYDENLIHFDDRDTSDDCDCHIHITLQTMIKYMEAMEC
Ga0209500_101420701	3300027782	Freshwater Lake	IDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0209107_102660302	3300027797	Freshwater And Sediment	MITTQELIDYMYDDNLAHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC
Ga0209353_100751817	3300027798	Freshwater Lake	LFRGGRMITSQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNAMIKYMEAIEC
Ga0247723_100158213	3300028025	Deep Subsurface Sediment	MTQTTQELVDLIYDENISHFDDRDTSDDCDCHIHITIRTITEYWVD
Ga0247723_10386584	3300028025	Deep Subsurface Sediment	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEGIEC
Ga0315905_103039154	3300032092	Freshwater	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHIT
Ga0334981_0014698_4251_4385	3300033980	Freshwater	QELLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMIKYMELIEC
Ga0334979_0005420_780_926	3300033996	Freshwater	MITSQELLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMIKYMELIEC
Ga0334979_0360847_671_811	3300033996	Freshwater	MITSQELIDYIYDDNLEHFDDRNISDDCDCYIHTTVTTMIKYMEAIE
Ga0334987_0110430_297_443	3300034061	Freshwater	MITTQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0334995_0589536_1_132	3300034062	Freshwater	MTQTTQELVDLIYDENISHFDDRDTSDDCDCHIHITIRTITEYW
Ga0334990_0553653_419_565	3300034068	Freshwater	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMESIEC
Ga0335020_0026828_2222_2368	3300034082	Freshwater	MITTQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0335012_0031258_2_142	3300034093	Freshwater	TTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0335035_0315554_319_465	3300034105	Freshwater	MITSQELIDYIYDDNLIHFDYRDTSDDCDCHIHITLNTMIKYMEAIEC
Ga0335058_0567154_498_638	3300034121	Freshwater	TTQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0335060_0104074_2_121	3300034122	Freshwater	YIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053291

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences