Metagenome / Metatranscriptome Family F052648

Basic Information
Family ID	F052648
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	43 residues
Representative Sequence	GXRPDGSSLTGNFQKTKIPNTIKIKDITHETTGLLILNSVMNI
Number of Associated Samples	119
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.30 %
% of genes from short scaffolds (< 2000 bps)	97.89 %
Associated GOLD sequencing projects	118
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (83.099 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (26.056 % of family members)
Environment Ontology (ENVO)	Unclassified (69.718 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (84.507 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1Ocean5-_00900610 2LPfeb10P161000mDRAFT_10097571 3GOS2216_100357392 4Ga0066849_104174172 5Ga0066837_100598083 6Ga0066834_102449672 7Ga0078893_103608911 8Ga0066371_101127671 9Ga0081761_12425221 10Ga0068472_103973112 11Ga0068472_105788253 12Ga0068472_106298292 13Ga0068475_13956132 14Ga0099675_17703101 15Ga0068495_11180371 16Ga0068495_16449122 17Ga0068482_12466341 18Ga0068481_12044112 19Ga0068493_104294343 20Ga0099697_10110071 21Ga0075506_10262162 22Ga0075511_12314742 23Ga0099963_10705142 24Ga0099957_10767751 25Ga0075476_101948221 26Ga0066372_109287481 27Ga0101667_10759351 28Ga0111541_102210391 29Ga0105350_102010481 30Ga0105352_10782401 31Ga0105352_11284751 32Ga0105355_103906372 33Ga0105351_12162101 34Ga0115658_11651531 35Ga0115660_11840321 36Ga0114997_104975622 37Ga0115553_12054711 38Ga0115567_102527393 39Ga0115011_106129651 40Ga0114933_108154352 41Ga0115000_100523825 42Ga0115012_105091621 43Ga0133547_114785881 44Ga0163110_105208402 45Ga0163110_105382372 46Ga0163110_116879122 47Ga0163109_108471411 48Ga0163111_105062181 49Ga0163111_107476221 50Ga0163111_119705612 51Ga0163111_124629992 52Ga0171652_10200613 53Ga0171651_10660381 54Ga0171646_10733633 55Ga0171646_10821253 56Ga0116832_10730831 57Ga0182082_15718752 58Ga0182063_12621782 59Ga0181428_10501781 60Ga0181410_12072021 61Ga0187220_12151811 62Ga0181565_105635752 63Ga0181565_107734722 64Ga0181607_105238231 65Ga0181569_107309971 66Ga0181567_102988312 67Ga0181593_105205512 68Ga0181591_107476411 69Ga0182068_10370122 70Ga0182086_12097631 71Ga0211495_10462982 72Ga0211671_10983161 73Ga0211693_10199001 74Ga0211604_10259273 75Ga0211706_10954052 76Ga0211709_101902731 77Ga0211656_100916742 78Ga0211498_101975841 79Ga0211498_102057082 80Ga0211675_103105032 81Ga0211497_102442671 82Ga0211497_103320391 83Ga0211636_101787231 84Ga0211659_102249162 85Ga0211496_101434981 86Ga0211587_101496472 87Ga0211523_102010621 88Ga0211622_102129072 89Ga0211639_103204632 90Ga0211695_101433562 91Ga0211638_102846291 92Ga0211548_103788331 93Ga0211548_106005881 94Ga0211551_100340044 95Ga0211551_103817602 96Ga0211514_105737252 97Ga0211535_102054431 98Ga0211546_104370232 99Ga0211640_102058593 100Ga0211543_101676041 101Ga0211543_105573842 102Ga0211541_104580261 103Ga0211715_105626341 104Ga0211585_104594831 105Ga0211503_101318883 106Ga0211503_106953771 107Ga0206679_102139152 108Ga0206691_12801711 109Ga0206680_101111001 110Ga0226832_101688431 111Ga0226832_104760631 112Ga0209992_102674721 113Ga0209992_103256191 114Ga0209715_11822412 115Ga0209374_11484652 116Ga0209630_102413361 117Ga0209630_103763721 118Ga0208261_10931331 119Ga0208523_10517131 120Ga0207990_10863742 121Ga0208765_11451442 122Ga0208765_11518932 123Ga0208764_100944043 124Ga0209432_11396232 125Ga0209359_104711452 126Ga0257106_12627362 127Ga0257113_10988031 128Ga0315328_108501072 129Ga0315322_103572771 130Ga0315319_102872102 131Ga0310344_108309422 132Ga0315316_104995592 133Ga0315324_102974292 134Ga0315327_102546411 135Ga0315329_101179481 136Ga0315329_104329091 137Ga0315329_106333951 138Ga0315333_102182181 139Ga0310345_105433423 140Ga0315334_103540323 141Ga0310342_1036161632 142Ga0372840_209632_463_576
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1Ocean5-_00900610 2LPfeb10P161000mDRAFT_10097571 3GOS2216_100357392 4Ga0066849_104174172 5Ga0066837_100598083 6Ga0078893_103608911 7Ga0066371_101127671 8Ga0081761_12425221 9Ga0068472_103973112 10Ga0068472_105788253 11Ga0068472_106298292 12Ga0099675_17703101 13Ga0068482_12466341 14Ga0075476_101948221 15Ga0066372_109287481 16Ga0101667_10759351 17Ga0111541_102210391 18Ga0105350_102010481 19Ga0105352_10782401 20Ga0114997_104975622 21Ga0115553_12054711 22Ga0114933_108154352 23Ga0115000_100523825 24Ga0163110_105208402 25Ga0163110_116879122 26Ga0163111_107476221 27Ga0163111_124629992 28Ga0171651_10660381 29Ga0181410_12072021 30Ga0211495_10462982 31Ga0211693_10199001 32Ga0211604_10259273 33Ga0211496_101434981 34Ga0211548_103788331 35Ga0211585_104594831 36Ga0209992_102674721 37Ga0208523_10517131 38Ga0208765_11451442 39Ga0315322_103572771
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42. 1Ga0211640_102058593 2Ocean5-_00900610 3LPfeb10P161000mDRAFT_10097571 4GOS2216_100357392 5Ga0078893_103608911 6Ga0066371_101127671 7Ga0081761_12425221 8Ga0099675_17703101 9Ga0066372_109287481 10Ga0101667_10759351 11Ga0111541_102210391 12Ga0105350_102010481 13Ga0105352_10782401 14Ga0114997_104975622 15Ga0115553_12054711 16Ga0115567_102527393 17Ga0114933_108154352 18Ga0115012_105091621 19Ga0163110_105208402 20Ga0163110_105382372 21Ga0163109_108471411 22Ga0163111_105062181 23Ga0163111_107476221 24Ga0163111_119705612 25Ga0171651_10660381 26Ga0116832_10730831 27Ga0181565_107734722 28Ga0211495_10462982 29Ga0211671_10983161 30Ga0211693_10199001 31Ga0211706_10954052 32Ga0211498_102057082 33Ga0211675_103105032 34Ga0211659_102249162 35Ga0211496_101434981 36Ga0211587_101496472 37Ga0211639_103204632 38Ga0211638_102846291 39Ga0211514_105737252 40Ga0211585_104594831 41Ga0206691_12801711 42Ga0209992_102674721 43Ga0209715_11822412 44Ga0209630_103763721 45Ga0208261_10931331 46Ga0208764_100944043 47Ga0209432_11396232 48Ga0257113_10988031 49Ga0315319_102872102 50Ga0310344_108309422 51Ga0315333_102182181
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.99% β-sheet: 0.00% Coil/Unstructured: 69.01%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF16576	HlyD_D23	78.87
PF12700	HlyD_2	3.52
PF00581	Rhodanese	2.11
PF00202	Aminotran_3	0.70

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	16.90 %
Unclassified	root	N/A	83.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	16.90 %
Unclassified	root	N/A	83.10 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	16.20 %
Unclassified	root	N/A	83.10 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.20 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.70 %
Unclassified	root	N/A	83.10 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.38 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.70 %
Unclassified	root	N/A	83.10 %

Name	Rank	Taxonomy	Distribution
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	9.15 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.70 %
Unclassified	root	N/A	83.10 %

Name	Rank	Taxonomy	Distribution
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	9.15 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.70 %
Unclassified	root	N/A	83.10 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	9.15 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.70 %
Unclassified	root	N/A	83.10 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2.82 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.70 %
Unclassified	root	N/A	83.10 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	0.70 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter sp. HIMB1321	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HIMB1321	0.70 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2.82 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.70 %
Unclassified	root	N/A	83.10 %

Scaffold	Taxonomy	Length	IMG/M Link
2166559017\|JCVI_READ_961506	Not Available	988	Open in IMG/M
3300000219\|LPfeb10P161000mDRAFT_c1009757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2034	Open in IMG/M
3300001972\|GOS2216_10035739	All Organisms → cellular organisms → Bacteria → Proteobacteria	1933	Open in IMG/M
3300005430\|Ga0066849_10417417	Not Available	504	Open in IMG/M
3300005593\|Ga0066837_10059808	All Organisms → cellular organisms → Bacteria → Proteobacteria	1434	Open in IMG/M
3300005596\|Ga0066834_10244967	Not Available	565	Open in IMG/M
3300005837\|Ga0078893_10360891	Not Available	510	Open in IMG/M
3300006024\|Ga0066371_10112767	Not Available	821	Open in IMG/M
3300006082\|Ga0081761_1242522	Not Available	610	Open in IMG/M
3300006313\|Ga0068472_10397311	Not Available	760	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	7.04%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	2.11%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	16.90%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.41%
Oceanic	Environmental → Aquatic → Marine → Oceanic	35.92%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.11%
Strait	Environmental → Aquatic → Marine → Strait	2.11%
Unclassified	Environmental → Aquatic → Marine → Unclassified	29.58%
Volcanic	Environmental → Aquatic → Marine → Volcanic	2.82%

Habitat	Taxonomy	Distribution
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	3.52%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	2.11%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	11.97%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	7.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	29.58%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	20.42%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	9.15%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.04%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	2.82%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.11%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.11%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.41%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.11%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	2.11%
Diffuse Hydrothermal Flow Volcanic Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent	0.70%
Environmental And Host-Associated	Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated	0.70%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	1.41%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	26.06%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	14.79%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	6.34%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	4.23%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	3.52%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.41%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.70%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	3.52%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.11%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.41%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	7.75%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	9.15%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.82%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.11%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.70%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	5.63%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.70%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559017	Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean5 (GOS 4441573)	Environmental	Open in IMG/M
3300000219	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 1000m	Environmental	Open in IMG/M
3300001972	Marine microbial communities from the Sargasso Sea - GS000d	Environmental	Open in IMG/M
3300005430	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69	Environmental	Open in IMG/M
3300005593	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86	Environmental	Open in IMG/M
3300005596	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006024	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B	Environmental	Open in IMG/M
3300006082	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA	Environmental	Open in IMG/M
3300006313	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m	Environmental	Open in IMG/M

Showing 1 to 10 of 119 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ocean5-_00900610	2166559017	Environmental And Host-Associated	RVGRDFELQGGCHPDGNSLTGSFQNTHFKNTISIRDITQETTGLLMLTSVIYI
LPfeb10P161000mDRAFT_10097571	3300000219	Marine	GSSLTGNFKKTKIPNTIKIRDNTQETTGLLILTSVKYIICLWV*
GOS2216_100357392	3300001972	Marine	QEGCIPEGNSLTGNFPESKIPNTIRIKDITHETTGLLI*
Ga0066849_104174172	3300005430	Marine	SPDGSSLTGNFQKTNKPKTIKIKEKTVDTTGLLILRSVINITT*
Ga0066837_100598083	3300005593	Marine	GSSLTGSFQKTKSPNTIKIRDITHETTGLLMLNSVMNI*
Ga0066834_102449672	3300005596	Marine	DGSSLTGNFQKTKTPNTIKIRDKTHETTGLLILTSVKYIIFL*
Ga0078893_103608911	3300005837	Marine Surface Water	SLTGNFQKTKRPNIMSIKDITHETAGLLMLSSVINI*
Ga0066371_101127671	3300006024	Marine	SLTGNFQNTNIPNTIRIKDITHETTGRLILSSVMYI*
Ga0081761_12425221	3300006082	Diffuse Hydrothermal Flow Volcanic Vent	TIGGCNPEGSSLTGSFQKTNIPKTIKIKEKTDETTGLFILKSVIYIN*
Ga0068472_103973112	3300006313	Marine	SPDGNSRTGNFQKTNIPNTTNINEKTEDTTGLLMLRSVINIMIY*
Ga0068472_105788253	3300006313	Marine	GNFQKTNVPNTISIKDNTHEKAGLLILTSVKYIIF*
Ga0068472_106298292	3300006313	Marine	STIITGGRPDGNSLTGNFQKINKPNTINIKEKTVDTTGLLILRSVINIIY
Ga0068475_13956132	3300006318	Marine	GGRPDGSSLTGNFQKTKSPNTIKIKDITHETTGLLMLNSVMNI
Ga0099675_17703101	3300006334	Marine	GSSLTGNFEKTKVPNTTSINDNTHESAGLLILTSVKYI*
Ga0068495_11180371	3300006337	Marine	GSSLTGNFEKTKEPNTTNIKDNTHDNAGLLILTSVKYI*
Ga0068495_16449122	3300006337	Marine	TGGCRPDGSSLTGNFEKTKVPNTTSINDNTHESAGLLILTSVKYI*
Ga0068482_12466341	3300006338	Marine	LTGNFQKTKTPNTTKIIDKTHETTGLLILISVKYIICL*
Ga0068481_12044112	3300006339	Marine	DGSSLTGNFQKTKSPNTIKIRDITHETTGLLMLNSVMNI*
Ga0068493_104294343	3300006341	Marine	TGGRPDGSSLTGNFQKINKPNTTNIKEKTTDTTGLLILRSVINIIY
Ga0099697_10110071	3300006347	Marine	SRTGNFQKTNIPNTTNINEKTEDTTGLLMLRSVINIMIY*
Ga0075506_10262162	3300006401	Aqueous	NSLTGNFQNTKRPKMINIKDITHETAGLLMLNSVMNI*
Ga0075511_12314742	3300006402	Aqueous	NSLTGNFQNTKRPKMININDITHETAGLLMLNSVMNI*
Ga0099963_10705142	3300006413	Marine	PDGSSLTGNFEKTKVPNTTSIKDNTHDNAGLLILTSVKYI*
Ga0099957_10767751	3300006414	Marine	GCNPDGSSLTGNFQKTKSPNTIKIKDITHETTGLLMLISVMNI*
Ga0075476_101948221	3300006867	Aqueous	PSGNSLTGNFQNTKRPKMININDITHETAGLLILNSVMNI*
Ga0066372_109287481	3300006902	Marine	TGNFQKTKIPNIMRIRENTQETTGLLMLKSVINIISLLV*
Ga0101667_10759351	3300007116	Volcanic Co2 Seep Seawater	TTTTGGIPFGNSLTGNFQKTNNPKIINIKDITHETAGRLILNSVMNI
Ga0111541_102210391	3300008097	Marine	TGGCIPAGNSLTGSFQKTKIPNVIRINDITHETTGLLILMSVMNI*
Ga0105350_102010481	3300008224	Methane Seep Mesocosm	CTIGGCNPDGSSLTGNFEKTKIPNIIKIRDKTHDTTGLLILTSVKYIIFL*
Ga0105352_10782401	3300008225	Methane Seep Mesocosm	TGGCKPDGSSLTGSFQKTKIPNTIKIRDNTQETTGLLMLKSVIYIISLLV*
Ga0105352_11284751	3300008225	Methane Seep Mesocosm	ITGGRPDGSSLTGNFQKINKPNTINIKEKTVDTTGLLILRSVINIIY
Ga0105355_103906372	3300008226	Methane Seep Mesocosm	LIWTTGGCIPDGSSLTGSFQKTKIPNTIKISDNTQETTGLLMLKSVIYIIS*
Ga0105351_12162101	3300008254	Methane Seep Mesocosm	TCTTGGCNPDGSSLTGNFQKTKSPNTIKIRDITHETTGLLMLNSVMNI*
Ga0115658_11651531	3300008629	Marine	LTGNFQKTKIPNTIKIRDNTQETTGLLILNSVIYIIFL*
Ga0115660_11840321	3300008738	Marine	KPDGSSLTGNFQKTNVPNTTSIKDRTHEKAGLLILTSVKYI*
Ga0114997_104975622	3300009425	Marine	LTCTTGGCKPSGNSLTGSLEKTNIPNTINIRDITHATTGLLILTSVINIIF*
Ga0115553_12054711	3300009445	Pelagic Marine	TTGGWIPSGNSLTGSSQKTKPPNIIRIRDITHATTGLRILTSVINIFI*
Ga0115567_102527393	3300009508	Pelagic Marine	LICTTGGCNPSGNSLTGNFEKTKIPKTTRIRDITHAMTGLLILISVIYII*
Ga0115011_106129651	3300009593	Marine	SSLTGNFQKTKSPNTIKIKDITHETTGLLMLNSVMNI*
Ga0114933_108154352	3300009703	Deep Subsurface	ICTTGGCIPLGNSLTGNFQKTNKPKTIKISDITHETVGLFMLNSEINIY*
Ga0115000_100523825	3300009705	Marine	SLEKTNKPNTTSIIEKTAATTGLLILSSVMYIIV*
Ga0115012_105091621	3300009790	Marine	GSSLTGSFQKTKRPNIINIKDITHETAGLLILNSVMNI*
Ga0133547_114785881	3300010883	Marine	KPDGSSLTGSFQKTKIPNTIKIRDNTQETTGLLMLKSVIYIISLLV*
Ga0163110_105208402	3300012928	Surface Seawater	LGNSRTGNFQKTNKPKTIKISDITHDIAGLLMLSSVINIYLLMGFILP*
Ga0163110_105382372	3300012928	Surface Seawater	LGNSLTGNFQKTKRPNNIKINDITHETAGRFILNSVMNI*
Ga0163110_116879122	3300012928	Surface Seawater	IPFGNSLTGNFQKTNKPKIIRIRDITHDTVGLFILNSVMNIYLNIGFIFP*
Ga0163109_108471411	3300012936	Surface Seawater	TGGCIPFGNSLTGNFQKTNKPKIIRIRDITHDTVGLFMLNSVMNIYLVIGFIFP*
Ga0163111_105062181	3300012954	Surface Seawater	DGSSLTGNFQKTKSPNTIKIRDITHETTGLLMLNSVINI*
Ga0163111_107476221	3300012954	Surface Seawater	GNSLTGSFQKTNNPKIIKINDITHEMVGLLILNSVINI*
Ga0163111_119705612	3300012954	Surface Seawater	SLTGNFQKTNIPKIIKIKDITHDTAGLLILSSVINI*
Ga0163111_124629992	3300012954	Surface Seawater	SLTGNFQKTNKPKTIKIRDITQDTVGLLMLNSVINIYL*
Ga0171652_10200613	3300013110	Marine	DGSSLTGNFQKTNVPNTTSIKDRTHEKAGLLILTSVKYI*
Ga0171651_10660381	3300013115	Marine	PDGSSLTGNFQKTNAPNTINIRDNTQENAGLLMLTSVKYIIF*
Ga0171646_10733633	3300013116	Marine	TGSFQKTKSPNTIKIRDITHETTGLLMLNSVMNI*
Ga0171646_10821253	3300013116	Marine	LTGNFQKTKIPNVIRIKDITHETTGLLILMSVMNI*
Ga0116832_10730831	3300013231	Marine	TCTTGGWIPSGNSLTGNFQNTKRPKMININDITHETAGLLILNSVMNI*
Ga0182082_15718752	3300016771	Salt Marsh	GWIPSGNSLTGNFQNTKRPKMININDITHDTAGLLMLNSVMNI
Ga0182063_12621782	3300016781	Salt Marsh	CTTGGWIPSGNSLTGNFQNTKRPKMININDITHDTAGLLMLNSVMNI
Ga0181428_10501781	3300017738	Seawater	RPVGSSLTGNFEKTKVPKTTSIKDNTQDNAGLLILTSVKYI
Ga0181410_12072021	3300017763	Seawater	FTCTXTTGGXIPSGNSLTGNFQKTNRPNIINIKDITHETAGLLILSSVINI
Ga0187220_12151811	3300017768	Seawater	PDGSSLTGNFEKTKVPNTTSIKDNTQDNAGLLILTSVKYI
Ga0181565_105635752	3300017818	Salt Marsh	WIPSGNSLTGNFQNTKRPKMININDITHETAGLLMLNSVMNI
Ga0181565_107734722	3300017818	Salt Marsh	TTGGXMPSGNSLTGNFQKTKRPNIISIKDITHETPGLLILNSVMNI
Ga0181607_105238231	3300017950	Salt Marsh	IPSGNSLTGNFQKTNRPKIIKIKDITHETAGLLILSSEINI
Ga0181569_107309971	3300017986	Salt Marsh	NSLTGNFQNTKRPKMININDITHETAGLLILNSVMNI
Ga0181567_102988312	3300018418	Salt Marsh	TXTTGGWIPSGNSLTGNFQNTKRPKMININDITHETAGLLMLNSVMNI
Ga0181593_105205512	3300018423	Salt Marsh	SLTGNFQNTKRPKMININDITHETAGLLILNSVMNI
Ga0181591_107476411	3300018424	Salt Marsh	GGWIPSGNSLTGNFQNTKRPKMININDITHETAGLLILNSVMNI
Ga0182068_10370122	3300019280	Salt Marsh	SGNSLTGNFQNTKRPKMININDITHETAGLLMLNSVMNI
Ga0182086_12097631	3300020013	Salt Marsh	GNSLTGNFQNTKRPKMININDITHETAGLLILNSVMNI
Ga0211495_10462982	3300020268	Marine	TTGGCRPDGSSLTGNFEKTKVPNTTSIKDNTQDNAGLLILTSVKYI
Ga0211671_10983161	3300020270	Marine	GGCIPEGSSLTGNFQKTKSPNTIKIKDITHETTGLLILKSVINI
Ga0211693_10199001	3300020308	Marine	LTGNFQNTKAPNTTSINDKTQEKAGLLMLRSVKYI
Ga0211604_10259273	3300020342	Marine	GGXIPLGNSLTGNFQKTNRPNMINIKDITQDTVGLLILNSVINIIYL
Ga0211706_10954052	3300020345	Marine	GGXRPEGSSLTGNFEKTKVPKTTNIKDSTHDNAGLLILTSVKYI
Ga0211709_101902731	3300020369	Marine	GXRPDGNSLTGNFQKINKPNTINIKEKTADTTGLLILRSVINIIY
Ga0211656_100916742	3300020375	Marine	GXRPDGNSLTGNFQKINKPNTINIKEKTDDTTGLLILRSVINIIY
Ga0211498_101975841	3300020380	Marine	CTTGGXIPDGSSLTGNFQKTKIPNTIKIKDITHETTGLLMLNSVMNI
Ga0211498_102057082	3300020380	Marine	SLTGNFQKTNNPKITKINDITHDTVGLLILNSVINI
Ga0211675_103105032	3300020391	Marine	PLGNSLTGNFQKTNKPNTISIRDITQDTVGLLILNSVINIIYL
Ga0211497_102442671	3300020394	Marine	CTCITGGCRPDGSSLTGNFQKTKIPNTIKIKDITHETTGLLILNSVMNI
Ga0211497_103320391	3300020394	Marine	DGSSLTGNFEKTKVPKTTNIKDNTHDNAGLLILTSVKYI
Ga0211636_101787231	3300020400	Marine	PFGNSLTGNFQKTNKPKIINIKDITQETAGRLILNSVMNI
Ga0211659_102249162	3300020404	Marine	XTXTTGGXIPLGNSLTGNFQKTNRPNMINIKDITQDTVGLLILNSVINIIYL
Ga0211496_101434981	3300020405	Marine	LGNSLTGNFQKTKRPKMTSINDITQDIAGLLILNSVIYIYL
Ga0211587_101496472	3300020411	Marine	AGNSLTGNFQKTNRPNTMRIKDITHETTGLLILISVMNI
Ga0211523_102010621	3300020414	Marine	GNSLTGNFQKTNNPKIINIKDITHETAGRLILNSVINI
Ga0211622_102129072	3300020430	Marine	XTTGGCIPAGNSLTGNFQKTKIPNVIRINDITHETTGLLILMSVMNI
Ga0211639_103204632	3300020435	Marine	GNFQKTNIPNTIRIRENTQETTGLLILKSVIYIIYLWV
Ga0211695_101433562	3300020441	Marine	XTXTTGGCKPDGSSLTGNFEKTKVPKTTNIKDNTHDNAGLLILTSVKYI
Ga0211638_102846291	3300020448	Marine	XTIGGCNPEGSSLTGNFQKTNIPNKIKISDITHEMTGLLILTSVKYII
Ga0211548_103788331	3300020454	Marine	TGNFQKTKSPNKIKINDITHETTGLLILNSVMNIXSLIFY
Ga0211548_106005881	3300020454	Marine	PDGSSLTGNFQKTKSPNTIKIKDITHEKTGLLMLNSVMNI
Ga0211551_100340044	3300020456	Marine	SLTGNFQKTKSPNTIKIRDITHETTGLLMLNSVTNI
Ga0211551_103817602	3300020456	Marine	TGGCKPDGSSLTGNFEKTKVPKTTNIKDNTQDSAGLLILTSVKYI
Ga0211514_105737252	3300020459	Marine	TGGXSPFGSSLTGSFQKTNKPKTIKIKEKTVDTTGLFILRSVINIIN
Ga0211535_102054431	3300020461	Marine	TCTCTTGGXRPDGSSLTGNFQKTKIPNTIKIKDITHETTGLLILNSVMNI
Ga0211546_104370232	3300020462	Marine	GCNPDGSSLTGNFQKTKSPNTIKIKDITHEKTGLLMLNSVMNI
Ga0211640_102058593	3300020465	Marine	GXRPDGSSLTGNFQKTKIPNTIKIKDITHETTGLLILNSVMNI
Ga0211543_101676041	3300020470	Marine	GGCRPDGSSLTGNFQKTKIPNTIKIKDITHETTGLLILNSVMNI
Ga0211543_105573842	3300020470	Marine	DGSSLTGNFQKTKIPNTIKIKDITHETTGLLMLNSVMNI
Ga0211541_104580261	3300020475	Marine	GSSLTGSFQKTKRPNIINIKDITHETAGLLILNSVMNI
Ga0211715_105626341	3300020476	Marine	TGNFQKTKTPNTIKIRDKTHETAGLLMLTSVKYIIFL
Ga0211585_104594831	3300020477	Marine	PEGSSLTGNFQKTKIPNTIKINEKTHATAGLLILTSVIYIFIFL
Ga0211503_101318883	3300020478	Marine	TGGCIPAGNSLIGNFQKTKRPNVIRIKDITHETTGLLILMSVMNI
Ga0211503_106953771	3300020478	Marine	SLTGNFQKTKIPNTIKIKDITHEKTGLLMLNSVMNI
Ga0206679_102139152	3300021089	Seawater	NFQKTNIPNTTNINEKTEDTTGLLMLRSVINIMIY
Ga0206691_12801711	3300021342	Seawater	TCTTGGCSPEGSSLTGKFQKTKSPNTIKIKDITHETTGLLMLNSVMNI
Ga0206680_101111001	3300021352	Seawater	SSLTGSFQKTKSPNTIKIRDITHETTGLLMLNSVMNI
Ga0226832_101688431	3300021791	Hydrothermal Vent Fluids	IXITGGXRPDGSSLTGNFQKINKPNTTNIKEKTDDTTGLLILRSVINIIY
Ga0226832_104760631	3300021791	Hydrothermal Vent Fluids	SLTGNFQKTKSPNTIKIKDITHETTGLLMLISVMNI
Ga0209992_102674721	3300024344	Deep Subsurface	CKPDGSSLTGNFQNTNIPNTTSIKDSTHAKAGLLILTSVKYI
Ga0209992_103256191	3300024344	Deep Subsurface	LTGNFQKTKIPNTIKIKDITHETTGLLILNSVMNI
Ga0209715_11822412	3300025699	Pelagic Marine	GGXIPSGNSLTGNFQKTNKPNIINIKDITHETAGLLILSSVINI
Ga0209374_11484652	3300025705	Marine	TGGXIPSGNSLTGNFQKTNRPNIINIKDITHETAGLLILSSVINI
Ga0209630_102413361	3300025892	Pelagic Marine	XTTGGXIPSGNSLTGSFQKTNRPNIINIKDITHETAGLLILSSVINI
Ga0209630_103763721	3300025892	Pelagic Marine	TXTTGGXIPSGSSLTGNFQNTKSPKIIKIKDITHETAGRLMLNSVINI
Ga0208261_10931331	3300026076	Marine	SSLTGNFQNTNIPKMISINDITHETTGLLILTSVKYI
Ga0208523_10517131	3300026191	Marine	LTGNFQKTNKPNTINIKENTADTTGLLILRSVINIIN
Ga0207990_10863742	3300026262	Marine	TXIXITGGXRPDGNSLTGNFQKINKPNTINIKEKTVDTTGLLILRSVINIIY
Ga0208765_11451442	3300026265	Marine	PEGNSLTGNFQKTNKPNTISIRDITHDTTGLLMLTSVIYI
Ga0208765_11518932	3300026265	Marine	TGNFQKTNIPNTTNINEKTEDTTGLLMLRSVINIMIY
Ga0208764_100944043	3300026321	Marine	KPEGSSLTGNFQKTNVPKTTSIKDRTHEKAGLLILTSVKYI
Ga0209432_11396232	3300027630	Marine	TTGGXSPEGNSRTGNFQKTNIPNTTNINEKTEDTTGLLMLRSVINIMIY
Ga0209359_104711452	3300027830	Marine	TTGGXIPSGNSLTGNFQKTNRPNIIKIKDITHETAGLLILSSVINI
Ga0257106_12627362	3300028194	Marine	TGGXIPSGNSLTGNFQKTNIPNTINIKDITHETAGLLILSSVINI
Ga0257113_10988031	3300028488	Marine	TXIXTTGGWRPDGSSLTGNFQKINKPNTINIKEKTADTTGLLILRSVINIIY
Ga0315328_108501072	3300031757	Seawater	SLTGNFQKTNVPNTTSIKDSTHEKAGLLILTSVKYIIF
Ga0315322_103572771	3300031766	Seawater	STSTCTTGGCNPDGSSLTGNFQKTKSPNTIKIRDITHETTGLLMLNSVMNI
Ga0315319_102872102	3300031861	Seawater	TCTTGGCKPDGSSLTGNFQKTKTPNTIKIIDKTHETTGLLILTSVKYIICL
Ga0310344_108309422	3300032006	Seawater	EGSSLTGSFQKTKIPNIIKISDKTHDTTGLLILTSVKYIIFL
Ga0315316_104995592	3300032011	Seawater	SSLTGNFQKTKSPNTIKIKDITHETTGLLMLNSVMNI
Ga0315324_102974292	3300032019	Seawater	GGXSPEGNSRTGNFQKTNIPNTTNINEKTEDTTGLLMLRSVINIMIY
Ga0315327_102546411	3300032032	Seawater	GSSLTGNFQKTNKPNTISIRDITHDTTGLLMLTSVIYI
Ga0315329_101179481	3300032048	Seawater	FQKTKIPNTIKIRDNTQETTGLLMLKSVIYIISLLV
Ga0315329_104329091	3300032048	Seawater	STXICTTGGXSPDGSSLTGNFQKTNKPNTINIKEKTADTTGLLILRSVINIIN
Ga0315329_106333951	3300032048	Seawater	GGCKPDGSSLTGNFQKTKIPNTIKIRDNTHATTGLLILTSVKYIIYL
Ga0315333_102182181	3300032130	Seawater	CIPEGSSLTGNFQKTNKPNTISIRDITHDTTGLLMLTSVIYI
Ga0310345_105433423	3300032278	Seawater	TGNFQKTNVPNTTSIKDSTHEKAGLLILTSVKYIIF
Ga0315334_103540323	3300032360	Seawater	GXSPDGSSLTGNFQKTNKPKTTKIKEKTVDTTGLLILRSVINIIT
Ga0310342_1036161632	3300032820	Seawater	TWTXTTGGCKPDGSSLTGNFEKTKVPNTTSIKDNTHDNAGLLILTSVKYI
Ga0372840_209632_463_576	3300034695	Seawater	LTGNFQKTNKPNIINIKENTADTTGLLILRSVINIIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052648

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences