Metagenome / Metatranscriptome Family F052222

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F052222
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	50 residues
Representative Sequence	MMFAAVVGHRSGRATPSLRDAPQRQSMEIVRRETIYRNRNAVQTNPATS
Number of Associated Samples	124
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.29 %
% of genes near scaffold ends (potentially truncated)	69.93 %
% of genes from short scaffolds (< 2000 bps)	78.32 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (68.531 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.776 % of family members)
Environment Ontology (ENVO)	Unclassified (19.580 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.958 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.47% β-sheet: 0.00% Coil/Unstructured: 67.53%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF13683	rve_3	69.01
PF01527	HTH_Tnp_1	18.31
PF13276	HTH_21	2.82
PF13408	Zn_ribbon_recom	1.41
PF07721	TPR_4	1.41
PF01695	IstB_IS21	0.70
PF00665	rve	0.70
PF02371	Transposase_20	0.70
PF08388	GIIM	0.70
PF13817	DDE_Tnp_IS66_C	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.70
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.70
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.70
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.70
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.70
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.53 %
Unclassified	root	N/A	31.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.53 %
Unclassified	root	N/A	31.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.53 %
Unclassified	root	N/A	31.47 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.96 %
Unclassified	root	N/A	31.47 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.76 %
Unclassified	root	N/A	31.47 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.70 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	28.67 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.70 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.70 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.47 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.59 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3.50 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.10 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.70 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.70 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.70 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.47 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.59 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	2.80 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	2.10 %
Candidatus Accumulibacter cognatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter cognatus	0.70 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.70 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.70 %
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	0.70 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.47 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.50 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	2.80 %
unclassified Methylovirgula	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula	1.40 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	0.70 %
Xanthomonas citri group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group	0.70 %
unclassified Methylosinus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus	0.70 %
Candidatus Accumulibacter cognatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter cognatus	0.70 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.70 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.47 %
Bradyrhizobium sp. 187	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	3.50 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	2.80 %
Methylovirgula sp. HY1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. HY1	1.40 %
Methylosinus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp.	0.70 %
Xanthomonas citri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri	0.70 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	0.70 %
Candidatus Accumulibacter cognatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter cognatus	0.70 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.70 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.70 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001098\|JGI12633J13313_101465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1367	Open in IMG/M
3300001151\|JGI12713J13577_1004050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1406	Open in IMG/M
3300001166\|JGI12694J13545_1006813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1367	Open in IMG/M
3300001173\|JGI12669J13542_100354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1378	Open in IMG/M
3300001593\|JGI12635J15846_10190742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1364	Open in IMG/M
3300002245\|JGIcombinedJ26739_100365343	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300004006\|Ga0055453_10022504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1561	Open in IMG/M
3300005434\|Ga0070709_10098817	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300005434\|Ga0070709_10697325	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300005435\|Ga0070714_100583384	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300005437\|Ga0070710_11435927	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005439\|Ga0070711_101002216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	716	Open in IMG/M
3300005617\|Ga0068859_102507395	Not Available	568	Open in IMG/M
3300005842\|Ga0068858_102543601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. HY1	506	Open in IMG/M
3300006047\|Ga0075024_100833087	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300006086\|Ga0075019_10112408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1572	Open in IMG/M
3300006163\|Ga0070715_10451713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	726	Open in IMG/M
3300006174\|Ga0075014_100014312	All Organisms → cellular organisms → Bacteria → Proteobacteria	2886	Open in IMG/M
3300006237\|Ga0097621_100067705	All Organisms → cellular organisms → Bacteria	2943	Open in IMG/M
3300006237\|Ga0097621_102197259	Not Available	528	Open in IMG/M
3300006854\|Ga0075425_101078957	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300009545\|Ga0105237_11156546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	780	Open in IMG/M
3300009553\|Ga0105249_11038057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp.	889	Open in IMG/M
3300009826\|Ga0123355_11055464	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300010371\|Ga0134125_10335046	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300012212\|Ga0150985_109170502	Not Available	631	Open in IMG/M
3300012481\|Ga0157320_1025656	Not Available	566	Open in IMG/M
3300012957\|Ga0164303_10778104	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300012961\|Ga0164302_10653552	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300012986\|Ga0164304_10816442	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300013105\|Ga0157369_10348578	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300013105\|Ga0157369_10348578	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300014501\|Ga0182024_10637691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1327	Open in IMG/M
3300014654\|Ga0181525_10761318	Not Available	545	Open in IMG/M
3300015206\|Ga0167644_1054716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1401	Open in IMG/M
3300015373\|Ga0132257_100376330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1721	Open in IMG/M
3300016319\|Ga0182033_10245986	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300016357\|Ga0182032_10315715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300016445\|Ga0182038_10691619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	887	Open in IMG/M
3300016750\|Ga0181505_10519869	Not Available	511	Open in IMG/M
3300017823\|Ga0187818_10266990	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300017943\|Ga0187819_10353553	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300019888\|Ga0193751_1074251	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300020582\|Ga0210395_10229875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1392	Open in IMG/M
3300021170\|Ga0210400_11427195	Not Available	551	Open in IMG/M
3300021171\|Ga0210405_10223488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1491	Open in IMG/M
3300021178\|Ga0210408_10253743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1401	Open in IMG/M
3300021180\|Ga0210396_10161680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2008	Open in IMG/M
3300021180\|Ga0210396_10220856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1689	Open in IMG/M
3300021181\|Ga0210388_10310541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1385	Open in IMG/M
3300021384\|Ga0213876_10081159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1715	Open in IMG/M
3300021401\|Ga0210393_10265935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1392	Open in IMG/M
3300021402\|Ga0210385_10211715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1412	Open in IMG/M
3300021403\|Ga0210397_10357867	Not Available	1083	Open in IMG/M
3300021404\|Ga0210389_10199991	Not Available	1558	Open in IMG/M
3300021405\|Ga0210387_10281784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1459	Open in IMG/M
3300021406\|Ga0210386_10270427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1452	Open in IMG/M
3300021407\|Ga0210383_10343217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1286	Open in IMG/M
3300021420\|Ga0210394_10997907	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300021420\|Ga0210394_11070112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	696	Open in IMG/M
3300021433\|Ga0210391_10252389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1384	Open in IMG/M
3300021474\|Ga0210390_11316732	Not Available	578	Open in IMG/M
3300021475\|Ga0210392_10195077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1410	Open in IMG/M
3300021477\|Ga0210398_10254101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1432	Open in IMG/M
3300021560\|Ga0126371_10853832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter cognatus	1055	Open in IMG/M
3300024181\|Ga0247693_1006066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1466	Open in IMG/M
3300024227\|Ga0228598_1111995	Not Available	552	Open in IMG/M
3300025898\|Ga0207692_10685614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	664	Open in IMG/M
3300025898\|Ga0207692_10892546	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300025901\|Ga0207688_10869875	Not Available	571	Open in IMG/M
3300025906\|Ga0207699_10165083	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300025910\|Ga0207684_10071912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2938	Open in IMG/M
3300025916\|Ga0207663_10219600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1382	Open in IMG/M
3300025916\|Ga0207663_10286221	All Organisms → cellular organisms → Bacteria → Proteobacteria	1226	Open in IMG/M
3300025928\|Ga0207700_10070129	All Organisms → cellular organisms → Bacteria → Proteobacteria	2693	Open in IMG/M
3300025928\|Ga0207700_10701816	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300025929\|Ga0207664_10302513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1407	Open in IMG/M
3300025929\|Ga0207664_11947784	Not Available	510	Open in IMG/M
3300025939\|Ga0207665_10118055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1871	Open in IMG/M
3300026035\|Ga0207703_12119350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. HY1	538	Open in IMG/M
3300026078\|Ga0207702_10637358	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300027000\|Ga0207803_1018675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri	901	Open in IMG/M
3300027117\|Ga0209732_1011610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1476	Open in IMG/M
3300027545\|Ga0209008_1025495	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300027854\|Ga0209517_10531682	Not Available	635	Open in IMG/M
3300027879\|Ga0209169_10462870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	666	Open in IMG/M
3300027884\|Ga0209275_10120316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1365	Open in IMG/M
3300027889\|Ga0209380_10503222	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300027898\|Ga0209067_10090428	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300027911\|Ga0209698_10140881	All Organisms → cellular organisms → Bacteria	1984	Open in IMG/M
3300028563\|Ga0265319_1046259	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300028577\|Ga0265318_10041559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1747	Open in IMG/M
3300028773\|Ga0302234_10284564	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300028879\|Ga0302229_10383028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	626	Open in IMG/M
3300029944\|Ga0311352_10604604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	875	Open in IMG/M
3300030520\|Ga0311372_11229954	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300031234\|Ga0302325_10981411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1157	Open in IMG/M
3300031236\|Ga0302324_100629506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1531	Open in IMG/M
3300031238\|Ga0265332_10348752	Not Available	611	Open in IMG/M
3300031525\|Ga0302326_10713235	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300031544\|Ga0318534_10468778	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300031561\|Ga0318528_10752341	Not Available	521	Open in IMG/M
3300031682\|Ga0318560_10369909	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300031736\|Ga0318501_10177725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1106	Open in IMG/M
3300031879\|Ga0306919_10843999	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300032008\|Ga0318562_10122099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1489	Open in IMG/M
3300032060\|Ga0318505_10588106	Not Available	523	Open in IMG/M
3300032074\|Ga0308173_10500924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1087	Open in IMG/M
3300032089\|Ga0318525_10103885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1449	Open in IMG/M
3300032805\|Ga0335078_11947225	Not Available	632	Open in IMG/M
3300032828\|Ga0335080_10367871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	1548	Open in IMG/M
3300032892\|Ga0335081_10899587	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300032898\|Ga0335072_10416987	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300032898\|Ga0335072_10451120	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300033289\|Ga0310914_10399244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1244	Open in IMG/M
3300033545\|Ga0316214_1072579	Not Available	508	Open in IMG/M
3300033547\|Ga0316212_1010473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1329	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.12%
Host-Associated	Host-Associated	18.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.13%
Plants	Host-Associated → Plants	18.18%
Aquatic	Environmental → Aquatic	6.99%
Arthropoda	Host-Associated → Arthropoda	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.29%
Peat	Environmental → Terrestrial → Peat	5.59%
Sediment	Environmental → Aquatic → Sediment	3.50%
Roots	Host-Associated → Plants → Roots	3.50%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Marine	Environmental → Aquatic → Marine	0.70%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.36%
Loam	Environmental → Terrestrial → Soil → Loam	26.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.80%
Unclassified	Host-Associated → Plants → Roots → Unclassified	2.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.40%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.40%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.70%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.70%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	2.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.40%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.40%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.40%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.70%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.70%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.99%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.20%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.10%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.40%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.40%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.40%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	1.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.40%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.70%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.70%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.70%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.70%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.70%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001098	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1	Environmental	Open in IMG/M
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300001173	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027000	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes)	Environmental	Open in IMG/M
3300027045	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027313	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028020	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE4	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M
3300033547	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1	Host-Associated	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12633J13313_1014651	3300001098	Forest Soil	MFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATS
JGI12713J13577_10040501	3300001151	Forest Soil	MFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSL
JGI12694J13545_10068133	3300001166	Forest Soil	MFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSV
JGI12669J13542_1003543	3300001173	Forest Soil	MFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSLL
JGI12635J15846_101907421	3300001593	Forest Soil	MFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPAT
JGIcombinedJ26739_1003653433	3300002245	Forest Soil	MFAAAVGHRSGRATPSLRDAPQQQSMEIVGRETIYRNRNAVQTNPATSV
Ga0055453_100225043	3300004006	Natural And Restored Wetlands	MMFAAVVGHCFGRATPSLRNAPPRQSMEIVRRETIYPNRNAVQTNPATSKAQPLRFQRN*
Ga0070709_100988172	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAAVGHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSVRRSVG*
Ga0070709_106973251	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MFAAVVGHGSGRATPSLRHAPQRQSMEIVRRETIYRNRNAVQTNPATS
Ga0070714_1005833842	3300005435	Agricultural Soil	MFAAAVWHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATS
Ga0070710_114359271	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSFTAVVGHRSGRATPSLRDAPQRQSREKVCGETIYRNRNAVQTNPATSVCLTVGLPEEIAHIACAH
Ga0070711_1010022161	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MFAAVVGHGSGRATPSLRHAPQRQSMEIVRRETIYRNRNAVQTNPA
Ga0070706_1000438541	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MFAAVVGHRSGRATPSLRDAPQRQCTEIVGRETIYRNRNAVQ
Ga0068856_1018814792	3300005614	Corn Rhizosphere	MMFAAAVGHRSGRATPSLRDAPQQQSMEMVGTETIYR
Ga0068859_1025073951	3300005617	Switchgrass Rhizosphere	VTFAAVVGRRSARATPSLRDAPQWQSMEIVGRETIYRNRNAVQ
Ga0068858_1025436011	3300005842	Switchgrass Rhizosphere	MMFAAAVGHRSGRATPSLRDAPQQQSMELVGRETIYRNRNAVQ
Ga0075024_1008330872	3300006047	Watersheds	MMFAAVVGHCFGRATPSLRNAPPRQSREIVRRETIYRNRNAVQTNPATSHNGRAAGQVNRRFYS*
Ga0075019_101124081	3300006086	Watersheds	MMFAAVVGHCSSRATPSLRYAPPRQSMEIVRGETIYRNRNAVQSNPATS
Ga0070715_104517132	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAVVGHGSGRATPSLRHAPQRQSMEIVRRETIYRNRNAVQTNPATS
Ga0070715_106292211	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MFAAAVGHRSGRATPSLRDAPQQQSMELVGRETIYRNRNAVQ
Ga0075014_1000143124	3300006174	Watersheds	MMFAAVVGHCSSRATPSLRYAPPRQSMEIVRGETIYRNRNAVQSNPATSQRPKH*
Ga0097621_1000677054	3300006237	Miscanthus Rhizosphere	MMFAAVVGHRSGRATPSLRDAPQRQSMEIVRRETIYRNRNAVQTNPATS
Ga0097621_1021972592	3300006237	Miscanthus Rhizosphere	VKFAAVAEHRSSRAMPSLRDAPQRQSMERIGRGSIYRNRNAVQTKPATSPYRRSGLSSSKNEP
Ga0075425_1010789572	3300006854	Populus Rhizosphere	MMFAAAVGHRSGRASPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSHR*
Ga0105237_111565461	3300009545	Corn Rhizosphere	MFAAAVGHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSKLIY*
Ga0105249_110380573	3300009553	Switchgrass Rhizosphere	CMMFAAVVGHRSGRATPSLRDAPQRQSMEIVRRETIYRNRNAVQTNPATSSFAVVSFFS*
Ga0123355_110554642	3300009826	Termite Gut	VKFAAVAVHHFSRAMPSLRDAPQPQSTDRIGRESIYRDRNAVQTNP
Ga0134125_103350461	3300010371	Terrestrial Soil	MKFVAVAGRHSGRATPSLRDAPQRQSMERIGRESIYRDRNAVQTNPTTS
Ga0126381_1004067491	3300010376	Tropical Forest Soil	MKIAAVVGHRFGRATPSLRDAPQRQSMERNGRESIYRN*
Ga0150985_1091705021	3300012212	Avena Fatua Rhizosphere	MIFAIVRGHRSGRATPSLRDAPERQFTLTTGRGSTCRERNAVQTKPATSGRFEAFAAV
Ga0157320_10256562	3300012481	Arabidopsis Rhizosphere	MMFAAVVGHCCGRATPFLRNAPQRQSMEIVRRETIYRNRNAVQTNPA
Ga0164303_107781041	3300012957	Soil	MFAAAVGHRSGRATPSLRDAPQRQSMEIVGRDTIYRNRNAVQTNPATSQLCHAVQSM
Ga0164302_106535521	3300012961	Soil	MMFAAVVGHCCGRATPFLRNAPQRQSMEIVRRETIYRNRNAVQTNPATS
Ga0164304_108164421	3300012986	Soil	MMFAAVVGHCCGRATPFLRNAPQRQSMEIVRGETIYRNRNAVQTNPATSEFALKACASRC
Ga0157373_104732782	3300013100	Corn Rhizosphere	MFAAVVGHCFDRATPSLRDAPPRQSMEIVRRETIY
Ga0157369_103485781	3300013105	Corn Rhizosphere	MMFAAAVGHRSGRATPSLRDAPQRQSMEIVGRDTIY
Ga0157369_103485784	3300013105	Corn Rhizosphere	MTFAAVAGQRSDRATPSLRDAPQRQSMEIVGRDTIYRNRNAVQTNPATEVAGRI*
Ga0182024_106376911	3300014501	Permafrost	MNFAAVAGRRSGRAMPSLRNAPQQQSMEPTGRRSTYRWRNAVQTNPATS
Ga0181525_107613182	3300014654	Bog	VKFAAVAGHRSGRATPSLRDAPQRQSMERIGWESIYRDRNAVQTNPATSLTLRDLRDL
Ga0167644_10547163	3300015206	Glacier Forefield Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSLHQAT
Ga0132257_1003763304	3300015373	Arabidopsis Rhizosphere	MMFAAAVWHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSGYTVFQEGFLTI*
Ga0182033_102459861	3300016319	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSGFDPASAPGLWLST
Ga0182032_103157153	3300016357	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSWRALNRCR
Ga0182038_106916192	3300016445	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQANPATSVGHGERLRSKGPKLY
Ga0181505_105198692	3300016750	Peatland	VKFAAVAGHRSGRATPSLRDAPQRQSIETTGREAIYRHRNAVQTKPATS
Ga0187818_102669902	3300017823	Freshwater Sediment	VKFAAVAGHRSGRATPSLRDAPQRQSMERIGRESIYRDRNAVQTKPATSVENEASSTN
Ga0187819_103535532	3300017943	Freshwater Sediment	VKFAAVAGHRSGRATPSLRDAPQRQSMERIGRESIYRDRNAVQTKPA
Ga0193751_10742511	3300019888	Soil	MMFAAVVGHRSGRATPSLRDAPQRQCTEIVGRETIYRNRNAVQTNPATSIP
Ga0210395_102298751	3300020582	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSQG
Ga0210400_114271953	3300021170	Soil	MFAAAVGHRSGRATPSLRDAPQQQSMEIVGRETIYRNRNAVQTNPATSAFFCKAIKVQG
Ga0210405_102234883	3300021171	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSVFIIT
Ga0210405_109977142	3300021171	Soil	VTFAAVAGHRSGRATPSLRAAPQRQSIETTGRETIYRNRN
Ga0210408_102537431	3300021178	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQT
Ga0210396_101616803	3300021180	Soil	MFAAVVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATS
Ga0210396_102208561	3300021180	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSDYRHKP
Ga0210388_103105413	3300021181	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSF
Ga0213876_100811591	3300021384	Plant Roots	MMFAAVVGHCSGRATPSLRNAPPRQLMEIVGGETIYRNRNAVQTNPATSLFISP
Ga0210393_102659353	3300021401	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSE
Ga0210385_102117151	3300021402	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSLARHNAYLHM
Ga0210397_101144511	3300021403	Soil	MMFAAAVGHRSGRATPSLRDAPQQQSMEIVGRETIYRNRNAV
Ga0210397_103578673	3300021403	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSEFLPAK
Ga0210389_101999914	3300021404	Soil	MMFAAAVGHRSGRATPSLRDAPQQQSMEIVGRETIYRNRNAVQTNPATSIRQVRSDG
Ga0210387_102817843	3300021405	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRESIYRNRNAVQTNPATSLCVILA
Ga0210386_102704273	3300021406	Soil	MMFAAVVGHRSGRDTPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSWSTISGFLTGFTGLKTKRFSRS
Ga0210383_103432173	3300021407	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSIDSNIV
Ga0210394_109979072	3300021420	Soil	VTFAAVAGHRSGRATPSLRAAPQRQSTETTGRETIYRNRNAVQTNPATSMGRPGS
Ga0210394_110701121	3300021420	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSHRPTRH
Ga0210391_102523891	3300021433	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSQ
Ga0210390_113167321	3300021474	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSLCARILG
Ga0210392_101950771	3300021475	Soil	MMCAAAVGHRSGRATPSLRDAPQQQSMEIVGRETIYRNRNAVQTNPATSRYAAFRRRGH
Ga0210398_102541011	3300021477	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSLHQATDQRPRLGGIV
Ga0126371_108538321	3300021560	Tropical Forest Soil	MMVAAVVGHCPGRATPSLCNAPPRQLMEIVRRETIYRNRNAVQTKPATCLETRNGKNLLC
Ga0247693_10060663	3300024181	Soil	MMFAAAVGHRSGRATPSLRDAPQQQSMEIVGRETIYRNRNAVQTNPATSVVL
Ga0228598_10308081	3300024227	Rhizosphere	MKSAAVVGHRSGRATPSLRDAPQRHSMETVGWESIY
Ga0228598_11119952	3300024227	Rhizosphere	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSWSTIS
Ga0207692_100602104	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAAVGHRSGRATPSLRDAPQQQSMEIVRRETIY
Ga0207692_106856142	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAVVGHGSGRATPSLRHAPQRQSMEIVRRETIYRNRNAVQTNPATSIELSKLG
Ga0207692_108925462	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSFTAVVGHRSGRATPSLRDAPQRQSREKVCGETIYRNRNAVQTNPATSVRGG
Ga0207688_108698752	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VTFAAVVGRRSARATPSLRDAPQWQSMEIVGRETIYRNRNAVQTNPATSTPITREAE
Ga0207699_101650833	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAAVWHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSVRRSVG
Ga0207699_113857552	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAVVGHCFGRATPSLRNAPPWQSREIVRGENHLS
Ga0207684_100719124	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAVVGHRSGRATPSLRDAPQRQCTEIVGRETIYRNRNAVQTNPATSE
Ga0207663_102196001	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAAVWHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSI
Ga0207663_102862213	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAVVGHGSGRATPSLRHAPQRQSMEIVRRETIYRNRNAVQTNPATSVAP
Ga0207700_100701295	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAAVGHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSDG
Ga0207700_107018161	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAVVGHGSGRATPSLRHAPQRQSMEIVRRETIYRNRNAVQTNPATSAEA
Ga0207664_103025133	3300025929	Agricultural Soil	MMFAAAVWHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSHHRRMGGSA
Ga0207664_119477842	3300025929	Agricultural Soil	MMFAAVVGHCCGRATPFLRNAPQRQSMEIVRGETIYRNRNAVQTNPATSLATA
Ga0207665_101180552	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MMFAAAVGHRSGRATPSLRDAPQQQSMEMVGTETIYRNRNAVQTNPATSHDLAENAVVVW
Ga0207703_121193502	3300026035	Switchgrass Rhizosphere	MMFAAAVGHRSGRATPSLRDAPQQQSMELVGRETIYRNRNAVQTNPATSAGEGL
Ga0207702_106373582	3300026078	Corn Rhizosphere	MFAAAVGHRSGRATPSLRDAPQQQSMELVGRETIYRNRNAVQTNPATSRNA
Ga0207803_10186752	3300027000	Tropical Forest Soil	MKFAAVVGHRSGRATPSLRDAPQRQSMQTVGRETIYRNRNAAQTNPATSYRR
Ga0207726_10129873	3300027045	Tropical Forest Soil	MKFAAVVGHRSGRATPSLRDAPQRQSMQTVGRETIYRNRNAA
Ga0207762_10256611	3300027063	Tropical Forest Soil	MKFAAVVGHRSGRATPSLRDAPQRQSMQTVGRETIYRNRNA
Ga0209732_10116101	3300027117	Forest Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSW
Ga0207780_10301431	3300027313	Tropical Forest Soil	MKFAAVVGHRSGRATPSLRDAPQRQSMQTVGRETI
Ga0209008_10254951	3300027545	Forest Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSQNPGS
Ga0209517_105316823	3300027854	Peatlands Soil	MKFAAVVGHRSGRATPSLRDAPQRQSMETVGRETIYRNRNAVQTNPATSVQ
Ga0209169_104628701	3300027879	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSWSTISGFLTGF
Ga0209275_101203163	3300027884	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSEHGGSWL
Ga0209380_105032222	3300027889	Soil	MCAAAVGHRSGRATPSLRDAPQQQSMEIVGRETIYRNRNAVQTNPATS
Ga0209067_100904283	3300027898	Watersheds	MMFAAVVGHCSSRATPSLRYAPPRQSMEIVRGETIYRNRNAVQSNPATSALAAA
Ga0209006_109013872	3300027908	Forest Soil	MCAAAVGHRSGRATPSLRDAPQQQSMEIVGRETIYRN
Ga0209006_114559551	3300027908	Forest Soil	VTFAAVAGHRSGRATPSLRAVPQRQSTETTGRETIY
Ga0209698_101408814	3300027911	Watersheds	MMFAAVVGHCSSRATPSLRYAPPRQSMEIVRGETIYRNRNAVQSNPATSRYYP
Ga0265351_10239392	3300028020	Soil	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNA
Ga0265319_10462591	3300028563	Rhizosphere	MTFAAVAGQRSGRAAPSLRAAQQRQSMETTGRETIYRNRNAVQTKPATSLR
Ga0265318_100415594	3300028577	Rhizosphere	MTFAAVAGQRSGRAAPSLRAAPPRQSMETTGRETIYRNRNAVQTKPATSP
Ga0265318_102772221	3300028577	Rhizosphere	MFAAAVGHRSGRATPSRRDAPQQQSKEIVGRETIYR
Ga0302234_102845641	3300028773	Palsa	MKFAAVVGHRCGRATPSLRDAPQRQSMERIGWESIYRDRNAVQTNPATSIVP
Ga0302229_103830281	3300028879	Palsa	MNFATVGGRRSGRAAPSLRDTPQRQLTSTTGRTSIYRKRNAVQTKPAT
Ga0311352_106046041	3300029944	Palsa	MNFATVGARRSGRAAPSLRDTPQRQLTSKTGRTSIYRKRNAVQTKP
Ga0311353_103191153	3300030399	Palsa	VKFAAVAGHRSGRATPSLRDAPQRQSMERIGWESIYRDRN
Ga0311372_112299542	3300030520	Palsa	VKFAAVAGHRSGRATPSLRDAPQRQSMERIGWESIYRDRNAVQTNPATSDIAETVYHLGDLL
Ga0265765_10036224	3300030879	Soil	MKSAAVVGHRSGRATPSLRDAHQRQPTSTTGRASIYRKRN
Ga0302325_109814111	3300031234	Palsa	MNFATVGGRRSGRAAPSLRDTPQRQLTSKTGRTSIYRKRNAVQTKP
Ga0302324_1006295061	3300031236	Palsa	VKFAAVAGHRSGRATPSLRDAPQRQSMERIGWESIYRDRNAVQTNPATS
Ga0265332_103487522	3300031238	Rhizosphere	MTFAAVAGQRSGRAAPSLRAAPPRQSMETTGRETIYRNRNAVQTKPATSV
Ga0302326_107132351	3300031525	Palsa	MKFAAVVGHRSGRATPSLRDAPQRQSMETVGWETIYRNRNAVQTNPTTSSVNG
Ga0318534_104687782	3300031544	Soil	MMFAAVMGHCSGRAAPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSI
Ga0318528_107523412	3300031561	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSK
Ga0318560_103699091	3300031682	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSPRLSSAT
Ga0307474_113093501	3300031718	Hardwood Forest Soil	MMFAAAVGHRSGRATPSLRDAPQRQSMEIVGRETIY
Ga0318501_101777253	3300031736	Soil	MMFAAVMGHCSGRAAPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSG
Ga0318554_105258211	3300031765	Soil	MKIAAVVGHRFGRATPSLRDAPQRLSMERNGRESIYRN
Ga0306919_108439991	3300031879	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSGFDPASA
Ga0306923_104827021	3300031910	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETI
Ga0310910_101695494	3300031946	Soil	VKIAAVVGHRFGRATPSLRDAPQRLSMERNGRESI
Ga0318562_101220991	3300032008	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSVRLFVYWTRE
Ga0318505_105881062	3300032060	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSN
Ga0318553_101640951	3300032068	Soil	MKIAAVVGHRFGRATPSLRDAPQRLSMERNGRESI
Ga0308173_105009241	3300032074	Soil	MFAAVAGHRSGRATPSLRDGPATAIDGDSWQETIYRDRNAVQTNPATSVTVPPRLHLAV
Ga0318525_101038851	3300032089	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNAVQTNPATSGCLRVCNIF
Ga0335078_119472253	3300032805	Soil	MMFAAVVGHCSSRATPSLRNAPPRQSREIVRRETIYRNRNA
Ga0335080_103678711	3300032828	Soil	MMFAAAVGHRSGRATPSLRDAPQPQSIEMVGRETIYRNRNAVQTNAATSFLGIEKR
Ga0335081_108995872	3300032892	Soil	MTFAAAVGHRFGRATPSLRDAPQRQSMDIVGRETIYRNRNAVQTNPAISHRTNHSSRRSQCQETS
Ga0335072_104169873	3300032898	Soil	MFAAVVGRCFGRAMPSLRNAPPRQSMEIVCGETIYRNRNAVQTNPAISLHHVEPARVLGRVMELDAL
Ga0335072_104511201	3300032898	Soil	MMFAAVVGHCCGRATPSLRNAPPRQSREIVCGETIYRNRNAVQTNPANSARHARPAP
Ga0310914_103992443	3300033289	Soil	MMFAAVVGHCSGRATPSLRNAPPRQPREIVRRETIYRNRNA
Ga0316214_10725792	3300033545	Roots	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSKYQ
Ga0316212_10104731	3300033547	Roots	MMFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPAT
Ga0370515_0087795_2_109	3300034163	Untreated Peat Soil	MMFAAAVGHRSGRATPSRRGAPQRQSMEIVRRETIY
Ga0370515_0435144_447_551	3300034163	Untreated Peat Soil	MMFAAAVGHRSGRATPTLSDAPQRQSIETIGRETI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052222

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences