Metagenome / Metatranscriptome Family F050386

Overview

Basic Information

• Family ID: F050386
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 145
• Average Sequence Length: 43 residues
• Representative Sequence: LRGPRKSYLWKRISEVHKLMVDIQTAHAKLGSQDGNSREH
• Number of Associated Samples: 134
• Number of Associated Scaffolds: 145

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 13.99 %
• % of genes near scaffold ends (potentially truncated): 81.38 %
• % of genes from short scaffolds (< 2000 bps): 82.07 %
• Associated GOLD sequencing projects: 133
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (70.345 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.897 % of family members)
• Environment Ontology (ENVO): Unclassified (27.586 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (42.069 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 47.06%
  β-sheet: 0.00%
  Coil/Unstructured: 52.94%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 145 Family Scaffolds
PF00961	LAGLIDADG_1	1.38
PF03175	DNA_pol_B_2	1.38
PF00499	Oxidored_q3	0.69

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 145 Family Scaffolds
COG0839	NADH:ubiquinone oxidoreductase subunit 6 (chain J)	Energy production and conversion [C]	0.69

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	29.66 %
Unclassified	root	N/A	70.34 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	29.66 %
Unclassified	root	N/A	70.34 %

Level 3

Name	Rank	Taxonomy	Distribution
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	29.66 %
Unclassified	root	N/A	70.34 %

Level 4

Name	Rank	Taxonomy	Distribution
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	29.66 %
Unclassified	root	N/A	70.34 %

Level 5

Name	Rank	Taxonomy	Distribution
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	29.66 %
Unclassified	root	N/A	70.34 %

Level 6

Name	Rank	Taxonomy	Distribution
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	29.66 %
Unclassified	root	N/A	70.34 %

Level 7

Name	Rank	Taxonomy	Distribution
Basidiomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	29.66 %
Unclassified	root	N/A	70.34 %

Level 8

Name	Rank	Taxonomy	Distribution
Agaricomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina	29.66 %
Unclassified	root	N/A	70.34 %

Level 9

Name	Rank	Taxonomy	Distribution
Agaricomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	29.66 %
Unclassified	root	N/A	70.34 %

Level 10

Name	Rank	Taxonomy	Distribution
Agaricomycetes incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis	8.28 %
Agaricomycetidae	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae	16.55 %
Unclassified	root	N/A	70.34 %

Level 11

Name	Rank	Taxonomy	Distribution
Agaricales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	16.55 %
Cantharellales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales	0.69 %
Polyporales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales	6.90 %
Thelephorales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Thelephorales	0.69 %
Unclassified	root	N/A	70.34 %

Level 12

Name	Rank	Taxonomy	Distribution
Ceratobasidiaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae	0.69 %
Meruliaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Meruliaceae	5.52 %
Polyporaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae	0.69 %
Thelephoraceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Thelephorales → Thelephoraceae	0.69 %
Tricholomatineae	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae	16.55 %
Unclassified	root	N/A	70.34 %

Level 13

Name	Rank	Taxonomy	Distribution
Lyophyllaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae	16.55 %
Phlebia	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Meruliaceae → Phlebia	5.52 %
Polyporus	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Polyporus	0.69 %
Rhizoctonia	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia	0.69 %
Thelephora	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Thelephorales → Thelephoraceae → Thelephora	0.69 %
Unclassified	root	N/A	70.34 %

Level 14

Name	Rank	Taxonomy	Distribution
Hypsizygus	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus	16.55 %
Phlebia radiata	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Meruliaceae → Phlebia → Phlebia radiata	5.52 %
Polyporus grammocephalus	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Polyporus → Polyporus grammocephalus	0.69 %
Rhizoctonia solani	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia → Rhizoctonia solani	0.69 %
Thelephora ganbajun	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Thelephorales → Thelephoraceae → Thelephora → Thelephora ganbajun	0.69 %
Unclassified	root	N/A	70.34 %

Level 15

Name	Rank	Taxonomy	Distribution
Hypsizygus marmoreus	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	16.55 %
Phlebia radiata	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Meruliaceae → Phlebia → Phlebia radiata	5.52 %
Polyporus grammocephalus	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Polyporus → Polyporus grammocephalus	0.69 %
Rhizoctonia solani	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia → Rhizoctonia solani	0.69 %
Thelephora ganbajun	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Thelephorales → Thelephoraceae → Thelephora → Thelephora ganbajun	0.69 %
Unclassified	root	N/A	70.34 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2162886013|SwBSRL2_contig_1239357	Not Available	2488
3300000305|bgg_mtDRAFT_1051402	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1304
3300000305|bgg_mtDRAFT_1055081	Not Available	637
3300000545|CNXas_1009133	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	699
3300001152|JGI12699J13341_100410	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1531
3300001159|JGI12650J13346_1000196	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	2044
3300002654|Ga0005464J37254_102373	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	2311
3300002655|Ga0005476J37264_101936	Not Available	2316
3300002668|Ga0005482J37270_106670	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1021
3300003161|Ga0006765J45826_102451	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	2267

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.97%
Host-Associated	Host-Associated	11.03%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.97%
Fungi	Host-Associated → Fungi	0.69%
Human	Host-Associated → Human	1.38%
Plants	Host-Associated → Plants	8.97%
Terrestrial	Environmental → Terrestrial	80.00%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Human → Digestive System	1.38%
Freshwater	Environmental → Aquatic → Freshwater	6.90%
Marine	Environmental → Aquatic → Marine	0.69%
Mycelium	Host-Associated → Fungi → Mycelium	0.69%
Phyllosphere	Host-Associated → Plants → Phyllosphere	6.90%
Plant Litter	Environmental → Terrestrial → Plant Litter	4.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.69%
Roots	Host-Associated → Plants → Roots	0.69%
Sediment	Environmental → Aquatic → Sediment	1.38%
Soil	Environmental → Terrestrial → Soil	75.86%

Type

Habitat	Taxonomy	Distribution
Creek	Environmental → Aquatic → Freshwater → Creek	0.69%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.69%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.38%
Loam	Environmental → Terrestrial → Soil → Loam	11.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.38%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	6.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	4.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.38%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.69%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.38%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.69%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.69%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.03%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	6.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.14%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	4.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.38%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.69%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.69%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.69%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.69%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.69%

Habitat

Habitat	Taxonomy	Distribution
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.69%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.69%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.38%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.14%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.14%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.38%
Leaf Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter	1.38%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.69%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.69%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.69%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.69%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.76%
Permafrost Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil	0.69%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.76%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.69%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.55%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.38%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.69%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.69%
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	6.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.21%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300000305	Blue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - Combined Assembly	Host-Associated
3300000545	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled	Host-Associated
3300001152	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1	Environmental
3300001159	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2	Environmental
3300002654	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF113 (Metagenome Metatranscriptome, Counting Only)	Environmental
3300002655	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF125 (Metagenome Metatranscriptome, Counting Only)	Environmental
3300002668	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF131 (Metagenome Metatranscriptome, Counting Only)	Environmental
3300003161	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_8 (Metagenome Metatranscriptome, Counting Only)	Host-Associated
3300004132	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF240 (Metagenome Metatranscriptome)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0434.00005570	2162886013	Switchgrass Rhizosphere	IIYKIYVIRFRLRGPRKSYRWKRISKVHKLMIDIQTAHAKLGSQDGNSR
bgg_mtDRAFT_10514024	3300000305	Host-Associated	LRGSRKSYQWKRISELHKLMVDIQTAHAKLGSQDGNSR
bgg_mtDRAFT_10550812	3300000305	Host-Associated	LRGPRKSYLWKRISELHKLMVDIQTTQAKLGSQDGNS
CNXas_10091331	3300000545	Quercus Rhizosphere	LRGSRKSYQWKRISEVHKLMVDIQTAHAKLGSRDGNSREHEIKVPNDY*
JGI12699J13341_1004101	3300001152	Forest Soil	LRGSRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY*
JGI12650J13346_10001961	3300001159	Forest Soil	LRGPRKSYLWKRISEVHKLMVDIQTAHAKLGSQDGNSREH*
Ga0005464J37254_1023732	3300002654	Forest Soil	LRGPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY*
Ga0005476J37264_1019361	3300002655	Forest Soil	LRGSRKSYQWKRISEVHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY*
Ga0005482J37270_1066701	3300002668	Forest Soil	LRGPRKSYQWKRISEVHKLMVDIQTAHAKLGSRDGNSREHEIKVPNDY*
Ga0006765J45826_1024511	3300003161	Avena Fatua Rhizosphere	LWGPRKSYQWKRNSEVHKLMIDIQTAHDKLGSQDGNSREHEIKVPNDY*
Ga0058902_10239962	3300004132	Forest Soil	LWGPRKSYLWKRISELHKLMVDIQTTHAKLGSQDGNSREH*
Ga0058884_10004691	3300004135	Forest Soil	LRGSKKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHDIKVPNDY*
Ga0058884_13972021	3300004135	Forest Soil	KFYTFRLRGSRKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH*
Ga0068961_13302031	3300004612	Peatlands Soil	MWGPRKSYLWKRISELHKLVVANQTAHAKLGSQDGNSREH*
Ga0070732_100229661	3300005542	Surface Soil	LRGSKKSYQWKRISEVHKLMVDIQTAHDKLGSQDGNSREHEIKVPNDY*
Ga0070761_100165401	3300005591	Soil	LRGSRKSYQWKRISEVHKLMLDIQTIHAKLNSQDGNSREHRSRSQMIIK*
Ga0075039_10538451	3300006423	Permafrost Soil	PRKSYHWNPNSKLHKLLVDIQTTNAKLSSQDGNSREH*
Ga0075039_10863421	3300006423	Permafrost Soil	MTFSLRGPRKSYHWNPNSKLHKLLVDIQTTNAKLSSQDGNSR
Ga0075039_11230921	3300006423	Permafrost Soil	FSLRGPRKSYHWNPNSKLHKLLVDIQTTNAKLSSQDGNSREH*
Ga0075037_11609691	3300006426	Permafrost Soil	SLRGPRKSYHWNPNSKLHKLLVDIQTTNAKLSSQDGNSREH*
Ga0099795_101261991	3300007788	Vadose Zone Soil	DLVNRVKLFYAFRLRGPRKSYLWKRISELHKLMVDIQTAQAKLGSQDGNSREH*
Ga0104322_1073481	3300007819	Permafrost Soil	FRLRGSRKSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH*
Ga0116120_11323501	3300009641	Peatland	KSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY*
Ga0127490_10298201	3300010093	Grasslands Soil	NKFYTFRLRGSRKSYLWKRISELHKLMVDIQTTQAKLGSQDGNSREHEIKVPNDY*
Ga0127482_10830612	3300010126	Grasslands Soil	EVHKLMIDIHTAHDKLGSQDGNSREHEIKVPNDY*
Ga0127484_11730151	3300010134	Grasslands Soil	FRLWGPRKSYQWKRNSEVHKLMIDIQTAHDKLGSQDGNSREHEIKVPNDY*
Ga0126351_11955332	3300010860	Boreal Forest Soil	SRKSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH*
Ga0126357_11858311	3300010864	Boreal Forest Soil	MTFSLRGPRKSYHWNPNSKLHKLLVDIQTTNAKLSSQDGNSREH*
Ga0102750_101784711	3300010870	Soil	RKSYQWKRISEVHKLVVKFQTAHDKLSSQDGNSREHN*
Ga0150983_120540851	3300011120	Forest Soil	SRKSYLWKRISELHKLMIDIQTAHAKLGSQDGNSREH*
Ga0126317_105282171	3300011332	Soil	SYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREH*
Ga0137430_11095062	3300012041	Soil	GSLKSYHWNSNSKLHKLLVDIQTANAQLSSQDGNSREH*
Ga0153953_10169881	3300012154	Attine Ant Fungus Gardens	RGSRKSYQWKRNSELHKLIIDIQTIHDKLNSQDGNSREHRSRSQMIIK*
Ga0137353_10707821	3300012157	Soil	GPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY*
Ga0137383_109753191	3300012199	Vadose Zone Soil	RKSYLWKRISELHKLMVDIQTTHAKLGSQDGNSREHRSRSQMVVQ*
Ga0137376_103703401	3300012208	Vadose Zone Soil	LRGSRKSYLWKRISELHKLMIDIQTIHAKLNSQDGNSREH
Ga0134028_12142591	3300012224	Grasslands Soil	RKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH*
Ga0137387_106921491	3300012349	Vadose Zone Soil	KSYLWKRISELHKLMIDIQTAHDKLGSQDGNSREH*
Ga0134025_10940152	3300012378	Grasslands Soil	KSYLWKRISEVHKLMVDIQTAHAKLGSQDGNSREH*
Ga0134047_10855121	3300012380	Grasslands Soil	RNSEVHKLMIDIQTAHDKLGSQDGNSREHEIKVPNDY*
Ga0137419_109565812	3300012925	Vadose Zone Soil	KSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH*
Ga0137419_110786371	3300012925	Vadose Zone Soil	NSELHKLMVDIQTAHAKLGSQDGNSREHMIKVPNDY*
Ga0182032_109133921	3300016357	Soil	MFKLWGPQKSYLWKSISEVHKLMLDIQTIKDKLDSQDGNSREHRSRSQMIIK
Ga0193123_102571672	3300019039	Marine	NKFNLNNYLFKFYTFRLRGPRKSYLWKRISELHKLMVDIQTVHAKLDSQDGNSREH
Ga0184569_1047451	3300019168	Soil	LLGVQVEGTWKSYLWKRNSELHKLMVDIQTAHAKLGSQDGNSREH
Ga0184603_1096491	3300019192	Soil	GSRKSYLWKRISELHKSMIDIQTVHAKLDSQDGNSREH
Ga0184648_11263821	3300019249	Groundwater Sediment	RGPRKSYLWKRISELHKLMVDIQTIHAKLDSQDGNSREHRSRSQMIVK
Ga0184641_13018191	3300019254	Groundwater Sediment	MRGLRKSYLWSRISELHKLIIDIQTALAKLRSQDGNSRE
Ga0181504_13065371	3300019258	Peatland	LRGPRKSYLWKRISEVHKLMVDIQTAHAKLGSQDGNS
Ga0193727_10183641	3300019886	Soil	MKEEFRLRGPRKSYLWKRISEVHKLMVDIQTAHAKLSSQDGNSREHEIKVPNDY
Ga0193716_12540331	3300020061	Soil	AFRLRGPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0180107_13457331	3300020064	Groundwater Sediment	KSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH
Ga0179592_100024881	3300020199	Vadose Zone Soil	TYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0210403_105260301	3300020580	Soil	MQIKLITNISYAFRLRGLRKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH
Ga0210404_107519001	3300021088	Soil	YQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0179583_10843091	3300021286	Vadose Zone Soil	KRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKLPNDY
Ga0179958_10478241	3300021315	Vadose Zone Soil	FKFYSFRLRGSRKSYLWKRISELHKLMVDIQTIQAKLGSQDGNSR
Ga0210387_105791841	3300021405	Soil	LRGPRKSYQWKRISEVHKLMVDIQTAHAKLGSRDGN
Ga0193709_10675291	3300021411	Soil	FRLRGPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHRSRSQMIVK
Ga0222624_10537671	3300021951	Groundwater Sediment	LRGPRKSYHWNPISKLHKLLVDIQTTNAKLSSQDGNSR
Ga0222624_12342281	3300021951	Groundwater Sediment	SLRGPRKSYHWNPISKLHKLLVDIQTTNAKLSSQDGNSREHRSRSQMIIK
Ga0222624_13049001	3300021951	Groundwater Sediment	SLRGPRKSYHWNPISKLHKLLVDIQTTNAKLSSQDGNSREH
Ga0242645_10002231	3300022501	Soil	KSYLWKRNSELHKLMVDIQTAHAKLGSQDGNSREH
Ga0242648_10266281	3300022506	Soil	RISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0222729_10004841	3300022507	Soil	KSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH
Ga0242659_10469101	3300022522	Soil	RGPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHESRSRMIIK
Ga0242664_10006601	3300022527	Soil	LRGPRKSYQWKRISEVHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0242658_10324661	3300022530	Soil	LRGSRKSYLWKRISELHKLMIDIQTAHAKLGSQDGNSREH
Ga0242661_10043691	3300022717	Soil	FRLRGSRKSYQWKRNSELHKLIIDIQTIHDKLNSQNGNSREHGSRSRMIIK
Ga0242665_100841691	3300022724	Soil	FRLRGSRKSYLWKRISELHKSMIDIQTVHAKLDSQDGNSREH
Ga0242654_104140591	3300022726	Soil	KKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0233358_1004401	3300023014	Soil	SRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0233344_10009622	3300023045	Leaf Litter	MTEGMKKIEAFRLWGPRKSYQWKRNSEVHKLMVDIQTAHDKLGSQDGNSREHEIKVPNDY
Ga0233331_10001461	3300023052	Leaf Litter	MAFRLRGPRKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0247784_11689771	3300023270	Plant Litter	NNIIFYTFRLRGPRKSYLWKRISELHKLMIDIQTAHAKLGSQDGNSREHRSRSQMIVK
Ga0247537_1003271	3300023533	Soil	FRLRGPRKSYLWKRISEVHKLMVDIQTAHAKLGSQDGNSREHRSRSQMIIK
Ga0247533_1036191	3300023675	Soil	GPRKSYLWKRISEVHKLMVDIQTAHAKLGSQDGNSREHRSRSQMIIK
Ga0228704_1210371	3300023691	Freshwater	MXKSYQWKVISEXHKLMVDIQTAHDKLGSQDGNSREHVSRSQMIIKXN
Ga0247672_10337351	3300024187	Soil	IKNLNTFRLRGSRKSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH
Ga0247677_10689562	3300024245	Soil	NEVFLICFRLRGPRKSYLWKRISELHKLMIDIQTAHAKLGSQDGNSREH
Ga0209154_10937051	3300026317	Soil	WGPRKSYLWKRISELHKLLVDIQTVHAKLGSQDGNSREHRSRSQMIVK
Ga0208997_10099901	3300027181	Forest Soil	EAFRLRGPRKSYQWKRISEVHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0208999_10003283	3300027303	Forest Soil	WKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPHDY
Ga0209421_11278081	3300027432	Forest Soil	RLRGSRKSYQWKRISEVHKLMVDIQTAHAKLGSRDGNSREHEIKVPNDY
Ga0208985_10102041	3300027528	Forest Soil	EFRLWGPRKSYQWKRNSEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0208982_10680381	3300027574	Forest Soil	RNSEVHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0208988_11289601	3300027633	Forest Soil	KSYQWKRNSEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0209007_10365521	3300027652	Forest Soil	RKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0302047_101581161	3300028554	Soil	RKSYQWKRISEVHKLVVKFQTAHDKLSSQDGNSREHN
Ga0247638_10003601	3300030551	Soil	LRGPRKSYLWKRISELHKLMIDIQTAHAKLGSQDGNSREH
Ga0247639_10576071	3300030585	Soil	LRGPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHESRSQMIIK
Ga0247626_10281231	3300030591	Soil	FRLRGPRKSYLWKRISELHKLMVDIQTIHAKLDSQDGNSREHRSRSQMIVK
Ga0247612_11616021	3300030592	Soil	WRRISELHKLIVDIQTTLAKLSSQDGNSREHRIKVPNDY
Ga0247617_10234791	3300030684	Soil	FRLWGPRKSYLWKRISELHKLMLDIQTAHAKLGSQDGNSREH
Ga0247617_10542471	3300030684	Soil	FRLRGLRKSYLWKRISELHKLMVDIQTIHAKLDSQDGNSREH
Ga0265459_121968241	3300030741	Soil	SELHKLVVDIQTAHAKLGSQDGNSREHRIKVPNDY
Ga0265461_100275601	3300030743	Soil	AFRLRGPRKSYLWKRISELHKLKIDIQTAHAKLGSQDGNSREH
Ga0265722_1008791	3300030761	Soil	LRGPRKSYLWKRISEVHKLMVDIQTTHAKLGSQDGNSREHRSRSQMIIK
Ga0075402_101316921	3300030777	Soil	MFRLRGSRKSYLWKRISELHKLMVDIQTTHAKLGSQDGNSREHRSRSQMIVK
Ga0075398_100527471	3300030778	Soil	KSYLWKRISELHKLKIDIHPIYDKIDRGDGNSREH
Ga0102758_110408231	3300030784	Soil	MRGPRKSYQWKRISEVHKLLVKFQTAHDKLSSQDGNSREHN
Ga0315871_1012651	3300030827	Plant Litter	TFRLRGPRKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0315871_1013521	3300030827	Plant Litter	LRGPRKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSR
Ga0308205_10003481	3300030830	Soil	MFRLRGPRKSYLWKRISELHKLMIDIQTAHAKLGSQDGNSREH
Ga0075389_100939601	3300030852	Soil	KKIFLNAFRLRGSRKSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH
Ga0102759_10628951	3300030858	Soil	MRGPRKSYLWKRISELHKLMVDIQTAQAKLGSQDGNSREH
Ga0265766_10220051	3300030863	Soil	VQVEGTWKSYLWKRNSELHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0265723_10069811	3300030872	Soil	KSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0265764_1062411	3300030882	Soil	LRGPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGN
Ga0265733_1002751	3300030887	Soil	LIVHLYLLGVQVEGTWKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH
Ga0075386_100999951	3300030916	Soil	KKNFLNAFRLRGSRKSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH
Ga0075401_100823991	3300030935	Soil	ISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0075401_101215461	3300030935	Soil	LRGSRKSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH
Ga0138302_18572151	3300030937	Soil	GSRKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH
Ga0075376_100836871	3300030968	Soil	LNAFRLRGSRKSYLWKRISELHKLMIDIQTVHAKLDSQDGNSREH
Ga0308196_10098531	3300030989	Soil	RLRGPRKSYLWKRISELHKLMIDIQTAHAKLGSQDGNSREH
Ga0102756_14569161	3300031014	Soil	KSYQWKRISEVHKLLVKFQTAHDKLSSQDGNSREHN
Ga0265744_1132911	3300031017	Soil	RNSEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0138301_12056611	3300031022	Soil	RKSYQWKXNSELHKLMVDIQTAHAKLGSQDGNSREHMIKVPNDY
Ga0265724_1031931	3300031024	Soil	SEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0265747_1037631	3300031044	Soil	RKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH
Ga0074029_11176961	3300031051	Soil	RGSRKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH
Ga0170834_1064429791	3300031057	Forest Soil	LYFKFYTFRLRGLRKSYLWKRISELHKLMVDIQTAQAKLGSQDGNSREH
Ga0308189_101057431	3300031058	Soil	MQIKLITRPFYAFRLWGPRKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH
Ga0315823_1071711	3300031105	Plant Litter	FRLRGPRKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0102761_101866803	3300031411	Soil	TWKSYLWKRISELRKLMVDIQTAHAKLGSQDGNSREH
Ga0308194_102737641	3300031421	Soil	RKSYLWKRISELHKLMVDIQTIHAKLDSQDGNSREHRSRSQMIVK
Ga0170818_1008118431	3300031474	Forest Soil	RLRGPRKSYLWKRISELHKLMVDIQTAPAKLGSQEGNSRKH
Ga0310114_1183782	3300031678	Soil	GPRKSYLWKRISELHKLMVDIQTAHAKLGSQDGNSREH
Ga0310114_1237491	3300031678	Soil	AFRLRGPRKSYLWKRISEVHKLMVDIQTAHAKLGSQEGNSREHRSRSQMIIK
Ga0310686_1036188181	3300031708	Soil	AFRLRGPRKSYLWKRISEVHKLMVDIQTAHAKLGSQDGNSREHRSRSQMIIK
Ga0316044_1189581	3300031810	Soil	PRKSYLWKRISELHKLMVDIQTTHAKLGSQDGNSREH
Ga0247532_1015931	3300031827	Soil	GPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0321339_11373611	3300032551	Switchgrass Phyllosphere	VKILQWISNSELHKLMIDIQTIHAKLDSQDGNSREH
Ga0214501_12045391	3300032625	Switchgrass Phyllosphere	WYCAFRLRGSSKSYQWNLNSEVHKLMLDIQTAHDKLSSQDENSREHALRSQMIIK
Ga0314753_10374301	3300032757	Switchgrass Phyllosphere	RKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSREHESRSQMIIK
Ga0314754_10479051	3300032760	Switchgrass Phyllosphere	LVMRGPRKSYLWRTISELHKLIVDIQTTLAKLSSQDGNSREHEIKVPNDY
Ga0314745_11086571	3300032812	Switchgrass Phyllosphere	FRLRGPRKSYLWKRISELHKLMVDIQTTHAKLGSQDGNSREH
Ga0314739_10566651	3300032913	Switchgrass Phyllosphere	GPRKSYLWKRISELHKLMIDIQTVHAKLDSRDGNSREH
Ga0314749_10898081	3300032915	Switchgrass Phyllosphere	GPRKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0314741_11009751	3300032934	Switchgrass Phyllosphere	RKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0314738_10595981	3300032959	Switchgrass Phyllosphere	SKSYQWNLNSEVHKLMVDIQTAHAKLGSRDGNSREH
Ga0314760_11222901	3300033530	Switchgrass Phyllosphere	GSRKSYLWKRISELHKLIIDIQTAHAKLGSRDGNSREH
Ga0316215_10094611	3300033544	Roots	LRGSRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGN
Ga0314784_009569_1217_1333	3300034663	Soil	GPRKSYLWKRISELHKLMVDIQTIHAKLDSQDGNSREH