Metagenome / Metatranscriptome Family F050376

Basic Information
Family ID	F050376
Family Type	Metagenome / Metatranscriptome
Number of Sequences	145
Average Sequence Length	41 residues
Representative Sequence	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE
Number of Associated Samples	107
Number of Associated Scaffolds	145

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.44 %
% of genes near scaffold ends (potentially truncated)	41.38 %
% of genes from short scaffolds (< 2000 bps)	73.79 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (50.345 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (21.379 % of family members)
Environment Ontology (ENVO)	Unclassified (46.897 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (55.862 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 12199990798 2JGI12547J11936_10334782 3JGI12421J11937_100198153 4JGI12421J11937_101401871 5B570J29589_10307441 6B570J40625_1000003804 7B570J40625_1000156301 8JGI25908J49247_100204716 9JGI25922J50271_100491711 10JGI25914J50564_100210038 11JGI25914J50564_100519843 12JGI25921J50272_100014981 13JGI25930J51415_10081619 14Ga0065166_103451891 15Ga0007763_115895314 16Ga0070374_100955091 17Ga0070374_101621073 18Ga0070374_103171125 19Ga0049085_100333618 20Ga0049085_101700971 21Ga0078894_110401473 22Ga0078894_111430023 23Ga0070743_100398245 24Ga0070743_100467043 25Ga0070744_100195135 26Ga0070744_100418215 27Ga0070744_101108571 28Ga0070744_102012583 29Ga0102861_12217511 30Ga0102874_11451991 31Ga0102874_11465061 32Ga0102874_12635974 33Ga0102875_12599561 34Ga0102818_10635611 35Ga0102915_10362161 36Ga0102923_11531981 37Ga0102872_12046784 38Ga0102878_11229641 39Ga0102878_11731692 40Ga0102865_12646301 41Ga0102902_11723005 42Ga0102855_10373801 43Ga0102859_10068279 44Ga0102859_11703051 45Ga0105737_12129693 46Ga0114340_11943951 47Ga0114355_12390932 48Ga0114336_11041794 49Ga0102816_10275304 50Ga0102829_13144141 51Ga0102864_10854541 52Ga0102854_10463391 53Ga0102885_10281735 54Ga0114978_107570354 55Ga0114966_1000813515 56Ga0114975_1001237417 57Ga0114969_104603283 58Ga0114969_105941451 59Ga0114974_100623671 60Ga0136551_100067412 61Ga0136551_10078121 62Ga0136551_10347941 63Ga0133913_116196233 64Ga0138308_1439863 65Ga0119951_100023614 66Ga0157208_100019434 67Ga0157208_100036896 68Ga0157208_100076394 69Ga0157598_10550745 70Ga0157599_11136611 71Ga0157616_12358831 72Ga0138290_10204521 73Ga0138284_13872871 74Ga0163199_10169097 75Ga0181356_11198271 76Ga0181356_11199711 77Ga0181359_10681514 78Ga0211732_137111917 79Ga0211736_107427771 80Ga0211726_1040010911 81Ga0211726_108583163 82Ga0211729_108811812 83Ga0207934_100128912 84Ga0208718_100037211 85Ga0194048_100070531 86Ga0194048_1001502711 87Ga0222714_100296226 88Ga0222714_100668016 89Ga0222712_1000474323 90Ga0222712_101223381 91Ga0222712_104545681 92Ga0212124_101356945 93Ga0214917_104612383 94Ga0214921_1000637921 95Ga0214921_1005632510 96Ga0214921_104897462 97Ga0244777_100904539 98Ga0244777_103867184 99Ga0244775_1000187125 100Ga0244775_1000333027 101Ga0244775_106186041 102Ga0244775_109078503 103Ga0244776_102844264 104Ga0244776_105342224 105Ga0244776_106325941 106Ga0255223_10169737 107Ga0208783_103409472 108Ga0255065_10538611 109Ga0255115_10882982 110Ga0255081_10209311 111Ga0208800_10366161 112Ga0208922_10640941 113Ga0208177_10870401 114Ga0208923_10080571 115Ga0208311_11270164 116Ga0209552_10295121 117Ga0255118_10307792 118Ga0255120_10468481 119Ga0255117_10276405 120Ga0208942_10307531 121Ga0208133_10114091 122Ga0208133_10158116 123Ga0209356_10277091 124Ga0209551_11935492 125Ga0209551_11991432 126Ga0209599_1000236416 127Ga0209297_11501391 128Ga0209596_100586126 129Ga0209444_102672321 130Ga0209770_100143164 131Ga0209770_102460391 132Ga0209500_101621371 133Ga0209550_102508482 134Ga0247723_11463611 135Ga0334977_0022969_3446_3553 136Ga0334977_0154314_19_147 137Ga0335019_0486554_3_125 138Ga0335028_0048447_2765_2887 139Ga0335020_0175801_2_118 140Ga0335022_0263720_880_996 141Ga0335029_0003158_1150_1278 142Ga0335053_0640784_488_604 143Ga0335058_0085910_1712_1834 144Ga0335049_0134846_955_1083 145Ga0335052_0240202_1_114
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 12199990798 2JGI12547J11936_10334782 3Ga0136551_10078121 4Ga0157208_100036896 5Ga0163199_10169097 6Ga0244775_109078503 7Ga0255118_10307792
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42 1JGI25908J49247_100204716 2JGI12547J11936_10334782 3JGI25922J50271_100491711 4JGI25921J50272_100014981 5Ga0065166_103451891 6Ga0070374_101621073 7Ga0049085_101700971 8Ga0136551_100067412 9Ga0136551_10347941 10Ga0157208_100019434 11Ga0157208_100036896 12Ga0163199_10169097 13Ga0211726_1040010911 14Ga0222714_100296226 15Ga0222714_100668016 16Ga0222712_104545681 17Ga0214921_1005632510 18Ga0335049_0134846_955_1083
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.57% β-sheet: 0.00% Coil/Unstructured: 51.43%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Pfam ID	Name	% Frequency in 145 Family Scaffolds
PF06067	DUF932	3.45
PF13640	2OG-FeII_Oxy_3	2.07
PF04488	Gly_transf_sug	1.38
PF02867	Ribonuc_red_lgC	1.38
PF13884	Peptidase_S74	0.69
PF07463	NUMOD4	0.69
PF01844	HNH	0.69
PF04820	Trp_halogenase	0.69

COG ID	Name	Functional Category	% Frequency in 145 Family Scaffolds
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	1.38
COG3774	Mannosyltransferase OCH1 or related enzyme	Cell wall/membrane/envelope biogenesis [M]	1.38

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	49.66 %
Unclassified	root	N/A	50.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	0.69 %
Unclassified	root	N/A	50.34 %
Viruses	superkingdom	All Organisms → Viruses	48.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.69 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	20.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.28 %
Unclassified	root	N/A	50.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.69 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	20.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.28 %
Unclassified	root	N/A	50.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.28 %
Unclassified	root	N/A	50.34 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	20.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.69 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	20.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.28 %
Unclassified	root	N/A	50.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.69 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.28 %
Unclassified	root	N/A	50.34 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	7.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.69 %
Freshwater phage uvFW-CGR-AMD-COM-C403	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	7.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.28 %
Unclassified	root	N/A	50.34 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10.34 %

Scaffold	Taxonomy	Length	IMG/M Link
2199352004\|2199816734	Not Available	6242	Open in IMG/M
3300000736\|JGI12547J11936_1033478	All Organisms → Viruses → Predicted Viral	1131	Open in IMG/M
3300000756\|JGI12421J11937_10019815	All Organisms → Viruses → Predicted Viral	2488	Open in IMG/M
3300000756\|JGI12421J11937_10140187	Not Available	608	Open in IMG/M
3300002279\|B570J29589_1030744	Not Available	501	Open in IMG/M
3300002835\|B570J40625_100000380	Not Available	72625	Open in IMG/M
3300002835\|B570J40625_100015630	Not Available	13272	Open in IMG/M
3300003277\|JGI25908J49247_10020471	All Organisms → Viruses → Predicted Viral	1972	Open in IMG/M
3300003413\|JGI25922J50271_10049171	Not Available	951	Open in IMG/M
3300003429\|JGI25914J50564_10021003	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1970	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.62%
Terrestrial	Environmental → Terrestrial	1.38%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.38%
Freshwater	Environmental → Aquatic → Freshwater	64.14%
Marine	Environmental → Aquatic → Marine	34.48%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	1.38%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	21.38%
Lake	Environmental → Aquatic → Freshwater → Lake	30.34%
Lentic	Environmental → Aquatic → Freshwater → Lentic	24.83%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.07%
Pond	Environmental → Aquatic → Freshwater → Pond	2.07%
River	Environmental → Aquatic → Freshwater → River	4.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified	11.72%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.38%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	4.83%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	21.38%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.38%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.34%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	18.62%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	11.72%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	4.83%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.07%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	2.07%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.38%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.38%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.38%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.69%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.69%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.69%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	21.38%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	8.28%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.45%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.69%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	13.79%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	4.83%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	4.14%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.14%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.07%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	1.38%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.69%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	16.55%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	8.28%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.07%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.07%
Lake Chemocline	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline	0.69%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	2.07%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352004	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental	Open in IMG/M
3300000736	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002279	Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental	Open in IMG/M
3300003429	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN	Environmental	Open in IMG/M
3300003430	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD	Environmental	Open in IMG/M
3300003499	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN	Environmental	Open in IMG/M

Showing 1 to 10 of 107 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2199990798	2199352004	Freshwater	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
JGI12547J11936_10334782	3300000736	Freshwater And Sediment	MKLDEFKAQVEAQRKASLQEAIAKMSEANAKMASLFNLDEAE*
JGI12421J11937_100198153	3300000756	Freshwater And Sediment	MTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD*
JGI12421J11937_101401871	3300000756	Freshwater And Sediment	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLF
B570J29589_10307441	3300002279	Freshwater	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAX*
B570J40625_1000003804	3300002835	Freshwater	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
B570J40625_1000156301	3300002835	Freshwater	MTLDEYRAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
JGI25908J49247_100204716	3300003277	Freshwater Lake	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
JGI25922J50271_100491711	3300003413	Freshwater Lake	MTLEEYKAHVEAQRKASLLKAIATMSEANATMSSLFNTKEAE*
JGI25914J50564_100210038	3300003429	Freshwater Lake	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
JGI25914J50564_100519843	3300003429	Freshwater Lake	MNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAD*
JGI25921J50272_100014981	3300003430	Freshwater Lake	MTLEEYKAHVEAQRKESLQKAIATLSEANAKMSQLFGTKEAN*
JGI25930J51415_10081619	3300003499	Freshwater Lake	DEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0065166_103451891	3300004112	Freshwater Lake	MNLDEFKAQVEAQRKESLLKAIATMSEASATMGSLFNTKEAN*
Ga0007763_115895314	3300004796	Freshwater Lake	MNLNEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0070374_100955091	3300005517	Freshwater Lake	LDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAD*
Ga0070374_101621073	3300005517	Freshwater Lake	MNLEEYKAHVEAQRKASLAKAIATMSEANDKMGSLFNTKEAN*
Ga0070374_103171125	3300005517	Freshwater Lake	LDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAE*
Ga0049085_100333618	3300005583	Freshwater Lentic	MNLAEYKAHVEAQRKESLLKAIATMSEANDKMSSLFNTKEAN*
Ga0049085_101700971	3300005583	Freshwater Lentic	MNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTEEAN*
Ga0078894_110401473	3300005662	Freshwater Lake	MTLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAD*
Ga0078894_111430023	3300005662	Freshwater Lake	MNLEEYKAHVEAQRKASLAKAIATMSEANDKMGSLFNTKEDN*
Ga0070743_100398245	3300005941	Estuarine	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAN*
Ga0070743_100467043	3300005941	Estuarine	MTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE*
Ga0070744_100195135	3300006484	Estuarine	MTLDEYKALVEAQRKESLLKAIATMSEANAKMSSLFNTKEAE*
Ga0070744_100418215	3300006484	Estuarine	MNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAN*
Ga0070744_101108571	3300006484	Estuarine	MNLEEYKAHVEAQRKSSLAKAIATMSEANDKMGSLFNTKEAN*
Ga0070744_102012583	3300006484	Estuarine	MTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN*
Ga0102861_12217511	3300007544	Estuarine	KAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0102874_11451991	3300007546	Estuarine	KVDKMTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0102874_11465061	3300007546	Estuarine	KVDKMTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAN*
Ga0102874_12635974	3300007546	Estuarine	NLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
Ga0102875_12599561	3300007547	Estuarine	MTLEEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD*
Ga0102818_10635611	3300007552	Estuarine	MNLDEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE*
Ga0102915_10362161	3300007562	Estuarine	RRSEMNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
Ga0102923_11531981	3300007606	Estuarine	LDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0102872_12046784	3300007621	Estuarine	ERRSEMNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0102878_11229641	3300007624	Estuarine	SEMNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
Ga0102878_11731692	3300007624	Estuarine	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNT
Ga0102865_12646301	3300007639	Estuarine	MNLDEYKAYVEATRKESLLNAIATMSEANDKMSSLFNTKEAE*
Ga0102902_11723005	3300007644	Estuarine	YVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
Ga0102855_10373801	3300007647	Estuarine	KALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN*
Ga0102859_10068279	3300007708	Estuarine	MTLEEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN*
Ga0102859_11703051	3300007708	Estuarine	MNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTKEAE*
Ga0105737_12129693	3300007862	Estuary Water	KMTLEEYKAHVEAQRKASLLKAIATMSEANATMSSLFNTKEAN*
Ga0114340_11943951	3300008107	Freshwater, Plankton	EYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0114355_12390932	3300008120	Freshwater, Plankton	MKLHEYKEMIEAQRKASLAEAIAKMSEANAKMSSMFNLDEEE*
Ga0114336_11041794	3300008261	Freshwater, Plankton	MTLEEYKAHVEAQRKASLLKAIATMSEANATMSSLFNTKEAN*
Ga0102816_10275304	3300008999	Estuarine	MNLDEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN*
Ga0102829_13144141	3300009026	Estuarine	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
Ga0102864_10854541	3300009051	Estuarine	KAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
Ga0102854_10463391	3300009058	Estuarine	MTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTK
Ga0102885_10281735	3300009142	Estuarine	MTLDEYKAYVEATRKESLLKAIATMSEDNDKMSSLFNTKEAD*
Ga0114978_107570354	3300009159	Freshwater Lake	EMNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAE*
Ga0114966_1000813515	3300009161	Freshwater Lake	MNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTEEAK*
Ga0114975_1001237417	3300009164	Freshwater Lake	MNLEEYKAQVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN*
Ga0114969_104603283	3300009181	Freshwater Lake	MTLEEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE*
Ga0114969_105941451	3300009181	Freshwater Lake	TTKEGQFMNLDEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN*
Ga0114974_100623671	3300009183	Freshwater Lake	DEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
Ga0136551_100067412	3300010388	Pond Fresh Water	MNLDEYKAYVEAQRKASLQKAIATMSEANDKMSSLFGTKEAN*
Ga0136551_10078121	3300010388	Pond Fresh Water	MTLEEYKAQVEAQRKASLLKAIATMSEANATMSQLF
Ga0136551_10347941	3300010388	Pond Fresh Water	MNIEEYKAYVEAQRKASLLKAIATMSEANATMSQLF
Ga0133913_116196233	3300010885	Freshwater Lake	MNLAEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE*
Ga0138308_1439863	3300010965	Lake Chemocline	MTLEEYKAHVEAQRKASLLKAIATMSEANATMGSLFNTKEAN*
Ga0119951_100023614	3300012000	Freshwater	MNLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD*
Ga0157208_100019434	3300012667	Freshwater	MTLEEYKAQVEAQRKASLEKAIATMSVANATMSQLFNTKEAD*
Ga0157208_100036896	3300012667	Freshwater	MNLEEFQAHVEAQRKASMLKAIATMSQANDTMSSLFSTKEAD*
Ga0157208_100076394	3300012667	Freshwater	MNLEEYKSHVEAQRKASLAKAIATMSEANDKMGSLFNTKEAN*
Ga0157598_10550745	3300012712	Freshwater	TLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0157599_11136611	3300012715	Freshwater	VDKMTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0157616_12358831	3300012731	Freshwater	QRKVDKMTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
Ga0138290_10204521	3300012773	Freshwater Lake	TNERRSEMNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAN*
Ga0138284_13872871	3300012779	Freshwater Lake	RRSEMNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAE*
Ga0163199_10169097	3300013092	Freshwater	MNLDEYKAQVEAQRKASRLEAIATLTKANETISQLFNTKEAE*
Ga0181356_11198271	3300017761	Freshwater Lake	NLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAD
Ga0181356_11199711	3300017761	Freshwater Lake	NLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAE
Ga0181359_10681514	3300019784	Freshwater Lake	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0211732_137111917	3300020141	Freshwater	MTLEEYKAHVEAQRKASLLKAIATMSEANATIGSLFNTKEAN
Ga0211736_107427771	3300020151	Freshwater	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLF
Ga0211726_1040010911	3300020161	Freshwater	MTLEEYKAHVEAQRKESLLKAIATLSQANATMSQLFNTKEAD
Ga0211726_108583163	3300020161	Freshwater	MNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAE
Ga0211729_108811812	3300020172	Freshwater	MNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAN
Ga0207934_100128912	3300020561	Freshwater	MTLDEYKAYVEASRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0208718_100037211	3300020565	Freshwater	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0194048_100070531	3300021519	Anoxic Zone Freshwater	MNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTEEAK
Ga0194048_1001502711	3300021519	Anoxic Zone Freshwater	MNLAEYKAHVEAQRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0222714_100296226	3300021961	Estuarine Water	MNLEEYKAHVEAQRQASLQKAIATMSVANATMSQLFNTKEAN
Ga0222714_100668016	3300021961	Estuarine Water	MKLHEYKEMIEAQRKASLAEAIAKMSEANAKMSSMFNLDEEE
Ga0222712_1000474323	3300021963	Estuarine Water	MTLDEYKALVEAQRKASLLKAIATMSEANDKMGSLFNTKEAN
Ga0222712_101223381	3300021963	Estuarine Water	EYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAN
Ga0222712_104545681	3300021963	Estuarine Water	MNLEEYKAHVEAQRKASLQKAIATMSEANATMSALFGTEEAN
Ga0212124_101356945	3300022553	Freshwater	MNLDEYKAQVEAQRKASRLEAIATLTKANETISQLFNTKEAE
Ga0214917_104612383	3300022752	Freshwater	MTLEEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD
Ga0214921_1000637921	3300023174	Freshwater	MNLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD
Ga0214921_1005632510	3300023174	Freshwater	MTLDEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD
Ga0214921_104897462	3300023174	Freshwater	MNLEEYKAQVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE
Ga0244777_100904539	3300024343	Estuarine	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAN
Ga0244777_103867184	3300024343	Estuarine	MTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD
Ga0244775_1000187125	3300024346	Estuarine	MNLDEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN
Ga0244775_1000333027	3300024346	Estuarine	MTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE
Ga0244775_106186041	3300024346	Estuarine	MTLEEYKAHVEAQRKASLLKAIATMSEANATMSQLFGTEEAN
Ga0244775_109078503	3300024346	Estuarine	YKAHVEAQRKSSLAKAIATMSEANDKMGSLFNTKEAN
Ga0244776_102844264	3300024348	Estuarine	MTLEEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN
Ga0244776_105342224	3300024348	Estuarine	KAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN
Ga0244776_106325941	3300024348	Estuarine	MTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN
Ga0255223_10169737	3300024480	Freshwater	TLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
Ga0208783_103409472	3300025872	Aqueous	MNLEEYKAHIEAQRKASLQKAIATMSQANATMSALFGTEEAN
Ga0255065_10538611	3300027142	Freshwater	AYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0255115_10882982	3300027148	Freshwater	TTLPTKGQLMKLDEFKAQVEAQRKASLQEAIAKMSEANAKMASLFNLDEAE
Ga0255081_10209311	3300027155	Freshwater	MNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFN
Ga0208800_10366161	3300027193	Estuarine	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSL
Ga0208922_10640941	3300027197	Estuarine	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTREAD
Ga0208177_10870401	3300027254	Estuarine	DEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
Ga0208923_10080571	3300027320	Estuarine	MNLDEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTK
Ga0208311_11270164	3300027387	Estuarine	KVDKMTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
Ga0209552_10295121	3300027563	Freshwater Lake	MNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEA
Ga0255118_10307792	3300027593	Freshwater	MSVHSVILTTLPTKGQLMKLDEFKAQVEAQRKASLQEAIAKMSEANAKMASLFNLDEAE
Ga0255120_10468481	3300027594	Freshwater	MKLDEFKAQVEAQRKASLQEAIAKMSEANAKMASL
Ga0255117_10276405	3300027600	Freshwater	MKLDEFKAQVEAQRKASLQEAIAKMSEANAKMASLFNLDEAE
Ga0208942_10307531	3300027627	Freshwater Lentic	MNLAEYKAHVEAQRKESLLKAIATMSEANDKMSSLFNTKEAN
Ga0208133_10114091	3300027631	Estuarine	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTK
Ga0208133_10158116	3300027631	Estuarine	MTLDEYKALVEAQRKESLLKAIATMSEANAKMSSLFNTKEAE
Ga0209356_10277091	3300027644	Freshwater Lake	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTK
Ga0209551_11935492	3300027689	Freshwater Lake	MTLEEYKAHVEAQRKESLQKAIATLSEANAKMSQLFGTKEAN
Ga0209551_11991432	3300027689	Freshwater Lake	MNLEEYKAQVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN
Ga0209599_1000236416	3300027710	Deep Subsurface	MNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTKEAE
Ga0209297_11501391	3300027733	Freshwater Lake	NERRSEMNLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAN
Ga0209596_100586126	3300027754	Freshwater Lake	MTLEEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE
Ga0209444_102672321	3300027756	Freshwater Lake	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEA
Ga0209770_100143164	3300027769	Freshwater Lake	MTLEEYKAHVEAQRKASLLKAIATMSEANATMSSLFNTKEAE
Ga0209770_102460391	3300027769	Freshwater Lake	KVDKMTLDEYKAYVEATRKESLLKAIATMSEANDTMSSLFNTKEAD
Ga0209500_101621371	3300027782	Freshwater Lake	MNLDEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE
Ga0209550_102508482	3300027892	Freshwater Lake	MNLEEYKAHVEAQRKASLAKAIATMSEANDKMGSLFNTKEAN
Ga0247723_11463611	3300028025	Deep Subsurface Sediment	MTLDEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE
Ga0334977_0022969_3446_3553	3300033978	Freshwater	AYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
Ga0334977_0154314_19_147	3300033978	Freshwater	MTLDEYRAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
Ga0335019_0486554_3_125	3300034066	Freshwater	LEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE
Ga0335028_0048447_2765_2887	3300034071	Freshwater	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEA
Ga0335020_0175801_2_118	3300034082	Freshwater	MTLDEYRAYVEATRKESLLKAIATMSEANDKMSSLFNTK
Ga0335022_0263720_880_996	3300034095	Freshwater	EYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
Ga0335029_0003158_1150_1278	3300034102	Freshwater	MNLDEFKAQVEAQRKESLLKAIATMSEASATMGSLFNTKEAN
Ga0335053_0640784_488_604	3300034118	Freshwater	MTLDEYKAHVEAQRKASLLKAIETMSEANAKMSQLFNTK
Ga0335058_0085910_1712_1834	3300034121	Freshwater	LDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0335049_0134846_955_1083	3300034272	Freshwater	MTLDEYKAHVEAQRKASLLKAIETMSEANAKMSQLFNTKEAN
Ga0335052_0240202_1_114	3300034279	Freshwater	YKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050376

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences