Metagenome Family F049900

Overview

Basic Information

• Family ID: F049900
• Family Type: Metagenome
• Number of Sequences: 146
• Average Sequence Length: 36 residues
• Representative Sequence: VGLNPFRQARRSPADYVMVAVAVVVCVALVAWALFG
• Number of Associated Samples: 102
• Number of Associated Scaffolds: 146

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 39.16 %
• % of genes near scaffold ends (potentially truncated): 8.90 %
• % of genes from short scaffolds (< 2000 bps): 75.34 %
• Associated GOLD sequencing projects: 99
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (65.068 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.973 % of family members)
• Environment Ontology (ENVO): Unclassified (28.082 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (41.096 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 35.94%
  β-sheet: 0.00%
  Coil/Unstructured: 64.06%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 146 Family Scaffolds
PF02021	UPF0102	22.60
PF00378	ECH_1	21.23
PF13541	ChlI	15.07
PF00300	His_Phos_1	10.27
PF01245	Ribosomal_L19	3.42
PF01746	tRNA_m1G_MT	1.37
PF00318	Ribosomal_S2	1.37
PF01654	Cyt_bd_oxida_I	0.68
PF13083	KH_4	0.68
PF13683	rve_3	0.68

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 146 Family Scaffolds
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	22.60
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	3.42
COG0052	Ribosomal protein S2	Translation, ribosomal structure and biogenesis [J]	1.37
COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	Replication, recombination and repair [L]	1.37
COG0228	Ribosomal protein S16	Translation, ribosomal structure and biogenesis [J]	0.68
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.68
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.68
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.68
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.68

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.07 %
Unclassified	root	N/A	34.93 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.07 %
Unclassified	root	N/A	34.93 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.07 %
Unclassified	root	N/A	34.93 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.79 %
Unclassified	root	N/A	34.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	54.11 %
Unclassified	root	N/A	34.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.68 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	8.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.11 %
Unclassified	root	N/A	34.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	8.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Unclassified	root	N/A	34.93 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.68 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Ilumatobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae	1.37 %
Microthrixaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae	0.68 %
Unclassified	root	N/A	34.93 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.68 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %
Candidatus Microthrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix	0.68 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	1.37 %
Unclassified	root	N/A	34.93 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	0.68 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.68 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %
Candidatus Microthrix parvicella	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	0.68 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	1.37 %
Unclassified	root	N/A	34.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300027997|Ga0255057_10521563	Not Available	577
2070309009|GPKNP_GG3DY5402IDGRX	Not Available	502
3300000363|ICChiseqgaiiFebDRAFT_13193569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511
3300000956|JGI10216J12902_103871619	All Organisms → cellular organisms → Bacteria	961
3300000956|JGI10216J12902_108607105	Not Available	687
3300000956|JGI10216J12902_109594242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	981
3300000956|JGI10216J12902_110460119	Not Available	609
3300001213|JGIcombinedJ13530_109575282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546
3300001431|F14TB_100151031	Not Available	528
3300005937|Ga0081455_10006425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12598

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	1.37%
Environmental	Environmental	73.97%
Host-Associated	Host-Associated	24.66%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	17.81%
Bioreactor	Engineered → Bioreactor	0.68%
Mammals	Host-Associated → Mammals	2.05%
Plants	Host-Associated → Plants	22.60%
Terrestrial	Environmental → Terrestrial	56.16%
Wastewater	Engineered → Wastewater	0.68%

Category

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.68%
Anaerobic	Engineered → Bioreactor → Anaerobic	0.68%
Cave	Environmental → Terrestrial → Cave	0.68%
Digestive System	Host-Associated → Mammals → Digestive System	2.05%
Floodplain	Environmental → Terrestrial → Floodplain	0.68%
Freshwater	Environmental → Aquatic → Freshwater	9.59%
Marine	Environmental → Aquatic → Marine	4.11%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.68%
Peat	Environmental → Terrestrial → Peat	1.37%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.75%
Roots	Host-Associated → Plants → Roots	4.79%
Sediment	Environmental → Aquatic → Sediment	3.42%
Soil	Environmental → Terrestrial → Soil	53.42%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.68%
Gulf	Environmental → Aquatic → Marine → Gulf	0.68%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.68%
Ice	Environmental → Aquatic → Freshwater → Ice	4.79%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	2.05%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.05%
Loam	Environmental → Terrestrial → Soil → Loam	0.68%
Sand	Environmental → Terrestrial → Soil → Sand	1.37%
Sediment	Environmental → Aquatic → Marine → Sediment	2.05%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.37%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.37%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.68%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.68%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	0.68%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.37%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.37%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.68%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.05%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.05%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.68%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	2.05%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	2.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.11%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.68%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.37%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.68%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.75%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	2.05%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	2.05%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.37%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.37%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.37%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.37%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Marine → Gulf → Unclassified	0.68%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.68%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.68%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.68%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	0.68%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	5.48%

Habitat

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	2.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.05%
Anaerobic Biogas Reactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.37%
Elk Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces	0.68%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal	1.37%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.37%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	2.74%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.68%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.37%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.37%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.68%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.37%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.37%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.68%
Lake Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment	0.68%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.68%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	2.05%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.74%
Seawater	Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater	0.68%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	2.05%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.68%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	5.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.37%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.05%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.37%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.68%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.68%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKNP_01662660	2070309009	Soil	MGLNPFGQQRRSAADYVMVVAAVVACILLVAWALFG
ICChiseqgaiiFebDRAFT_131935692	3300000363	Soil	VGLNPFRQQRRSPADILMVVGALVVCVALVAWALFA*
JGI10216J12902_1038716192	3300000956	Soil	MGLNPFRQIHRSPADYVMVVVAVLVCVALVAWAVLG*
JGI10216J12902_1086071052	3300000956	Soil	LNPFRETHRSPADYLMVVVAVLICIALVAWALFG*
JGI10216J12902_1095942422	3300000956	Soil	MLVAVGLNPFRQAHRSPADYVMVAVAVLVCVALVAWALFG*
JGI10216J12902_1104601192	3300000956	Soil	VGLNPFRQARRSPADYLMVAVAVLVCIALVAWALFG*
JGIcombinedJ13530_1095752821	3300001213	Wetland	PDRARILDVVGFNPFRQQRRSFADYAMVGGALIVLVLLVLWAFFG*
F14TB_1001510311	3300001431	Soil	VGFNPFRKARRSSADYLMVATALVVCALLVIWALFG*
Ga0081455_100064256	3300005937	Tabebuia Heterophylla Rhizosphere	VGFNPFRQSRRSPADYVMVAAALVVCAALVIWALVG*
Ga0075365_101143073	3300006038	Populus Endosphere	MNPFRPHRRSPADYVMVVAALLVVAALIAWAFLG*
Ga0075365_105717542	3300006038	Populus Endosphere	MNPFRQHRRSPADYVMVAVAFAVIVALVLWAFFG*
Ga0075365_106703312	3300006038	Populus Endosphere	VGLNPFRQARRSPADYVMVAVAVVVCVALVAWALFG*
Ga0075368_102755432	3300006042	Populus Endosphere	MNPFRQHRRSPADYVMVAVAGVVILALVLWAFFG*
Ga0075417_103201142	3300006049	Populus Rhizosphere	VGLNPFRQQRRSPADIVMVAGAIVVVVLLVAWALFG*
Ga0075364_100489303	3300006051	Populus Endosphere	MNPFRQHRRSPADYVMVAAALLILAALVAWAFFG*
Ga0075026_1004413052	3300006057	Watersheds	MNPFRPHRRSPADFVMVGAALLVVIGLVVWAIHG*
Ga0075018_105036672	3300006172	Watersheds	MGMNPFRPPRRTPADYVMVAAALVVLAALVFWAVHG*
Ga0075367_107704662	3300006178	Populus Endosphere	MNPFRQHRRSPADYVMVAVAAVVILALVLWAFFG*
Ga0075428_1006754952	3300006844	Populus Rhizosphere	VGFNPFRQSRRSPADYVMVAAALVVCAALVIWALAG*
Ga0075428_1009696124	3300006844	Populus Rhizosphere	DTDGVGLNPFRQQRRSPADIVMVAGAIVVVVLLVAWALFG*
Ga0075421_1000005108	3300006845	Populus Rhizosphere	VGFNPFRQQRRSYADYVMVAAAIVICIVLVAWALFG*
Ga0075430_1005052052	3300006846	Populus Rhizosphere	VGLNPFRQQRRSPADIVMVAGAIVVVILLVAWALFG*
Ga0075431_1004849022	3300006847	Populus Rhizosphere	VGFNPFRQTRRSSADYVIVAAALVVCAALVIWALAG*
Ga0075433_115742902	3300006852	Populus Rhizosphere	MDVGLNPFRQHRRSPADILLVAAAVAVCVALVAWALFA*
Ga0079215_114902103	3300006894	Agricultural Soil	MNAVGFNPFRQQRRSSADYLMVAVAMVIIVALVAWGLFG*
Ga0079219_120875601	3300006954	Agricultural Soil	MGLNPYRPHRRSPADYALVAGAVLVCVLLVAWALFG*
Ga0079218_114109622	3300007004	Agricultural Soil	MGLNPFRQAHRSPADYVMVAVAILVCVALVAWAFFG*
Ga0105045_100365937	3300007517	Freshwater	MNPFRPHRRSPADVVMVVAAVLVCAALVAWALFG*
Ga0105044_100044136	3300007521	Freshwater	MNPFRQHRRSPADYVMVAAAFVVLAALVAWAFFG*
Ga0105044_103008342	3300007521	Freshwater	MGLNPYRKHHRSPVDYVMVAGAVLACLALVLWAFLG*
Ga0111539_100931933	3300009094	Populus Rhizosphere	VGLNPFRQHRRSPADILMVAVALVVCLALVLWALLG*
Ga0111539_119208142	3300009094	Populus Rhizosphere	MGFNPFRAQRRSTGDYVMVAVAVVVCVLLVAWAVLG*
Ga0079224_1001531164	3300009095	Agricultural Soil	MGRTILTGVGFNPFRPRRNSYADYLMVASALVVSAALVAWALFG*
Ga0079224_1012440242	3300009095	Agricultural Soil	MGLNPFRPHRRSYGDLAVMAGALIVTAALVAWALLG*
Ga0079224_1033527632	3300009095	Agricultural Soil	VGLNPFRQHRRSPADIAMVVGALLACAVLVAWALFG*
Ga0075418_100060604	3300009100	Populus Rhizosphere	VGFNPFRKTRRSSADYLMVAAALAVCALLVIWALFG*
Ga0075418_100177463	3300009100	Populus Rhizosphere	VGFNPFRQTRRSPADYVMVAVALVVCAALVIWALAG*
Ga0075418_125449692	3300009100	Populus Rhizosphere	VGLNPFRQQRRSPVDYVLVAVALAVCVLLVAWAAFGL*
Ga0117941_10825832	3300009120	Lake Sediment	MGLNPYRQRRRSPADYLMVAAAVVACLLLVLWAVLG*
Ga0105094_100504484	3300009153	Freshwater Sediment	VGLNPFRQQRRSPADIVMLVAALAVCVALVAWALFA*
Ga0111538_107151441	3300009156	Populus Rhizosphere	TDGVGLNPFRQQRRSPADIVMVAGAIVVVILLVAWALFG*
Ga0111538_112351911	3300009156	Populus Rhizosphere	VGLNPFRQHRRSPADVLLVAAALLVCLALVAWALFG*
Ga0075423_124940462	3300009162	Populus Rhizosphere	VGLNPFRQHRRSPADILMVVGALVVCVALVAWALFA*
Ga0105100_105780641	3300009166	Freshwater Sediment	MGLNPFGPRRRSAADYLMVAGAVIACAVLVLWAFLG*
Ga0114942_14782812	3300009527	Groundwater	MNPFRQHRRSPADYVMVAAALLILLALVAWAFFG*
Ga0123332_11229912	3300009770	Anaerobic Biogas Reactor	MGFNPHRPHRNSIADYLMVGAALAVVVLLVLWAVFG*
Ga0126307_1000047021	3300009789	Serpentine Soil	VGLNPFRQHRRSPADYLMVAVAVAVCLALVLWAALG*
Ga0126307_100294122	3300009789	Serpentine Soil	VGLNPFRQHRRSPADYLMVAGAVVVCLALVLWAFFG*
Ga0105061_10298842	3300009807	Groundwater Sand	VGFNPFRQTRRSPADYVMVAAALVACAALVIWALAG*
Ga0131092_101029814	3300009870	Activated Sludge	VGFNPFRQQRRSFADYAMVGGALIVLTLLVLWALFG*
Ga0126304_108971082	3300010037	Serpentine Soil	MGFNPHRPHRRSAADYVMVAAAFVVCIGLVLWAALG*
Ga0126382_118200112	3300010047	Tropical Forest Soil	VGLNPFRQHRRSPGDILMVVAALVVCVALVLWALLG*
Ga0126377_125105242	3300010362	Tropical Forest Soil	VGLNPFRQHRRSPADILLVAAAVAVCVALVAWALFG*
Ga0126377_129408952	3300010362	Tropical Forest Soil	VGLNPFRQHRRSPADILMLAAALVVCVLLVAWALFG*
Ga0126379_124533552	3300010366	Tropical Forest Soil	VGLNPFRQHRRSPADILLVAAAVAVCVALVAWALFA*
Ga0137374_107910722	3300012204	Vadose Zone Soil	VGFNPFHQQRRSNADYVMVAAALVVCIALVAWALFG*
Ga0137369_100979026	3300012355	Vadose Zone Soil	VGFNPFARHRRSAADYVMVAAALVLVVLLVAWALFG*
Ga0137369_103383042	3300012355	Vadose Zone Soil	MGFNPFRQHRRSYADYVLVGLAVVVCVALVLWALFG*
Ga0136630_10809971	3300012529	Polar Desert Sand	MGLNPFRLHRRTPADYLMVVGAVVVSLALVLWAFLG*
Ga0157216_100202493	3300012668	Glacier Forefield Soil	MGLNPFRQHRRSAADYLMVAGAVLACVLLVVWALFG*
Ga0136616_101840501	3300012679	Polar Desert Sand	VGLNPFRQHRRSPIDYVLVVAALLVCVLLVYWAAFGF*
Ga0136612_100986802	3300012680	Polar Desert Sand	VGLNPFRQQRRTSVDYVMVAVALTVCLLLVAWAFFG*
Ga0157302_101546252	3300012915	Soil	MLGQMGLNPFRQIHRSPFDYVMVALAVLVCVALVAWAFLG*
Ga0123351_11909602	3300012973	Fecal	VGLNPFRQHRRSPADIVMVAAALLACVALVAWALFG*
Ga0123351_12338772	3300012973	Fecal	MNPFRPHRRSPADYVMVAAAILVCLALVGWALFG*
Ga0075316_10479402	3300014314	Natural And Restored Wetlands	VGLNPFRQQRRRPSDYVLVAGAMLLTLLLVAWGIGLIP*
Ga0157380_120566202	3300014326	Switchgrass Rhizosphere	MNPFRQHRRSPADYVMVAAALLILVALVAWAFFG*
Ga0157380_132656152	3300014326	Switchgrass Rhizosphere	MNPFRQHRRSPADYVMVAAAFVVLVALVAWAFFG*
Ga0167665_100031516	3300015163	Glacier Forefield Soil	MGLNPFRQHRRSPADYLMVAGAVLACVLLVVWALFG*
Ga0167629_10384173	3300015209	Glacier Forefield Soil	VGLNPFRQQRRSPADYVLVAAAVVVTLLLVLWALLG*
Ga0167629_10893832	3300015209	Glacier Forefield Soil	VGLNPFRQQRRSPADYVLVAAAIVVTLLLVLWALLG*
Ga0132258_105232552	3300015371	Arabidopsis Rhizosphere	VGLNPFRQTHRSPADYLMVVVAVLACVALVAWAILG*
Ga0132257_1042134732	3300015373	Arabidopsis Rhizosphere	MRMGFNPFRHQRRSPADYVMVVAAFVIVALLVVWALFG*
Ga0180429_101312113	3300017960	Hypersaline Lake Sediment	MGFNPHRTHRRSPADYVMVAGAFVVVILLVAWALLG
Ga0184638_12859972	3300018052	Groundwater Sediment	MGFNPFHKRRPSYADYLLVGLAVAVCLALVLWALFG
Ga0184635_100824772	3300018072	Groundwater Sediment	VGFNPFRQTRRSPADYVMVAAALVACAALVIWALAG
Ga0190265_100127704	3300018422	Soil	MGLNPYRPHRRSPADIVMVVCALLACLALVLWALFG
Ga0190265_101762042	3300018422	Soil	VGLNPFRHARHSPADYVMVAVAVLVCVALVVWAFVG
Ga0190265_113880302	3300018422	Soil	MGLNPFRQQRRSSADYVMVAMAVLVCIALVVWAFAG
Ga0190265_118030012	3300018422	Soil	VGLNPFRQHRRSPADIAMVVGALLVCVALVAWAIFA
Ga0190265_133689121	3300018422	Soil	MGLNPFRQAHRSPADYVMVAVAILVCVALVAWALFG
Ga0190272_102798512	3300018429	Soil	VGLNPFRQQRRSPVDYVLVAIALVVCVLLVAWAAFGL
Ga0190275_100164566	3300018432	Soil	MGLNPFRQQRRSAADYLMVAGAIVVCILLVAWALFG
Ga0190275_109784422	3300018432	Soil	VGLNPFRQARRSPVDYLMVAGAVLVCVALVVWAFLG
Ga0190275_112503551	3300018432	Soil	MGLNPYRPHRTSAADVVMVVGALLACLALVLWALFG
Ga0190275_125646282	3300018432	Soil	MGLNPFRQQRRSVVDYLMVAGAVVVCILLVAWALLG
Ga0190269_100163683	3300018465	Soil	MGLNPFRQQRRSAADYLMVAGAVLACVLLVLWALLG
Ga0190269_102152134	3300018465	Soil	MGLNPFRQHRRSAADYLMVAGAVVACLLLVLWALFG
Ga0190268_106738492	3300018466	Soil	VGLNPFRQHRRSPADILMVAVALAVCVALVAWALLG
Ga0190270_100118344	3300018469	Soil	VGLNPFRQHRRSPADVLMVAVALLVCAALVAWALFA
Ga0190270_101154632	3300018469	Soil	VGFNPFRQTRRSPADYLMVGAALIVCAALVIWALAG
Ga0190270_106833562	3300018469	Soil	VTVGLNPFRQTHRSPADYLMVAVAVLVCVALVAWALFG
Ga0190270_108199343	3300018469	Soil	APMGMNPFRQHRRSPADYVMVAAALLILVALVAWAFFG
Ga0190270_109280692	3300018469	Soil	MGFNPFRAQRRSTGDYVMVAVAVVVCVLLVAWAVLG
Ga0190270_114507832	3300018469	Soil	VGLNPFRQAHRSPADYLMVAVAVLVCVALVAWAVFG
Ga0190274_114491102	3300018476	Soil	VGLNPFRQHRRSPADILMVAVALLVCVALVAWALFA
Ga0190274_121962522	3300018476	Soil	MGLNPFRQVHRSPLDYVMVALAVLVCLALVAWAFFG
Ga0190274_130674952	3300018476	Soil	MGLNPFREVHRSPLDYVMVALAVLVCLALVAWAFFG
Ga0190271_105143543	3300018481	Soil	MGLNPFGTRTHGWADYLMVAAAVVACLALVAWALLG
Ga0190271_106129893	3300018481	Soil	MGLNPFGTRTHGWADYLMVAGAVVACLALVAWALLG
Ga0190271_119896882	3300018481	Soil	MGLNPFRQVHRAPADYVIAALAVLVTVALVAWAFLG
Ga0190271_121078311	3300018481	Soil	MLGRMGLNPFRQAHRAPADYVIAAVAILVCLALVAWAFFG
Ga0190271_130510812	3300018481	Soil	AGRMGLNPFREVHRSPADYVIAALAILVIVALVAWAMFG
Ga0173482_103493062	3300019361	Soil	MLGRMGLNPFREIHRSPFDYVMVALAVLVCVALVAWAFLG
Ga0190264_120655382	3300019377	Soil	MGLNPFRQHRRSPADYLMVAGAVVVCLALVLWAFFG
Ga0187893_1000457414	3300019487	Microbial Mat On Rocks	VGLNPFRQHRRSPIDYLLVATTLVVVAALVAWALFG
Ga0208594_100011026	3300020509	Freshwater	MGFNPHRVHRRSAADYFMVAGAFIVVAALVVWALVG
Ga0224500_101725613	3300022213	Sediment	GLNPYRKQRRSPADYVMVAGAVMACAALVLWALLG
Ga0224500_103842172	3300022213	Sediment	MGLNPYRKQRRSPAYYVMVAGAVMACAALVLWALLG
Ga0224510_100873302	3300022309	Sediment	MGLNPYRKQRRSPADYVMVAGAVMACAALVLWALLG
Ga0210115_10925442	3300025791	Natural And Restored Wetlands	VGLNPFRQQRRRPSDYVLVAGAMLLTLLLVAWGIGLIP
Ga0256867_101216732	3300026535	Soil	VGLNPFRQHRRSSADILMVAGALVVCAALVAWALLG
Ga0209842_10291301	3300027379	Groundwater Sand	VGFNPFRQTRRPPADYVMVAAALVACAALVIWALAG
Ga0256866_10891681	3300027650	Soil	VARRGHDTEPVGFNPFRQTRRSPADYVMVAAALVVCAAL
Ga0209490_101044243	3300027823	Freshwater	MGLNPYRKHHRSPVDYVMVAGAVLACLALVLWAFLG
Ga0209797_100354492	3300027831	Wetland Sediment	VGLNPFRQHRRTAADYLMVAAALVVCGLLVLWAFLG
Ga0209813_103239171	3300027866	Populus Endosphere	AGYVADTEAMGMNPFRQHRRSPADYVMVAVAGVVILALVLWAFFG
Ga0209481_100182026	3300027880	Populus Rhizosphere	VGFNPFRQQRRSYADYVMVAAAIVICIVLVAWALFG
Ga0209254_106209672	3300027897	Freshwater Lake Sediment	MGLNPFHQHRRSAADYLMVAGAVVVCLVLVAWALLG
Ga0209253_105910053	3300027900	Freshwater Lake Sediment	GAVGFNPQRPKRRSSADYLMVGAAAIVVVGLVVWALFG
Ga0209382_100392752	3300027909	Populus Rhizosphere	VGFNPFRKARRSSADYLMVAAALAVCALLVIWALFG
(restricted) Ga0255057_105215631	3300027997	Seawater	RILGAVGFNPFRAQSRSLGDYVMVASALVVTALLVAWALLG
Ga0247718_11737902	3300028007	Soil	MGLNPFREQRRSAADYLLVAAAVAACVLLVLWALFG
Ga0233377_10095375	3300028483	Elk Feces	VGLNPFRQHRRSPADIVMVAAALLACVALVAWALFG
Ga0247823_106377132	3300028590	Soil	MGLNPFRQGRRGAADYLMVAGAVLVCILLVAWAFLG
Ga0302256_100601272	3300028741	Fen	MGLNPFRPQHHSALDYLMVAAALLASAALVAWAFLG
Ga0247825_103764881	3300028812	Soil	DTGAMGLNPFRQGRRGAADYLMVAGAVLVCILLVAWAFLG
Ga0247826_101874103	3300030336	Soil	MGFNPFRAQRRSTGDYVMVAVAVLVCVLLVAWAVLG
Ga0268240_100712131	3300030496	Soil	VGLNPFRQHCRSTADYVLVAAALAVCLALVLWAALG
Ga0299914_100911691	3300031228	Soil	TDHVGLNPFHQHRRSPADIAMVVGALVVCAALVTWALLG
Ga0299914_102017464	3300031228	Soil	MGLNPFRQQRRSPVDYLMVAGAVLACVLLVVWAMFG
Ga0299913_100114551	3300031229	Soil	VGNTAAVGFNPFRQRRSTADYLMVAVALAICVALVVWAAAG
Ga0299913_106567502	3300031229	Soil	MGLNPFRPNHRSYGDYVMVAGALVVCALLVVWALVG
Ga0299913_106985862	3300031229	Soil	MGLNPFRQQRRSAVDYVMVAGAVLACVLLVLWAMFG
Ga0307505_100412864	3300031455	Soil	MNPFRPHRSSPVADALFVGAALVVCAALVLWAFFG
Ga0307408_1015665952	3300031548	Rhizosphere	MGMNPFRQHRRSPADYVMVAAALLILVALVAWAFFG
Ga0307408_1018972512	3300031548	Rhizosphere	VGLNPFRQQRRSPVDYVLVAVALAVCVLLVAWAAFGL
Ga0302321_1029980201	3300031726	Fen	MGMNPFRQHRRSPADYVMVGAALVVLAGLVFWAIHG
Ga0316576_105509462	3300031727	Rhizosphere	GFNPHRKHRRSPADILFVVGALAVAVGLLAWALFG
Ga0307407_107857473	3300031903	Rhizosphere	VGLNPFRQQRRSPVDYVLVAVALVVCVLLVAWAAFGL
Ga0326597_102886271	3300031965	Soil	MGLNPFRQQRRSPADYVMVAAAVAACVLLVLWALFG
Ga0214472_116994332	3300033407	Soil	EPMGLNPFRQQRRSPADYLMVVGAVLACILLVLWALLG
Ga0316622_1006606212	3300033416	Soil	MGMNPFRQHRRSPADYLMVVAALVICALLVGWALFGG
Ga0214471_102135844	3300033417	Soil	MGLNPFRQQRHSAADYLMVAAAVLACIVLVLWAVLG
Ga0214471_111481122	3300033417	Soil	MGLNPFRQQRRSPVDYVMVAGAVLACVLLVLWAMFG
Ga0364927_0045197_417_527	3300034148	Sediment	VGFNPFARHRRSTADYVMVAAAFAVVVLLLAWALFG