NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F049137

Metagenome / Metatranscriptome Family F049137

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F049137
Family Type Metagenome / Metatranscriptome
Number of Sequences 147
Average Sequence Length 66 residues
Representative Sequence VRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDER
Number of Associated Samples 111
Number of Associated Scaffolds 147

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 75.51 %
% of genes near scaffold ends (potentially truncated) 31.97 %
% of genes from short scaffolds (< 2000 bps) 85.71 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (65.986 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere
(10.204 % of family members)
Environment Ontology (ENVO) Unclassified
(36.054 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(65.306 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94
1JGI10216J12902_1203879323
2C688J35102_1207722164
3C688J35102_1209860188
4Ga0055455_100361595
5Ga0055467_100688582
6Ga0062593_1007486372
7Ga0063455_1010572732
8Ga0062590_1013424881
9Ga0062595_1002010542
10Ga0062595_1003689201
11Ga0062595_1010859671
12Ga0062594_1030290451
13Ga0070658_115322801
14Ga0070683_1000590394
15Ga0070683_1007512061
16Ga0070683_1016344442
17Ga0070683_1016931282
18Ga0070690_1014099712
19Ga0068869_1013570261
20Ga0070666_103324411
21Ga0070680_1008146432
22Ga0068868_1008350841
23Ga0068868_1018181112
24Ga0070691_105629582
25Ga0070692_100230364
26Ga0070668_1012300351
27Ga0070674_1001135443
28Ga0070688_1003151121
29Ga0070659_1001280691
30Ga0070678_1004686983
31Ga0070679_1012762681
32Ga0070695_1002919504
33Ga0070696_1003532031
34Ga0070664_1001096541
35Ga0070664_1002552913
36Ga0070702_1008486742
37Ga0068866_114277191
38Ga0068861_1019447231
39Ga0068858_1021440861
40Ga0068860_1012559153
41Ga0075288_10020192
42Ga0075292_10184232
43Ga0075289_10481302
44Ga0075290_10123142
45Ga0066652_1000406913
46Ga0075432_101862522
47Ga0070712_1006692301
48Ga0079222_102299361
49Ga0079221_106773133
50Ga0079220_102006962
51Ga0075426_106163001
52Ga0075436_1009614192
53Ga0105245_101287355
54Ga0105245_104922192
55Ga0105245_112637081
56Ga0105245_115680952
57Ga0075423_100526607
58Ga0105242_100192075
59Ga0105248_124466222
60Ga0105238_101387475
61Ga0105249_102115872
62Ga0126321_10200143
63Ga0134125_101455175
64Ga0134128_103211274
65Ga0105239_103027803
66Ga0105239_124946781
67Ga0134127_105997302
68Ga0105246_101595451
69Ga0150985_1149274133
70Ga0134032_11051162
71Ga0150984_1061914872
72Ga0157317_10269152
73Ga0137373_104809772
74Ga0164300_110616701
75Ga0164298_101084842
76Ga0164301_102751732
77Ga0164308_106917181
78Ga0164308_108150961
79Ga0157371_101089063
80Ga0157371_112458252
81Ga0157378_125461062
82Ga0163162_101476893
83Ga0157380_119479733
84Ga0157380_130501252
85Ga0182008_103302522
86Ga0132258_1000052830
87Ga0132258_107913305
88Ga0132258_110921571
89Ga0132256_1000030572
90Ga0132256_1016651812
91Ga0132257_1001863015
92Ga0132257_1001866726
93Ga0132257_1031550611
94Ga0132255_1001185925
95Ga0132255_1007191252
96Ga0132255_1048055762
97Ga0163161_104818373
98Ga0163161_108341172
99Ga0206356_101080623
100Ga0206349_11646263
101Ga0206349_12633431
102Ga0206349_14303392
103Ga0206352_112039602
104Ga0206353_103503332
105Ga0224712_103038091
106Ga0210120_10261441
107Ga0207680_107628921
108Ga0207654_104212312
109Ga0207707_108960432
110Ga0207707_115201543
111Ga0207663_103418142
112Ga0207663_103638583
113Ga0207660_105889542
114Ga0207660_109882272
115Ga0207652_101950564
116Ga0207652_109423141
117Ga0207704_101049932
118Ga0207711_104978322
119Ga0207689_112375252
120Ga0207661_103465063
121Ga0207661_112709723
122Ga0207661_119060013
123Ga0207679_104606083
124Ga0207667_105063511
125Ga0208415_10154713
126Ga0207676_103482504
127Ga0207683_105785032
128Ga0207698_112011321
129Ga0247828_107534772
130Ga0307276_101255801
131Ga0307293_100807822
132Ga0307316_100757183
133Ga0307284_102821783
134Ga0307305_102969013
135Ga0307292_101932821
136Ga0307289_100301061
137Ga0308202_10145464
138Ga0102748_117086243
139Ga0308175_1002484953
140Ga0308175_1010942863
141Ga0308175_1012954371
142Ga0308175_1018928133
143Ga0308174_108477062
144Ga0308174_109889901
145Ga0308176_104212402
146Ga0308176_107498121
147Ga0308173_119446973
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.58%    β-sheet: 0.00%    Coil/Unstructured: 48.42%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035404550556065VRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
34.0%66.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Soil
Natural And Restored Wetlands
Soil
Vadose Zone Soil
Terrestrial Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Agricultural Soil
Soil
Soil
Soil
Rice Paddy Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
8.8%4.8%4.1%6.8%3.4%5.4%10.2%6.1%4.1%4.1%3.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_12038793233300000956SoilMRAGEALAMVARPAFSGTMRARRTKKERQSVTAKQWISYIAIAALTTWATQKLYDLVDEHLGA*
C688J35102_12077221643300002568SoilVRSSEEERRMTPGEAMAMVARPALSGSMRARQAHNEGIGVTKRQWLGYIAVAAYTTWLTQRLDELVEEHLGDGTR*
C688J35102_12098601883300002568SoilMRAGDAFAVVARPAVSGTMRARRTKKEQQTVNAKQWLGYIAVAVVTTWLTQKLYDVIDEHLGAGSGRDW*
Ga0055455_1003615953300003990Natural And Restored WetlandsMRAGETAAMIARPAFSGTMRARRTKKEQQSVSAKQWVAYIAVAALSTWATQKLYDVVDMRLGAPNGRRV*
Ga0055467_1006885823300003996Natural And Restored WetlandsMRAGEAAAMIARPAFSGTMRARRTRKEQRSVSARQWVAYIVVAALSTWATQKLYDVVDARFGTSNGPGV*
Ga0062593_10074863723300004114SoilMRAGEAFAVIARPAFSGTMRARRTKKEQQTVNAKQWLGYIAVAVATTWLTQKLYDVVDEHLGAGNGRDW*
Ga0063455_10105727323300004153SoilMTPGEAMAMVARPALSGSMRARQAHNEGIGVTKRQWLGYIAVAAYTTWLTQRLDELV
Ga0062590_10134248813300004157SoilVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0062595_10020105423300004479SoilMSPGEALAMVARPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLYDLVDERFGEPGC*
Ga0062595_10036892013300004479SoilVRPGDAVAMVARPALSGSLRARQAHKDGIGVTKQQWLGYIAVAAFTTWLTQRLDDLVEEHLGDRAA*
Ga0062595_10108596713300004479SoilMTPGEAMAMVARPAMSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDR
Ga0062594_10302904513300005093SoilVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0070658_1153228013300005327Corn RhizosphereMTPGEAMAMVARPALSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEH
Ga0070683_10005903943300005329Corn RhizosphereMTPGEAMAMVARPAMSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0070683_10075120613300005329Corn RhizosphereAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0070683_10163444423300005329Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRRA*
Ga0070683_10169312823300005329Corn RhizosphereMRPGDAVAMVARPALSGSLRARQAHKDGIGVTKQQWLGYIAVAAFTTWLTQRLDDLVEEHLGDRAA*
Ga0070690_10140997123300005330Switchgrass RhizosphereMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0068869_10135702613300005334Miscanthus RhizosphereMTPSEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRRV*
Ga0070666_1033244113300005335Switchgrass RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRLA*
Ga0070680_10081464323300005336Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDGQNL*
Ga0068868_10083508413300005338Miscanthus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNL*
Ga0068868_10181811123300005338Miscanthus RhizosphereMTPGEAMAMVARPAVSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRGV*
Ga0070691_1056295823300005341Corn, Switchgrass And Miscanthus RhizosphereMTPGEAMAMVARPAMSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRGV*
Ga0070692_1002303643300005345Corn, Switchgrass And Miscanthus RhizosphereMTPGEAMAMVARPALSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0070668_10123003513300005347Switchgrass RhizosphereMTPGEAMAMVARPAMSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRS
Ga0070674_10011354433300005356Miscanthus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARDGQNL*
Ga0070688_10031511213300005365Switchgrass RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNF*
Ga0070659_10012806913300005366Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDER
Ga0070678_10046869833300005456Miscanthus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNL*
Ga0070679_10127626813300005530Corn RhizosphereMTPSEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEH
Ga0070695_10029195043300005545Corn, Switchgrass And Miscanthus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVD
Ga0070696_10035320313300005546Corn, Switchgrass And Miscanthus RhizosphereEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0070664_10010965413300005564Corn RhizospherePGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRRA*
Ga0070664_10025529133300005564Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLRYIAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0070702_10084867423300005615Corn, Switchgrass And Miscanthus RhizospherePGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFDARTDRRA*
Ga0068866_1142771913300005718Miscanthus RhizosphereVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNF*
Ga0068861_10194472313300005719Switchgrass RhizosphereVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDERFGARD
Ga0068858_10214408613300005842Switchgrass RhizosphereTMTPGEAMAMVARPALSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0068860_10125591533300005843Switchgrass RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARDERNL*
Ga0075288_100201923300005874Rice Paddy SoilVRPGEALAIVARPAMSGTMRARRTEREQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARTDRLA*
Ga0075292_101842323300005887Rice Paddy SoilMRAGEAAAMIARPAFSGTMRARRTRKEQRSVSAKQWVAYIAVAALSTWATQKLYDVVDARFGTSNGPGV*
Ga0075289_104813023300005888Rice Paddy SoilVRAGEALGIVARPAISGTMRARRTKKEQHRVTTKQWLGYTAVAVLTTWLTQKLDDLVDARFGARDGQTL*
Ga0075290_101231423300005889Rice Paddy SoilMTPGEAMAMVARPAMSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDGSV*
Ga0066652_10004069133300006046SoilMRAGEALSMVARPAFSGTMRARRTKKERQSVTAKQWVSYIAIAALTTWATQKLYDLVEAHLGA*
Ga0075432_1018625223300006058Populus RhizosphereMTPGEAMAMVARPAVSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0070712_10066923013300006175Corn, Switchgrass And Miscanthus RhizosphereKVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVVTTWLTQKLDDLIDERFAARTDRLA*
Ga0079222_1022993613300006755Agricultural SoilAPAACSGGGRKVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRRA*
Ga0079221_1067731333300006804Agricultural SoilRPQKETAMRPGNVLAMIGRPAVSGAVRARQTKRDRGRVNAKQWLGYIAVAAATTWLTKALDDAVDRRFGAA*
Ga0079220_1020069623300006806Agricultural SoilLRAGDAVATVLRPAFSGTMRARQTKKEQRRVTTKQWVGYIVVAAATTWLTKTLDDLIDRRFGEPAPE*
Ga0075426_1061630013300006903Populus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDL
Ga0075436_10096141923300006914Populus RhizosphereTVCSGGGRKVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARTDRRA*
Ga0105245_1012873553300009098Miscanthus RhizosphereMTPSEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0105245_1049221923300009098Miscanthus RhizosphereVVTVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0105245_1126370813300009098Miscanthus RhizosphereRPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLYDLVDERFGEPGC*
Ga0105245_1156809523300009098Miscanthus RhizosphereMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNF*
Ga0075423_1005266073300009162Populus RhizosphereMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNF*
Ga0105242_1001920753300009176Miscanthus RhizosphereMVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0105248_1244662223300009177Switchgrass RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNF*
Ga0105238_1013874753300009551Corn RhizosphereREAAGRRSARAEAVTVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0105249_1021158723300009553Switchgrass RhizosphereVVTVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNL*
Ga0126321_102001433300010145SoilMRAGDALAVIARPAFSGTMRARRAKKEQHSVTAKQWMGYIAVAVVTTWLTQKLDDLVDERFGAQNGRIV*
Ga0134125_1014551753300010371Terrestrial SoilVVTVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQLLGYVAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0134128_1032112743300010373Terrestrial SoilVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDERNL*
Ga0105239_1030278033300010375Corn RhizosphereMTPGEAMAMVARPAMSGNMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0105239_1249467813300010375Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDER
Ga0134127_1059973023300010399Terrestrial SoilMTPGEAMAMVARPALSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRGV*
Ga0105246_1015954513300011119Miscanthus RhizosphereSGAPAACSGGGRKVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVALATTWLTQKLDDLVDERFGARTDRRA*
Ga0150985_11492741333300012212Avena Fatua RhizosphereMTPGEAMAMVARPALSGSMRARQAHNEGIGVTKRQWLGYIAVAAYTTWLTQRLDELVEEHLGDGTR*
Ga0134032_110511623300012376Grasslands SoilMVRPAFSGTMRARQTKKDGQRVTKKQWLGYIAVAAATTWLTKKQDDLIEQRFGESSTA*
Ga0150984_10619148723300012469Avena Fatua RhizosphereMTPGEAMAMVARPALSGSMRARQAHKEGIGVTKRQWLGYIAVAAYTTWLTQRLDELVEEHLGGGTR*
Ga0157317_102691523300012475Arabidopsis RhizosphereAMVARPAMSGTMRARRTKKERHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARTDRRA*
Ga0137373_1048097723300012532Vadose Zone SoilMRPGDAVSMIARPTLSGTMRARRAKKDGRGVTAKQWAGYIAVAAATTWLTRRLNDLVDE
Ga0164300_1106167013300012951SoilMTPGEAMAMVARPAVSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLRDASV*
Ga0164298_1010848423300012955SoilMVARPAMSGTMRARRTKKERHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARTDRRA*
Ga0164301_1027517323300012960SoilPAMSGTMRARRTKKEQRGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRLA*
Ga0164308_1069171813300012985SoilPPARAQGVVTVRAGDALGIVARPAMSGTMRARRTKKEQHTVTAKQWLGYVAVAIVTTWLTRKLDDLVDERFGARTDRLA*
Ga0164308_1081509613300012985SoilMTPGEAMAMVARPALSGSMRARQAHKEGIGVTKRQWLGYVAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0157371_1010890633300013102Corn RhizosphereVVTVRAGEALGIVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDGQNL*
Ga0157371_1124582523300013102Corn RhizosphereRPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKHDDLVDERFGARTDRRA*
Ga0157378_1254610623300013297Miscanthus RhizosphereMTPGEAMAMVARPAVSGSMRARQAHKEGIGVTKRQWLGYIDVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0163162_1014768933300013306Switchgrass RhizosphereVVTVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDERFGARTDRRA*
Ga0157380_1194797333300014326Switchgrass RhizosphereMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTHKLDDLVDERFGARDERNF*
Ga0157380_1305012523300014326Switchgrass RhizosphereMTPGEAMAMAARPAMSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0182008_1033025223300014497RhizosphereMSPGEALALVARPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLYDLVDERFGEPGC*
Ga0132258_10000528303300015371Arabidopsis RhizosphereMAMLARPALSGSLRARQAHKEGIGVTKRQWLGYVAVAAFTTWLTQRLDDLVEEHLASRTDEAGSA*
Ga0132258_1079133053300015371Arabidopsis RhizosphereMKPGEAMAMVARPALSGSMRARQAKKDGIGVTKRQWLGFIAVAAFTTWLTQRLDDLVEQRLGDDVR*
Ga0132258_1109215713300015371Arabidopsis RhizosphereMSGTMRARRTKKEQHSVTAKQWLGYIAVAIVTTWLTQKLDDLVDEHLGARNGRVF*
Ga0132256_10000305723300015372Arabidopsis RhizosphereMVARPAMSGTMRARRTKKERHGVTAKQWLGYIAVAVVTPWLTQKLDALVDERFGARTDRLA*
Ga0132256_10166518123300015372Arabidopsis RhizosphereMKPGEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYVAVAAFTTWLTQRLDDLVEEHLSDRSV*
Ga0132257_10018630153300015373Arabidopsis RhizosphereMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRL
Ga0132257_10018667263300015373Arabidopsis RhizosphereMAMLARPALSGSLRARQAHKEGIGVTKRQWLGYVAVAAFTTWLTQRLDDLVEE
Ga0132257_10315506113300015373Arabidopsis RhizosphereMKPGEAMAMVARPALSGSMRALQAKKHGIGVTKRQWLGFIAVAAFTTWLTQRLDDLVEQRLGDDVR*
Ga0132255_10011859253300015374Arabidopsis RhizosphereMVARPAMSGTMRARRTKKERHGVTAKQWLGYIAVAAATTWLTQKLDDLVDERFGARTDRLA*
Ga0132255_10071912523300015374Arabidopsis RhizosphereVVTVRTGDALGIVARPAMSGTMRARRTKKEQHSVTAKQWLGYIAVAIVTTWLTQKLDDLVDERFGARNGRVF*
Ga0132255_10480557623300015374Arabidopsis RhizosphereMKPGEAMAMVARPALSGSMRARQAKNDGIGVTKRQWLGFIAVAAFTTWLTQRLDDLVEQ
Ga0163161_1048183733300017792Switchgrass RhizosphereIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDERFGARDGQN
Ga0163161_1083411723300017792Switchgrass RhizosphereMTPGEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV
Ga0206356_1010806233300020070Corn, Switchgrass And Miscanthus RhizosphereVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDGRFGARDGQNL
Ga0206349_116462633300020075Corn, Switchgrass And Miscanthus RhizosphereMTPSEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEE
Ga0206349_126334313300020075Corn, Switchgrass And Miscanthus RhizosphereMSPGEALAMVARPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLYDLVDERFGEPGC
Ga0206349_143033923300020075Corn, Switchgrass And Miscanthus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDGQNL
Ga0206352_1120396023300020078Corn, Switchgrass And Miscanthus RhizosphereVRPGDAVAMVARPALSGSLRARQAHKDGIGVTKQQWLGYIAVAAFTTWLTQRLDDLVEEHLGDRAA
Ga0206353_1035033323300020082Corn, Switchgrass And Miscanthus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDERNL
Ga0224712_1030380913300022467Corn, Switchgrass And Miscanthus RhizosphereGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNF
Ga0210120_102614413300025556Natural And Restored WetlandsAAMIARPAFSGTMRARRTKKEQQSVSAKQWVAYIAVAALSTWATQKLYDVVDMRLGAPNGRRV
Ga0207680_1076289213300025903Switchgrass RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARTDRLA
Ga0207654_1042123123300025911Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRLA
Ga0207707_1089604323300025912Corn RhizosphereMTPSEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLV
Ga0207707_1152015433300025912Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRRA
Ga0207663_1034181423300025916Corn, Switchgrass And Miscanthus RhizosphereMRSREIFGAVARPALTGTMRARKTKKEQRTVTARQWIGYVAVAAATTWLTRKLENAVDRRYGTT
Ga0207663_1036385833300025916Corn, Switchgrass And Miscanthus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARDERNL
Ga0207660_1058895423300025917Corn RhizosphereMTPSEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV
Ga0207660_1098822723300025917Corn RhizosphereMTPGEAMAMVARPAVSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV
Ga0207652_1019505643300025921Corn RhizosphereVRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDERFGARDGQNL
Ga0207652_1094231413300025921Corn RhizosphereRSGVPAACSGGGRKVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRRA
Ga0207704_1010499323300025938Miscanthus RhizosphereVRAGEALGIVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDGQNL
Ga0207711_1049783223300025941Switchgrass RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNF
Ga0207689_1123752523300025942Miscanthus RhizosphereMTPSEAMAMVARPTLSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRRV
Ga0207661_1034650633300025944Corn RhizospherePTVCSGGGRKVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLVDERFGARDGQNL
Ga0207661_1127097233300025944Corn RhizosphereARPALSGSLRARQAHKDGIGVTKQQWLGYIAVAAFTTWLTQRLDDLVEEHLGDRAA
Ga0207661_1190600133300025944Corn RhizosphereMSPGEALAMVARPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLY
Ga0207679_1046060833300025945Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVATTWLTQKLDDLVDERFGARTDRRA
Ga0207667_1050635113300025949Corn RhizosphereGPTVCWGGGRKVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNF
Ga0208415_101547133300025993Rice Paddy SoilVRPGEALAIVARPAMSGTMRARRTEREQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARTDRLA
Ga0207676_1034825043300026095Switchgrass RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDER
Ga0207683_1057850323300026121Miscanthus RhizosphereVRPGEALAMVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARDERNL
Ga0207698_1120113213300026142Corn RhizosphereVRPGEALAMVARPAMSGTMRARRTKKERHRVTTKQWLGYIAVAVLTTWLTQKLDDLDIAEPL
Ga0247828_1075347723300028587SoilMTPGEAMAMVARPALSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV
Ga0307276_1012558013300028705SoilMKPGEAMAMVARPALSGSMRARQAHKDGIGVTKRQWLGYIAVAAYTTWLTQRLDDLVEQRLGEGAR
Ga0307293_1008078223300028711SoilVVARPAVSGTMRARRTKKEQQTVTAKQWIGYIAVAVVTTWLTQKLYDVVDERFGADNGWA
Ga0307316_1007571833300028755SoilMMRAGEAFAVVARPAVSGTMRARRTKKEQQTVTAKQWIGYIAVAVVTTWLTQKLYDVVDERFGADNGWAR
Ga0307284_1028217833300028799SoilMRAGEAFSLIARPAVSGTMRARRTKKEQRSVTARQWIAYIAVAALTTWATQKLYDQVDAHLGASNGRVSSN
Ga0307305_1029690133300028807SoilMMRAGEAFAVVARPAVSGTMRARRTKKEQQTVTAKQWIGYIAVAVVTTWLTQKLYDVVDERFGADNGRAW
Ga0307292_1019328213300028811SoilMRAGEAFSLIARPAVSGTMRARRTKKEQRSVTARQWIAYIAVAALTTWATQKLYDQVDAH
Ga0307289_1003010613300028875SoilMMRAGEAFAVVARPAVSGTMRARRTKKEQQTVTAKQWIGYIAVAVVTTWLTQKLYDVVDERFGA
Ga0308202_101454643300030902SoilMMRAGEAFAVVARPAVSGTMRARRTKKEQQTVTAKQWIGYIAVAVVTTWLTQKLCEVGDVRFGADTGWAR
Ga0102748_1170862433300031089SoilMTPGEAMAMVARPALSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLGDGTA
Ga0308175_10024849533300031938SoilMSPGEALALVARPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLYDVVDERFGEPGG
Ga0308175_10109428633300031938SoilVRPGEALAIVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARTDRRA
Ga0308175_10129543713300031938SoilEARAMRPGDAVAMVARPALSGSLRARQAHKDGIGVTKQQWLGYIAVAAFTTWLTQRLDDLVEEHLGDRAA
Ga0308175_10189281333300031938SoilMTPGEAMAMVARPAMSGSLRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV
Ga0308174_1084770623300031939SoilMSPGEALAMVARPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLYDLVDDRFGEQGG
Ga0308174_1098899013300031939SoilVRPGEALAIVARPAMSGTMRARRTKKEQHGVTAKQWLGYIAVAVVTTWLTQKLDDLVDERFGARTDRLA
Ga0308176_1042124023300031996SoilMSPGEALALVARPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLYDLVDERFGEPGC
Ga0308176_1074981213300031996SoilMTPGEAMAMVARPAMSGSMRARQAHKEGIGVTKRQWLGYIAVAAFTTWLTQRLDDLVEEHLSDRSV
Ga0308173_1194469733300032074SoilMSPGEALAMVARPAFSGTMRARKTKKERRSVSAKQWISYVAIAALTTWATQKLYDLVDDRFGGQGG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.