Metagenome Family F048411

Basic Information
Family ID	F048411
Family Type	Metagenome
Number of Sequences	148
Average Sequence Length	45 residues
Representative Sequence	MTMTINWNDGTYTFNHGNKIITKSTLQNKKACDNITNEINEMFKQLEQ
Number of Associated Samples	117
Number of Associated Scaffolds	148

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	2.03 %
% of genes near scaffold ends (potentially truncated)	28.38 %
% of genes from short scaffolds (< 2000 bps)	82.43 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Archaea (57.432 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (35.811 % of family members)
Environment Ontology (ENVO)	Unclassified (70.946 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.486 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. 1DelMOSum2010_1000017632 2DelMOSum2011_100080914 3DelMOWin2010_100653735 4DelMOWin2010_102080192 5LPaug09P1610mDRAFT_100001437 6LPaug08P2610mDRAFT_10102573 7OpTDRAFT_102838641 8BpDRAFT_100323643 9JGI24006J15134_100756276 10JGI24006J15134_101738393 11JGI24003J15210_100799582 12JGI24004J15324_100269935 13JGI24005J15628_100850304 14JGI24005J15628_101394953 15JGI24005J15628_101600073 16JGI26083J51738_100564151 17Ga0065861_10250302 18Ga0065861_11406271 19Ga0066222_10976522 20Ga0073579_10917431 21Ga0073579_119051784 22Ga0073579_119113523 23Ga0073579_13479811 24Ga0070722_101081673 25Ga0078893_113244182 26Ga0075466_10545113 27Ga0075446_101787013 28Ga0075447_102373032 29Ga0098038_10308003 30Ga0098048_100609921 31Ga0075467_100527488 32Ga0070748_13725402 33Ga0075444_101150903 34Ga0075469_101261341 35Ga0102853_10084452 36Ga0102855_10099071 37Ga0102855_11072571 38Ga0102855_11271621 39Ga0102852_10795833 40Ga0105739_11049501 41Ga0105741_10352363 42Ga0105741_10385165 43Ga0102854_11452581 44Ga0102854_11858912 45Ga0102815_105448362 46Ga0114995_1000937311 47Ga0114995_106756382 48Ga0114996_101189385 49Ga0114996_111481522 50Ga0115551_14453581 51Ga0114993_105797811 52Ga0114993_111775731 53Ga0114994_105245383 54Ga0114915_11235692 55Ga0114915_11720222 56Ga0114915_11894752 57Ga0115005_100801502 58Ga0115007_101213758 59Ga0115007_102917181 60Ga0115004_102634301 61Ga0115004_109358142 62Ga0115013_100432724 63Ga0115011_102847951 64Ga0115000_103222724 65Ga0115000_106408441 66Ga0115002_101286725 67Ga0114999_102085495 68Ga0114999_107748003 69Ga0115012_103063091 70Ga0115012_104773572 71Ga0118731_1037914181 72Ga0133547_120006573 73Ga0114934_100616845 74Ga0163179_1000155017 75Ga0181377_10228131 76Ga0181387_10755531 77Ga0181403_10268736 78Ga0181412_10761472 79Ga0181388_10161928 80Ga0181398_10374565 81Ga0181398_10974823 82Ga0181401_10135552 83Ga0181393_10656293 84Ga0181400_12289442 85Ga0181420_10878993 86Ga0181385_10486905 87Ga0181413_11191692 88Ga0181394_10039801 89Ga0181380_12834743 90Ga0206125_1005141010 91Ga0211511_10770862 92Ga0211682_103474802 93Ga0211652_100844124 94Ga0211686_103481462 95Ga0211576_1000586312 96Ga0211576_102729391 97Ga0211576_104979552 98Ga0213869_1003513011 99Ga0213861_1006898510 100Ga0212023_10341252 101Ga0224506_100037377 102Ga0233409_102774101 103Ga0233406_100146772 104Ga0233411_100271134 105Ga0244777_104780673 106Ga0244776_105058892 107Ga0207896_10089698 108Ga0207896_10245283 109Ga0208792_10231723 110Ga0209535_11828141 111Ga0209336_101485451 112Ga0209336_101549341 113Ga0209634_10637142 114Ga0209634_12386731 115Ga0208148_10522382 116Ga0208134_11442192 117Ga0209532_10754533 118Ga0208023_10174835 119Ga0209482_11887172 120Ga0209710_10398153 121Ga0209710_11044334 122Ga0209816_12087452 123Ga0209815_12145841 124Ga0209192_100976601 125Ga0209192_101069192 126Ga0209709_101573795 127Ga0209502_103231212 128Ga0209711_101598344 129Ga0209830_103735871 130Ga0209403_101539463 131Ga0209402_103984552 132Ga0209402_106757083 133Ga0209503_100436305 134Ga0209404_102028845 135Ga0233414_101694712 136Ga0308021_101741832 137Ga0307488_1001721213 138Ga0307489_106226052 139Ga0307996_100336213 140Ga0307993_11394572 141Ga0308014_11252091 142Ga0307985_101394991 143Ga0308004_103125181 144Ga0307984_11375481 145Ga0307994_11265411 146Ga0315322_100441172 147Ga0315315_102313972 148Ga0314858_048556_69_215
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. 1DelMOSum2010_1000017632 2OpTDRAFT_102838641 3JGI24004J15324_100269935 4Ga0098048_100609921 5Ga0075469_101261341 6Ga0102855_10099071 7Ga0102855_11072571 8Ga0114996_101189385 9Ga0209815_12145841
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 1Ga0073579_119113523 2DelMOWin2010_100653735 3DelMOWin2010_102080192 4JGI24005J15628_100850304 5Ga0075466_10545113 6Ga0114995_106756382 7Ga0115005_100801502 8Ga0115013_100432724 9Ga0115002_101286725 10Ga0181412_10761472 11Ga0211682_103474802 12Ga0224506_100037377 13Ga0233411_100271134 14Ga0307996_100336213 15Ga0307993_11394572 16Ga0307994_11265411 17Ga0315322_100441172
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.00% β-sheet: 23.68% Coil/Unstructured: 51.32%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Pfam ID	Name	% Frequency in 148 Family Scaffolds
PF01068	DNA_ligase_A_M	6.08
PF04404	ERF	2.70
PF14743	DNA_ligase_OB_2	1.35
PF00118	Cpn60_TCP1	0.68
PF00268	Ribonuc_red_sm	0.68
PF02867	Ribonuc_red_lgC	0.68

COG ID	Name	Functional Category	% Frequency in 148 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	6.08
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	6.08
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	0.68
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.68
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.68

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.30 %
Unclassified	root	N/A	27.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.78 %
Unclassified	root	N/A	27.70 %
Viruses	superkingdom	All Organisms → Viruses	13.51 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	57.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.51 %
Unclassified	root	N/A	27.70 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	56.08 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.35 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.35 %
Unclassified	root	N/A	27.70 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.35 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.51 %
Unclassified	root	N/A	27.70 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	56.08 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon TMED97	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	56.08 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.51 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	1.35 %
Unclassified	root	N/A	27.70 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	1.35 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1.35 %
Euryarchaeota archaeon TMED97	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	56.08 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.51 %
Unclassified	root	N/A	27.70 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	1.35 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1.35 %
Euryarchaeota archaeon TMED97	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	56.08 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.51 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1.35 %
Unclassified	root	N/A	27.70 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022938\|Ga0233409_10277410	Not Available	580	Open in IMG/M
(restricted) 3300023085\|Ga0233406_10014677	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	904	Open in IMG/M
(restricted) 3300023112\|Ga0233411_10027113	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	1729	Open in IMG/M
(restricted) 3300028045\|Ga0233414_10169471	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	971	Open in IMG/M
3300000101\|DelMOSum2010_c10000176	Not Available	57282	Open in IMG/M
3300000115\|DelMOSum2011_c10008091	Not Available	5807	Open in IMG/M
3300000117\|DelMOWin2010_c10065373	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	1498	Open in IMG/M
3300000117\|DelMOWin2010_c10208019	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	597	Open in IMG/M
3300000149\|LPaug09P1610mDRAFT_c1000014	Not Available	34641	Open in IMG/M
3300000159\|LPaug08P2610mDRAFT_c1010257	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	1164	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	14.19%
Inlet	Environmental → Aquatic → Marine → Inlet	2.70%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.46%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	4.73%
Oceanic	Environmental → Aquatic → Marine → Oceanic	42.57%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.35%
Sediment	Environmental → Aquatic → Marine → Sediment	0.68%
Strait	Environmental → Aquatic → Marine → Strait	9.46%
Unclassified	Environmental → Aquatic → Marine → Unclassified	14.19%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.68%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	7.43%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.35%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.35%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	41.22%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	14.19%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	12.84%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	9.46%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	4.73%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.03%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.35%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.73%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	2.03%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.68%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	7.43%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	2.03%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	1.35%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	35.81%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	8.78%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	5.41%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.70%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.70%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.03%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.35%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.68%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.68%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.68%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.68%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	0.68%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.68%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.35%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.68%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	9.46%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	2.70%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.35%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.35%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.68%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.68%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.68%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000149	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m	Environmental	Open in IMG/M
3300000159	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m	Environmental	Open in IMG/M
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental	Open in IMG/M
3300000930	Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_1000017632	3300000101	Marine	MTMTINWNDGTYTFNHGNKIITKSTLQNNKICDNITDEINEMFKQLEQ*
DelMOSum2011_100080914	3300000115	Marine	MTINWNDGTYTFNHGNKIITKSTLQNNKICDNITDEINEMFKQLEQ*
DelMOWin2010_100653735	3300000117	Marine	MKMTINWNDGTYMFHHNKITKSTLQNKKVCDNITNEITEMFNQLQQ*
DelMOWin2010_102080192	3300000117	Marine	MRIQIDWSDGTYTFKHGNEIVTKSTLQNKKVCDNITREINEMFKQLEI*
LPaug09P1610mDRAFT_100001437	3300000149	Marine	MRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI*
LPaug08P2610mDRAFT_10102573	3300000159	Marine	MRIDINWKNGTYTFKHGNKIVTKNTLQNKKACDNITNEINEMFKQLEI*
OpTDRAFT_102838641	3300000928	Freshwater And Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKACDNITNEITEMFKQLEQ*
BpDRAFT_100323643	3300000930	Freshwater And Marine	MTMTINWNDGTYTFNHGNKIITKSTLQNKKACDNITNEITEMFKQLEQ*
JGI24006J15134_100756276	3300001450	Marine	MKMTINWNDGTYVFNHNKITKSTLQNNTDCDNITNEITEMFNKLQQ*
JGI24006J15134_101738393	3300001450	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKVCDNITNEITEMFKQLEQ*
JGI24003J15210_100799582	3300001460	Marine	MRIQINWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI*
JGI24004J15324_100269935	3300001472	Marine	TFKHGNKIVTKSTLQNKKVCDNITREINEMFKQLEQ*
JGI24005J15628_100850304	3300001589	Marine	MRININWSNGTYSFKHGNRIVTKSTLQNKKACDNITNEITEMFKQLEQ*
JGI24005J15628_101394953	3300001589	Marine	MTMNINWHDGTYTFNHGNKIITKSTLQNKKVCDNITNEITEMFKQLEQ*
JGI24005J15628_101600073	3300001589	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKACDNITNEINEMFKQLER*
JGI26083J51738_100564151	3300003621	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKDCDNITNEINEMF
Ga0065861_10250302	3300004448	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKACDNITNEINEMFKQLEQ*
Ga0065861_11406271	3300004448	Marine	MTINWNDGTYTFNHGNKIITKSTLQNKKACDNITDEINEMFKQLEQ*
Ga0066222_10976522	3300004460	Marine	MTINWNDGTYTFNHGNKIITKSTLQNKKACDNITDEINKMFKQLEQ*
Ga0073579_10917431	3300005239	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKACDNITDEINEMFKQLEQ*
Ga0073579_119051784	3300005239	Marine	MKMTINWNDGTYVFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0073579_119113523	3300005239	Marine	MTMTINWNDGTYTFNHGNKIITKSTLQNKKACDNITNEINEMFKQLEQ*
Ga0073579_13479811	3300005239	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKACDNITNEITEMLNN*
Ga0070722_101081673	3300005601	Marine Sediment	MTINWNDGTYTFNHGNKIITKSTLQNKKACDNITNEITEMFKQLEQ*
Ga0078893_113244182	3300005837	Marine Surface Water	MKITINWNDGTYKFHHNKITKSTLQKNTDCDNITKEINEMFNQLQQ*
Ga0075466_10545113	3300006029	Aqueous	MRIQIDWSDGTYTFKHGNEIVTKSTLQNKKVCDNITNEITEMFNQLQQ*
Ga0075446_101787013	3300006190	Marine	MKMTINWNDGTYVFNHNKITKSTIQNDTDCDNITNEITEMFKQLEI*
Ga0075447_102373032	3300006191	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKVCDNITDEINEMFKQLEI*
Ga0098038_10308003	3300006735	Marine	MKITINWNDGTYKFHHNKITKSTLQNNTDCDNITKEITEMFNQLQQ*
Ga0098048_100609921	3300006752	Marine	MEIIINWNDGTYKFHHNKITKSTLQNNTNCDNITKEITEMFNQLQQ*
Ga0075467_100527488	3300006803	Aqueous	MKMTINWNDGTYVFHHNKITKSTLQNKKVCDNITNEITEMFNQLQQ*
Ga0070748_13725402	3300006920	Aqueous	MKMTINWNDGTYVFNHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0075444_101150903	3300006947	Marine	MRIDINWKNGTYTFKHGNRIVTKSTLQNKKVCDNITNEINEMFKQLENECI*
Ga0075469_101261341	3300007231	Aqueous	TYVFHHNKITKSTLQNKKVCDNITNEITEMFNQLQQ*
Ga0102853_10084452	3300007543	Estuarine	MRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITREINEMFKQLEI*
Ga0102855_10099071	3300007647	Estuarine	MRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNI
Ga0102855_11072571	3300007647	Estuarine	KTIKMRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITREINEMFKQLEI*
Ga0102855_11271621	3300007647	Estuarine	KTIKMRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI*
Ga0102852_10795833	3300007718	Estuarine	YTFKHGNKIVTKNTLQNKKACDNITNEITEMFKQLEQ*
Ga0105739_11049501	3300007954	Estuary Water	DWSDGTYKFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI*
Ga0105741_10352363	3300007956	Estuary Water	MTINWNDGTYKFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0105741_10385165	3300007956	Estuary Water	TINWNDGTYTFNHGNKIITKSTLQNKKACDNITNEITEMFKQLEQ*
Ga0102854_11452581	3300009058	Estuarine	IQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI*
Ga0102854_11858912	3300009058	Estuarine	MRIDINWKNGTYTFKHGNKIVTKNTLQNKKACDNITNEITEMFKQLEQ*
Ga0102815_105448362	3300009080	Estuarine	MTMTINWNDGTYTFNHGNKIITKSTLQNKKDCDNITNEINEMFNELQQ*
Ga0114995_1000937311	3300009172	Marine	MRIDINWSKGTYTFKHGNRIVTKSTLQNKKACDNITNEINEMFKQLQQ*
Ga0114995_106756382	3300009172	Marine	MTMTIKWSDGTYTFKHGNEIVTRSTLQNKKACDNITNEINEMFKQLEQ*
Ga0114996_101189385	3300009173	Marine	MIINWCDGTSTFEHKGKIVTKSTLQKKKECDNITNEINEMFKQFQQ*
Ga0114996_111481522	3300009173	Marine	MTINWNDGTYTFNHDNKIITKSTLQNKKACDNITNEINEMFNQLQQ*
Ga0115551_14453581	3300009193	Pelagic Marine	MKMTINWNDGTYKFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0114993_105797811	3300009409	Marine	MRIDINWSKGTYTFKHGNRIVTKSTLQNKKACDNITNE
Ga0114993_111775731	3300009409	Marine	KGTYTFKHGNRIVTKSTLQNKKACDNITNEINEMFKQLQQ*
Ga0114994_105245383	3300009420	Marine	MRIDINWSKGTYTFKHGNRIVTKSTLQNKKACDNITNEINEMFNQLQQ*
Ga0114915_11235692	3300009428	Deep Ocean	MRIDINWKNGTYTFKHGNRIVTKSTLQNEKACDNITKEINEIFKQLENECI*
Ga0114915_11720222	3300009428	Deep Ocean	MRIDINWKNGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQ*
Ga0114915_11894752	3300009428	Deep Ocean	MKMTINWNDGTYVFNHNKITKSTIQKDTDCDNITNEITEMFKQLEI*
Ga0115005_100801502	3300009432	Marine	MRIDINWSKGTYTFKHGNRIVTKNTLQNKKACDNITNEINEMFKQLEQ*
Ga0115007_101213758	3300009441	Marine	MRIDINWSKGTYTFKHGNRIVTKSTLQNKKACDNITNEINEMFNQLQ
Ga0115007_102917181	3300009441	Marine	SKGTYTFKHGNRIVTKSTLQNKKACDNITNEINEMFNQLQQ*
Ga0115004_102634301	3300009526	Marine	KMRIDINWKNGTYTFKHGNRIVTKNTLQNKKACDNITNEITEMFKQLEQ*
Ga0115004_109358142	3300009526	Marine	MTMTINWNDGTYTFNHGNKIITKSTLQNKKACDNITDEINKMFKQLEQ*
Ga0115013_100432724	3300009550	Marine	MKMTINWNDGTYKFHHNKITKSTLQNNTDCDNITREINEMFNELQQ*
Ga0115011_102847951	3300009593	Marine	INMKIIINWNDGTYKFHHNKITKSTLQNNADCDNITNEITEMFNQLQQ*
Ga0115000_103222724	3300009705	Marine	KNGTYTFKHGNRIVTKNTLQNKKACDNITNEITEMFKQLEQ*
Ga0115000_106408441	3300009705	Marine	MRIDINWSKGTYTFKHGNRIVTKNTLQNKKACDNITNEITEMFKQLEQ*
Ga0115002_101286725	3300009706	Marine	MKMIINWCDGTSTFEHKGKIVTKSTLQKKKECDNITNEINEMFKQFQQ*
Ga0114999_102085495	3300009786	Marine	MTINWNDGTYTFNHDNKIITKSTLQNKKACDNITDEINKMFKQLEQ*
Ga0114999_107748003	3300009786	Marine	NWNDGTYTFNHGNKIITKGTLQNKKVCDNITNEINEMFNQLQQ*
Ga0115012_103063091	3300009790	Marine	MTINWNDGTYKFHHNKITKSTLQNNTNCDNITKEINEMFNKLQQ*
Ga0115012_104773572	3300009790	Marine	MKIIINWNDGTYKFHHNKITKSTLQNNADCDNITNEITEMFNQLQQ*
Ga0118731_1037914181	3300010392	Marine	KMTINWNDGTYVFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0133547_120006573	3300010883	Marine	MTMTINWNDGTYTFNHGNKIITKSTLQNKKVCDNITNEINEMFNQLQQ*
Ga0114934_100616845	3300011013	Deep Subsurface	MKMTINWDDGTYKFHHNKITKSTLQKNTDCDNITNEITEMFNQLQQ*
Ga0163179_1000155017	3300012953	Seawater	MTINWNDGTYVFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0181377_10228131	3300017706	Marine	YVFNHNKITKSTLQNNTDCDNITNEITEMFNKLQQ
Ga0181387_10755531	3300017709	Seawater	IDWSDGTYTFKHGNKIVTKSTLQNNTDCDNITNEITEMFNQLQQ
Ga0181403_10268736	3300017710	Seawater	MKMTINWKDGTYKFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ
Ga0181412_10761472	3300017714	Seawater	MKMTINWNDGTYVFNHNKITKSTLQNNTDCDNITNEITEMFNQLQQ
Ga0181388_10161928	3300017724	Seawater	MKMTINWNDGTYVFNHNKITKSTLQKNTDCDNITNEITEMFNQLQQ
Ga0181398_10374565	3300017725	Seawater	NDGTYVFNHNKITKSTLQKNTDCDNITNEITEMFNQLQQ
Ga0181398_10974823	3300017725	Seawater	MKMTINWNDGTYVFNHNKITKSTLQNNTNCDNITNEITEMFNQLQQ
Ga0181401_10135552	3300017727	Seawater	MKMTINWNDGTYKFHHNKITKSTLQNNTDCDNITKEITEMFNQLQQ
Ga0181393_10656293	3300017748	Seawater	MRIKIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITREINEMFKQLEI
Ga0181400_12289442	3300017752	Seawater	MTINWNDGTYVFNHNKITKSTLQNNTNCDNITNEITEMFN
Ga0181420_10878993	3300017757	Seawater	MKITINWNDGTYKFHHNKITKSTLQKNTDCDNITNEITEMFNQLQQ
Ga0181385_10486905	3300017764	Seawater	MKMTINWNDGTYVFNHNKITKSTLQKNTDCDNITNEITEMFKQLEI
Ga0181413_11191692	3300017765	Seawater	MTINWNDGTYVFNHNKITKSTLQNNTDCDNITNEITEMFNQLQQ
Ga0181394_10039801	3300017776	Seawater	TYVFNHNKITKSTLQNNTDCDNITNEITEMFNQLQQ
Ga0181380_12834743	3300017782	Seawater	DGTYVFNHNKITKSTLQKNTDCDNITNEITEMFNQLQQ
Ga0206125_1005141010	3300020165	Seawater	MTINWNDGTYKFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ
Ga0211511_10770862	3300020349	Marine	MKITINWNDGTYKFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ
Ga0211682_103474802	3300020376	Marine	MRIDINWKNGTYTFKHGNRIVTKSTLQNEKACDNITKEINEIFKQLENECI
Ga0211652_100844124	3300020379	Marine	MKITINWNDGTYKFHHNKITKSTLQNNTDCDNITKEITEMFNQLQQ
Ga0211686_103481462	3300020382	Marine	MKMTINWNDGTYVFNHNKITKSTIQNDTDCDNITNEITEMFKQLEI
Ga0211576_1000586312	3300020438	Marine	MKMTINWNDGTYKFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ
Ga0211576_102729391	3300020438	Marine	MTINWNDGTYTFNHGNKIITKSTLQNKKACDNITNEITEMFKQLEQ
Ga0211576_104979552	3300020438	Marine	MRIDINWKNGTYTFKHGNKIVTKNTLQNKKACDNITNEITEMFKQLEQ
Ga0213869_1003513011	3300021375	Seawater	MKMTINWNDGTYVFHHNKITKSTLQNKKVCDNITNEITEMFNQLQQ
Ga0213861_1006898510	3300021378	Seawater	MKMTINWNDGTYVFHHNKITQSTLQNKKVCDNITNEITEMFNQLQQ
Ga0212023_10341252	3300022061	Aqueous	MKMTINWNDGTYMFHHNKITKSTLQNKKVCDNITNEITEMFNQLQQ
Ga0224506_100037377	3300022221	Sediment	MTITINWNDGTYTFNHGNKIITKSTLQNKKDCDNITNEINEMFNELQQ
(restricted) Ga0233409_102774101	3300022938	Seawater	MTITINWNDGTYTFNHGNKIITKSTLQNKKDCDNITNEINEMFNKLQQ
(restricted) Ga0233406_100146772	3300023085	Seawater	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKDCDNITNEINEMFKQLEQ
(restricted) Ga0233411_100271134	3300023112	Seawater	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKDCDNITNEINEMFNELQQ
Ga0244777_104780673	3300024343	Estuarine	MRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITREINEMFKQLEI
Ga0244776_105058892	3300024348	Estuarine	MRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI
Ga0207896_10089698	3300025071	Marine	MNINWHDGTYTFNHGNKIITKSTLQNKKVCDNITNEITEMFKQLEQ
Ga0207896_10245283	3300025071	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKVCDNITNEITEMFKQLEQ
Ga0208792_10231723	3300025085	Marine	MEIIINWNDGTYKFHHNKITKSTLQNNTNCDNITKEITEMFNQLQQ
Ga0209535_11828141	3300025120	Marine	DGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI
Ga0209336_101485451	3300025137	Marine	MRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNIT
Ga0209336_101549341	3300025137	Marine	IDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI
Ga0209634_10637142	3300025138	Marine	MRIQINWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI
Ga0209634_12386731	3300025138	Marine	QIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITREINEMFKQLEI
Ga0208148_10522382	3300025508	Aqueous	MRIQIDWSDGTYTFKHGNEIVTKSTLQNKKVCDNITNEITEMFNQLQQ
Ga0208134_11442192	3300025652	Aqueous	MTINWNDGTYVFHHNKITKSTLQNKKVCDNITNEITEMFNQLQQ
Ga0209532_10754533	3300025696	Pelagic Marine	MTINWNDGTYKFHHNKITKSTLQNNTYCDNITNEITEMFNQLQQ
Ga0208023_10174835	3300027206	Estuarine	IQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI
Ga0209482_11887172	3300027668	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKVCDNITDEINEMFKQLEI
Ga0209710_10398153	3300027687	Marine	MTINWNDGTYTFNHGNKIITKSTLQNNKICDNITDEINEMFKQLEQ
Ga0209710_11044334	3300027687	Marine	MRIDINWSKGTYTFKHGNRIVTKSTLQNKKACDNITNEINEMFKQLQQ
Ga0209816_12087452	3300027704	Marine	MRIDINWKNGTYTFKHGNRIVTKSTLQNKKVCDNITNEINEMFKQLENECI
Ga0209815_12145841	3300027714	Marine	TINWNDGTYVFNHNKITKSTIQNDTDCDNITNEITEMFKQLEI
Ga0209192_100976601	3300027752	Marine	MRIDINWSKGTYTFKHGNRIVTKSTLQNKKACDNITNEI
Ga0209192_101069192	3300027752	Marine	MTIKWSDGTYTFKHGNEIVTRSTLQNKKACDNITNEINEMFKQLQQ
Ga0209709_101573795	3300027779	Marine	MIINWCDGTSTFEHKGKIVTKSTLQKKKECDNITNEINEMFKQFQQ
Ga0209502_103231212	3300027780	Marine	MRIDINWSKGTYTFKHGNRIVTKNTLQNKKACDNITNEINEMFKQLEQ
Ga0209711_101598344	3300027788	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKACDNITNEITEMFKQLEQ
Ga0209830_103735871	3300027791	Marine	INWSKGTYTFKHGNRIVTKSTLQNKKACDNITNEINEMFKQLQQ
Ga0209403_101539463	3300027839	Marine	MIINWCDGTSNFEHKGKIVTKSTLQKKKECDNITNEINEMFKKFQQ
Ga0209402_103984552	3300027847	Marine	MTINWNDGTYTFNHDNKIITKSTLQNKKACDNITDEINKMFKQLEQ
Ga0209402_106757083	3300027847	Marine	MIINWCDGTSTFEHKGKIVTKSTLQKKKECDNITNEINEMFKKFQQ
Ga0209503_100436305	3300027859	Marine	MTINWNDGTYKFHHNKITKSTLQNNTDCDNITREINEMFNELQQ
Ga0209404_102028845	3300027906	Marine	IINWNDGTYKFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ
(restricted) Ga0233414_101694712	3300028045	Seawater	MTINWNDGTYTFNHGNKIITKSTLQNKKDCDNITNEINEMFNELQQ
Ga0308021_101741832	3300031141	Marine	MRIQINWNDGTYVFNHNKITKSTIQNDTDCDNITNEITEMFKQLEI
Ga0307488_1001721213	3300031519	Sackhole Brine	MRIDINWSKGTYTFKHGNRIVTKSTLQNKKACDNITNEINEMFNQLQQ
Ga0307489_106226052	3300031569	Sackhole Brine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKACDNITNEINEMFKQLQQ
Ga0307996_100336213	3300031589	Marine	MRIDINWKNGTYTFKHGNRIVTKSTLQNKKVCDNITNEINEMFKQLEI
Ga0307993_11394572	3300031602	Marine	MKMTINWNDGTYVFNHNKITKSTIQNDADCDNITNEITEMFKQLEI
Ga0308014_11252091	3300031628	Marine	MRIDINWKNGTYTFKHGNRIVTKNTLQNKKVCDNITDEIN
Ga0307985_101394991	3300031629	Marine	INWNDGTYVFNHNKITKSTIQNDTDCDNITNEITEMFKQLEI
Ga0308004_103125181	3300031630	Marine	MRIDINWSNGTYTFKHGNRIVTKSTLQNEKACDNI
Ga0307984_11375481	3300031658	Marine	YTFKHGNKIVTKSTLQNKKACDNITNEINEMFKQLENECI
Ga0307994_11265411	3300031660	Marine	MRIQINWNDGTYVFNHNKITKSTIQNDTDCDNITNEITE
Ga0315322_100441172	3300031766	Seawater	MKIIINWNDGTYKFHHNKITKSTLQNNTDCDNITKEITEMFNQLQQ
Ga0315315_102313972	3300032073	Seawater	MTINWNDGTYVFNHNKITKSTLQKNTDCDNITNEITEMFNQLQQ
Ga0314858_048556_69_215	3300033742	Sea-Ice Brine	MKMIINWCDGTSTFEHKGKIVTKSTLQKKKECDNITNEINEMFKQFQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters