NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F048399

Metagenome / Metatranscriptome Family F048399

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F048399
Family Type Metagenome / Metatranscriptome
Number of Sequences 148
Average Sequence Length 81 residues
Representative Sequence MNPGIQRRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSIVACGSVWVLIRFFLNTEQTETGERS
Number of Associated Samples 114
Number of Associated Scaffolds 148

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 80.27 %
% of genes near scaffold ends (potentially truncated) 31.08 %
% of genes from short scaffolds (< 2000 bps) 77.03 %
Associated GOLD sequencing projects 102
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (97.297 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(11.486 % of family members)
Environment Ontology (ENVO) Unclassified
(36.486 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(54.054 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110
1ICChiseqgaiiFebDRAFT_106158182
2F14TC_1028077162
3F14TC_1040872312
4AF_2010_repII_A1DRAFT_100393362
5JGI10214J12806_105607002
6JGI10214J12806_131738992
7Ga0055469_100642412
8Ga0055437_100626311
9Ga0062593_1006757732
10Ga0062589_1008631132
11Ga0062590_1006250792
12Ga0055457_102393532
13Ga0063356_1002646783
14Ga0063356_1004761504
15Ga0063356_1024677982
16Ga0063356_1025404562
17Ga0063356_1025918852
18Ga0063356_1041118121
19Ga0062592_1008304882
20Ga0062592_1021462611
21Ga0062591_1017373012
22Ga0062594_1026668441
23Ga0065715_100380602
24Ga0065705_102754122
25Ga0070670_1000375042
26Ga0066388_1002851463
27Ga0066388_1004838753
28Ga0068869_1007581292
29Ga0068869_1011795612
30Ga0068868_1010098462
31Ga0070689_1004045652
32Ga0070675_1000652772
33Ga0070674_1005130392
34Ga0070673_1018825632
35Ga0070701_108451062
36Ga0070662_1001862132
37Ga0070672_1000177797
38Ga0070672_1017695541
39Ga0070686_1008929281
40Ga0070665_1009559732
41Ga0068859_1017805671
42Ga0066905_1001544432
43Ga0066903_1030485522
44Ga0074479_110163112
45Ga0074470_105750942
46Ga0068863_1021162171
47Ga0068858_1000642935
48Ga0075300_10232613
49Ga0075422_102734301
50Ga0068871_1005306433
51Ga0066653_104829711
52Ga0075428_1009910452
53Ga0075428_1013423982
54Ga0075421_1022305522
55Ga0075430_1007651693
56Ga0075430_1015470121
57Ga0075420_1007425001
58Ga0075424_1013523622
59Ga0079218_100565832
60Ga0079218_131001072
61Ga0079218_139820441
62Ga0111539_1000109329
63Ga0111539_101238884
64Ga0111539_102202742
65Ga0075418_103827042
66Ga0075418_120416742
67Ga0075418_120674821
68Ga0111538_113969432
69Ga0105242_101257292
70Ga0105242_107626182
71Ga0105242_110846161
72Ga0105259_11285952
73Ga0105347_12549731
74Ga0126374_102662601
75Ga0105081_10528502
76Ga0126382_106220552
77Ga0126372_115939202
78Ga0126377_124274152
79Ga0126379_100103726
80Ga0134127_129379752
81Ga0134121_1000066910
82Ga0134121_131069621
83Ga0105246_123798711
84Ga0137422_10359472
85Ga0137326_10191001
86Ga0137314_11830261
87Ga0137429_11696401
88Ga0137432_10226581
89Ga0137452_10065754
90Ga0137427_103060742
91Ga0137319_10379452
92Ga0157284_101399712
93Ga0157291_100765512
94Ga0164301_116040281
95Ga0126369_102737334
96Ga0157375_118927051
97Ga0157375_120103191
98Ga0157375_129917161
99Ga0163163_125080642
100Ga0157380_101220681
101Ga0157380_113621701
102Ga0132258_102017773
103Ga0132258_102217022
104Ga0132258_124739572
105Ga0132258_139759492
106Ga0132257_1021268851
107Ga0132255_1023345482
108Ga0163161_101141954
109Ga0184628_102290593
110Ga0190272_119247322
111Ga0190270_103608992
112Ga0190274_100813312
113Ga0126371_112997642
114Ga0247746_10254562
115Ga0247800_10631551
116Ga0207680_100093294
117Ga0207662_100597534
118Ga0207662_103327792
119Ga0207650_100074757
120Ga0207659_100083543
121Ga0207659_103221762
122Ga0207701_106717092
123Ga0207701_107627372
124Ga0207670_109422131
125Ga0207669_101128403
126Ga0207691_100271856
127Ga0207679_100213921
128Ga0207679_110040361
129Ga0207651_116942091
130Ga0207641_1000164716
131Ga0207641_107025242
132Ga0209486_105485122
133Ga0207428_100194674
134Ga0209382_112499572
135Ga0268264_118529432
136Ga0310888_104566682
137Ga0310813_107745702
138Ga0310904_105735621
139Ga0310900_105285202
140Ga0310885_100255531
141Ga0310895_104643872
142Ga0315910_107543472
143Ga0315912_100111515
144Ga0315912_100290992
145Ga0307471_1027727682
146Ga0310896_109100271
147Ga0214471_115108612
148Ga0314801_211141_263_499
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 67.57%    β-sheet: 0.00%    Coil/Unstructured: 32.43%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

1020304050607080MNPGIQRRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSIVACGSVWVLIRFFLNTEQTETGERSCytopl.Extracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
97.3%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Natural And Restored Wetlands
Soil
Sediment (Intertidal)
Groundwater Sediment
Soil
Terrestrial Soil
Tropical Forest Soil
Switchgrass Rhizosphere
Soil
Soil
Agricultural Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Forest Soil
Hardwood Forest Soil
Soil
Soil
Rice Paddy Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Groundwater Sand
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
6.8%6.8%4.7%4.7%4.7%3.4%4.1%4.1%4.1%11.5%4.1%5.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiFebDRAFT_1061581823300000363SoilMSAKVRVRHRLNVVLQMVMALVTAILLGQLWLFTISLEAMDNRAVSPKVAGAAAVCSLIACGSIWILIRFFLRMEQSQSGDLR*
F14TC_10280771623300000559SoilMSPRVRIRHRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSMSVAIAAAVCSLMACGTVWVLIRFFLSTEHSETGE*
F14TC_10408723123300000559SoilMNPRTRVRDRMNVVLQMITALIGAVLMVQLWLFTVAIDSMENGSVSIAVAVATVICSFLAFAATWLMIRFFLRTEQNETGERS*
AF_2010_repII_A1DRAFT_1003933623300000597Forest SoilMSPKVRIRHRLNVVLQMVTALITAILLGQLWLFTITLDAMENGAMPSTVAGAAAACSIVACGTIWMLIRFFLRMEQSQPGDMQ*
JGI10214J12806_1056070023300000891SoilMRSNTQRQHRMNVVLQMVMALVTAILLGQLWLFTVTLDVMENPAVSIRVAIAATVCSLLACGSVWILIRFFLNAEQSETGG*
JGI10214J12806_1317389923300000891SoilVSPVTRLRDRMKVVLQMVMALVAVILLVQLWLFTVALEAMENGSTSIGVAIATTLCSFAACLAVWMLIRFFLRTELHETGERS*
Ga0055469_1006424123300003999Natural And Restored WetlandsMTPQFHRQRRMNVILQMVMTLIAAILLAQLWLFTIALDAMESAAVPATVAIAAAICSFLACGAVWLLIRFFVNTEQAETGERS*
Ga0055437_1006263113300004009Natural And Restored WetlandsMSPQPRIRARLNVILQMTTALITAVLLGQLWLFTVTLDAMENPATPLQVVIVTAICSVVACGAVWMLIRFFLKTECMETGGR*
Ga0062593_10067577323300004114SoilHGDNAERPSTGQSKGGAIGMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS*
Ga0062589_10086311323300004156SoilMSSQGQVRHRMNVVLQMVMTLIAAILLAQLWLFTVTLDAMENHAVSMNVAIAAVVCSLMACSAVWLLI
Ga0062590_10062507923300004157SoilMSAKVRVRHRLNVVLQMVMALVTAILLGQLWLFTISLEAMDNRAVSPKVAGAAAVCSLVACGSIWILIRFFLRMEQSQSGDLR*
Ga0055457_1023935323300004266Natural And Restored WetlandsMNSQVRVRHRMNVILQMVMALIAAILLAQLWLFTVTLDAMENDAVSMNVAVAAVVCSFAACGTIWILIKFFLQTEQTETGD*
Ga0063356_10026467833300004463Arabidopsis Thaliana RhizosphereMSLRVQRRHRMNVVLQMVMALITAILLGQLWLFTVTLDAMESSTVSTSVAIAATICSILACGSVWLLIRFFLNAEQAETGEQS*
Ga0063356_10047615043300004463Arabidopsis Thaliana RhizosphereMNLGSRVRDRMNVVLQMVMALVTAILLTQLWLFTIALDAMENHAVSMRVAVVAALCSLVACVAIWMLIRFFLRTEQHETGERP*
Ga0063356_10246779823300004463Arabidopsis Thaliana RhizosphereMVMALVAVILLVQLWLFTVALEAMENGSTSIGVAIATTLCSFAACLAVWMLIRFFLRTELHETGERS*
Ga0063356_10254045623300004463Arabidopsis Thaliana RhizosphereMNVVLQMVMALITAILLGQLWLFTVTLDAMESSTVSTSVAIAASVCSILACASVWLLIRFFLSAEQTETGDQS*
Ga0063356_10259188523300004463Arabidopsis Thaliana RhizosphereMSPRVQRRNRMNVVLQMVMALITAILLGQLWLFTVTLDAMESSSVSTSVAIAATIFSILACGAVWMLIRFFLNTERAETGE*
Ga0063356_10411181213300004463Arabidopsis Thaliana RhizosphereMSAKVRVRHRLNVVLQMVMALVTAILLGQLWLFTISLEAMDNRAVSPKVAGAAAVCSLVACGSIWILIRFF
Ga0062592_10083048823300004480SoilMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS*
Ga0062592_10214626113300004480SoilMNPVAQTRKRMNVVLQMVTALITAILLGQLWLFTVTLDVMEIPSVSISVAVAAAVCSLFACGSIWVLIRF
Ga0062591_10173730123300004643SoilMSPRTRVRDRMNVVLQMITALIAAVLLLQLWLFTVAIDDMENGSVSIRVAVATVLCSFVAFAASWMLIRFFLRTEQNETGERN*
Ga0062594_10266684413300005093SoilMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSMSVAIAAAICSLMACGTVWVLIRFFLSTEHSETGE*
Ga0065715_1003806023300005293Miscanthus RhizosphereMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS*
Ga0065705_1027541223300005294Switchgrass RhizosphereMSPRVRIRHGLNVVLQMVTVLITAILLGQLWLFTISLEAMENGAMPSTVAFAAVACSLLACGSIWVLIRLFLRMEQTQTGDIR*
Ga0070670_10003750423300005331Switchgrass RhizosphereMNPGMQRRRRMNVVLQMVTTLITAILLGQLWLFTVTLEAMENPAASMSVATAAAICSVVACGSVWVLIRFFLNTEQTETGERS*
Ga0066388_10028514633300005332Tropical Forest SoilMSPNVHRQQRMNVLLQMVTAFITAILLGQLWLFTVALDAMESTTASTTVSLVTAICSLLACGTVWVLIRFFLNTEQAEAGERS*
Ga0066388_10048387533300005332Tropical Forest SoilMSPRVRVRHRLNVVLQMVTALITAILLGQLWLFTITLEAMENGAVPSRVAGTAAACSFLACGSVWMLIRFFLRMERSQTGEMR*
Ga0068869_10075812923300005334Miscanthus RhizosphereMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIQFFLNTEQTETGERS*
Ga0068869_10117956123300005334Miscanthus RhizosphereMSPITRVRDRMEVVLQMVMALIAGILLVQLWLFTVALDTMENGSASIGIAIATIFCSFAACLAVWMLIRFFLRTEQHETGERP*
Ga0068868_10100984623300005338Miscanthus RhizospherePALGNNEELAGTGSSSGGAIRMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIQFFLNTEQTETGERS*
Ga0070689_10040456523300005340Switchgrass RhizosphereMSPTTRVRDRMKVLLQMVMAFIAVILLVQLWLFTVALDAMENGSASVGVAVATIFCSFAACLAVWMLIRFFLRTEQHETGERL*
Ga0070675_10006527723300005354Miscanthus RhizosphereMSSTTRVRDRMKVLLQMVMAFIAVILLVQLWLFTVALDAMENGSASVGVAVATIFCSFAACLAVWMLIRFFLRTEQHETGERL*
Ga0070674_10051303923300005356Miscanthus RhizosphereMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLMACGTVWVLIRFFLSTEHSETGE*
Ga0070673_10188256323300005364Switchgrass RhizosphereMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSIVAFGSVWVLI
Ga0070701_1084510623300005438Corn, Switchgrass And Miscanthus RhizosphereMSPQVRVRHRMNVVLQMVMTLISAILLAQLWLFTVTLDAMENHAISMNVAIAAVVCSLLGCAAIWMLIRFFLRTEQMETGDRF*
Ga0070662_10018621323300005457Corn RhizosphereHGDNAERPGTGQSKGGAIGMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS*
Ga0070672_10001777973300005543Miscanthus RhizosphereMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIRFF
Ga0070672_10176955413300005543Miscanthus RhizosphereMNPGIPQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSILACGSVWVLIRFF
Ga0070686_10089292813300005544Switchgrass RhizosphereSPTTRVRDRMKVLLQMVMAFIAVILLVQLWLFTVALDAMENGSASVGVAVATIFCSFAACLAVWMLIRFFLRTEQHETGERL*
Ga0070665_10095597323300005548Switchgrass RhizosphereMNPGIPQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSILACGSVWVLIRFFLSTEQAETGERS*
Ga0068859_10178056713300005617Switchgrass RhizosphereMNPGIPQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSILACGSVWVLIRFFLSTEQAET
Ga0066905_10015444323300005713Tropical Forest SoilMSPGIRVRQRLNAVLAMVTALITAILLGQLWLFTVTLEAMENGAVPSRVAGAAALFSLLACGAIWMLIRFFLRMEQSQSGDLR*
Ga0066903_10304855223300005764Tropical Forest SoilMNPGIQRRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPASSISVAIAAAVCSVLACGSVWVLIRFFLNTEQMETGERS*
Ga0074479_1101631123300005829Sediment (Intertidal)MNPGIRVRNRLNVLLQMITALITAILLGQLWLFTVTLEAMENGAVSGTVAVAATVCSLVACSSIWMLIRFFLRTEQSETGERL*
Ga0074470_1057509423300005836Sediment (Intertidal)MSPQPRIRARLNVILQMTTALITAVLLGQLWLFTVTLDAMENPATPLQVVIVTAICSVVACGAVWMLIRFFLKTERMKTGGR*
Ga0068863_10211621713300005841Switchgrass RhizosphereMNPSFQRRRGMNVVLQMVTALITAILLGQLWLFTVTLDAMENPASSMSIAIAAAVCSILACGSVWVLIRFFLNTEQMETGERS*
Ga0068858_10006429353300005842Switchgrass RhizosphereMNPGIQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIQFFLNTEQTETGERS*
Ga0075300_102326133300005876Rice Paddy SoilMNAAIHRRRRMNVLLQMVTALITAILLVQLWLFAVTLDVMENSAASMSVAIIAVTFSLLACGAVWILIRFFL
Ga0075422_1027343013300006196Populus RhizosphereMNVGTRVRERMNVVLQMVMALITAILLGQLWLFTIALDAMENHAVSMDVAAVASVCSLVACITIWMLIRFFLRTEQYETGDRS*
Ga0068871_10053064333300006358Miscanthus RhizosphereMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLI
Ga0066653_1048297113300006791SoilMSPQIRVQHRMNVILQMVMTLIAAILLAQLWLFTVTLDAMENHAVSTNVAIAAAACSFVACASIWMLIRFFLRTEQTQTGDRF*
Ga0075428_10099104523300006844Populus RhizosphereMSPRIRVRHRLNIVLQMVTTLITAILLGQLWLFTIMLDAMENSSASPTLVAGAAVCSLVGCGAIWMLIRFFLRREQWETEV*
Ga0075428_10134239823300006844Populus RhizosphereMRLITRVRDRMEVVLQMVMALIAGILLVQLWLFTVALDAMENGSASIGIAIATIFCSFAACLAVWMLIRFFLRTEQHETGERP*
Ga0075421_10223055223300006845Populus RhizosphereHRMNVLLQMVTALIAAILLGQLWLFTITLEAMESHSVSMRVGIAAAVCSLLACGAVWGLIRFFLRAEAEERL*
Ga0075430_10076516933300006846Populus RhizosphereMSPRIRVRHRLNIVLQMVTTLITAILLGQLWLFTIMLDAMENSSASPTLVAGAAVCSLV
Ga0075430_10154701213300006846Populus RhizosphereMSPGIQRRNRMNVVLQMVTALITAVLLGQLWLFTVTLDAMENPSASMSVATAATICSLVACAAVWVLIRFFLTAEQTETGERS*
Ga0075420_10074250013300006853Populus RhizosphereDQVSPRVRLRHRMNVLLQMVTALIAAILLGQLWLFTITLEAMESHSVSMRVGIAAAVCSLLACGAVWGLIRFFLRAEAEERL*
Ga0075424_10135236223300006904Populus RhizosphereMSPKVRVRHRLNVVLQMVMALITAILLGQLWLFTITLEAMDNGAVSPKVAGVAAVCSLIACSSIWILIRFFLRMEQSQSGDLR*
Ga0079218_1005658323300007004Agricultural SoilMSPGTQRRNRMNVVLQMVTTLITAILLGQLWLFTVTLEVMETPAASIGIAIAAAVCSLVACGAVWVLIRFFLTAEQIETGDRS*
Ga0079218_1310010723300007004Agricultural SoilMSPQSRVQHRMNVVLQMVMALIAAILLAQLWLFTVTLDAMENHAVSMNVAIAAAVCSLVACATVWMLIRF
Ga0079218_1398204413300007004Agricultural SoilMSPEVHKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMENPSASMTIAVAAALCSLVACSAVWVLIRFFL
Ga0111539_10001093293300009094Populus RhizosphereMNVGTRVRERMNVVLQMVMALITAILLGQLWLFTIALDAMENHAVSMDVAAVAAVCSLVACITIWMLIRFFLRTEQYETGDRS*
Ga0111539_1012388843300009094Populus RhizosphereMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSMSVAIAAAVCSLMACGTVWVLIRFFLSTEHSETGE*
Ga0111539_1022027423300009094Populus RhizosphereMNVVLQMVTALITAILLAQLWLFSVTLDAMENPSIAVSVAIAAAVCSLIACGCVWVLIRFFLSTEQTEAGETLER*
Ga0075418_1038270423300009100Populus RhizosphereMNVLLQMVTALIAAILLGQLWLFTITLEAMESHSVSMRVGIAAAVCSLLACGAVWGLIRFFLRAEAEERL*
Ga0075418_1204167423300009100Populus RhizosphereMSPGIHKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLLACGTVWVLI
Ga0075418_1206748213300009100Populus RhizosphereKRAGLGSSNRGGPSMSAKVRVRHRLNVVLQMVMALVTAILLGQLWLFTVSLEAMDNRAVSPKVAGAAAVCSLVACGSIWILIRFFLRMEQSQSGDLR*
Ga0111538_1139694323300009156Populus RhizosphereMTPRIRIRHRLNVVLQLVTALTIAVLLGQLWLLTITLDAMENGAVPSGVAAAAAACSLLGCFGIWMLIRFFLRVEQSQSGDVR*
Ga0105242_1012572923300009176Miscanthus RhizosphereMSPQIRVRHRMNVILQMVMTLIAAILLAQLWLFTVTLDAMENHAVSMNVAIAAAACSLVACASIWMLIRFFLRTEQTQTGDRL*
Ga0105242_1076261823300009176Miscanthus RhizosphereMNVVLQMITALIAAVLLLQLWLFTVAIDDMENGSVSIRVATATVLCSFVAFAASWMLIRFFLRTEQNETGDRN*
Ga0105242_1108461613300009176Miscanthus RhizosphereQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIQFFLNTEQTETGERS*
Ga0105259_112859523300009597SoilMSPKVPIRNRLNVVLQMVTVLITAILLGQLWLFTITLDAMENTAVSTTVALAATTCSMVACGAVWTLIRFFLRTERSEAGERA*
Ga0105347_125497313300009609SoilMTSDVRIRNRLNVVLQMVTVLITAILLGQLWLFTITLDAMENTAVSITVALAATTCSMVACAAVWMLIRFFLRTERSEAGEHA*
Ga0126374_1026626013300009792Tropical Forest SoilMSPKVQIRHRLNVVLQMVTALITAILLGQLWLFTITLDAMENGAMPSTVAGAAAACSIVACGTIWMLIRFFLRMEQSQPGDMQ*
Ga0105081_105285023300009806Groundwater SandMNVLLQMVTALIAAILLAQLWLFTVTLDAMESHSVSMRVGIAAVICSLVACGAVWGLIRFFLRAEAEERL*
Ga0126382_1062205523300010047Tropical Forest SoilMSPKVRVRHRLNVVLQMVMALITAILLGQLWLFTITLETMDNAAVSPKVAGVAAVCSLVACGSIWILIRFFLRMEQSQSGDLR*
Ga0126372_1159392023300010360Tropical Forest SoilGSAHGKGARMSPRIRVRQRLNAVLAMVTAFIAAILLGQLWLFTITLDAMENGAMPSTVAGAAAACSIVACGTIWMLIRFFLRMEQSQPGDMQ*
Ga0126377_1242741523300010362Tropical Forest SoilMSPKVRVRHRLNVVLQMVIALITSILLGQLWLFTITLETMDNAAVSPKVAGVAAVCSLVACGSIWILIRFFLRIEQSQSGELR*
Ga0126379_1001037263300010366Tropical Forest SoilMSLKVRIRHRLNVVLQMVTALITAILLGQLWLFTITLDAMENGAMPSTVAGAAAACSIVACGTIWMLIRFFLRMEQSQPGDMQ*
Ga0134127_1293797523300010399Terrestrial SoilMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLMACGTVWVLIR
Ga0134121_10000669103300010401Terrestrial SoilMNVVLQMVMAIIAAILLAQLWLFTVTLDAMENHAVSMNVAVAAVVCSLVACAAIWTLIRFFLRTEQTETGERL*
Ga0134121_1310696213300010401Terrestrial SoilELAGTGSSSGGAIRMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIQFFLNTEQTETGERS*
Ga0105246_1237987113300011119Miscanthus RhizosphereNSERTSTGQSKGGAIGMNPGMQRRRRMNVVLQMVTTLITAILLGQLWLFTVTLEAMENPAASMSVATAAAICSVVACGSVWVLIRFFLNTEQTETGERS*
Ga0137422_103594723300011416SoilMSPKVPIRNRLNVVLQMVTVLITAILLGQLWLFTITLDAMENTAVSITVALAATTCSMVACAAVWMLIRFFLRTERSEAGEHA*
Ga0137326_101910013300011417SoilQAHGGKRMSPKVPIRNRLNVVLQMVTVLITAILLGQLWLFTITLDAMENTAVSTTVALAATTCSMVACGAVWTLIRFFLRTERSEAGERA*
Ga0137314_118302613300011420SoilPIRNRLNVVLQMVTVLITAILLGQLWLFTITLNAMENTAVSTTVALAATTCSMVACGAVWTLIRFFLRTERSEAGERA*
Ga0137429_116964013300011437SoilMSPRVRVQHRLNVVLQMVTALITAILLGQLWLFTITLEAMDNGAVPPKVAGAAAVCSLVACGSIWVLIRFFLRMEQSQTGDLR*
Ga0137432_102265813300011439SoilMTSDVRIRNRLNVVLQMVTVLITAILLGQLWLFTITLDAMENTAVSTTVALAATTCSMVACGAVWTLIRFFLRTERSEAGERA*
Ga0137452_100657543300011441SoilMSPKVPIRNRLNVVLQMVTVLITAILLGQLWLFTITLDAMENTAVSITVALAATTCSMVACAAGWMLIRFFLLTERSEAGEHA*
Ga0137427_1030607423300011445SoilLQMVTTLITAILLGQLWLFTVTLDVMETPAASIGIAIAAAVCSLVACGAVWVLIRFFLTAEQIETGDRS*
Ga0137319_103794523300012167SoilMTTNLHIRNRLNVVLQMVTVLITAILLGQLWLFTITLDAMENTAVSTTVALAATTCSMVACGAVWMLIRFFLRTERSEAGERA*
Ga0157284_1013997123300012893SoilMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFLN
Ga0157291_1007655123300012902SoilMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLLACGTVWVLIRFFLSTEHSETGE*
Ga0164301_1160402813300012960SoilRMNPGVHHRRRMNVVLQMVTALTTAILLAQLWLFTVTLDAMENSAASMSVALTAVTFSFLACGAVWILIRFFLNAEQAETGSDRER*
Ga0126369_1027373343300012971Tropical Forest SoilMSLGMRVRDRMNVILQMVTTLIAAILLGQLWLFSIALDAMENRTVSMRVAIVAASISMLACIAIWMLIRFFLRREQNETGERA*
Ga0157375_1189270513300013308Miscanthus RhizosphereNSMSPQVRVRHRMNVVLQMVMAIISAILLGQLWLFTVTLDAMENHAVSMNVAIAAVVCSLMACSAVWMLIRFFLRTEQTETGDRF*
Ga0157375_1201031913300013308Miscanthus RhizosphereMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLLACGTVWVLIRF
Ga0157375_1299171613300013308Miscanthus RhizosphereGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS*
Ga0163163_1250806423300014325Switchgrass RhizosphereVSSRIRSRLNVILQMVTALIVVVLLGQLWLFTVTLDAMENGAISGQVTAAAAVCSLVACGAIWMLIRYFLRTEAAETGERQ*
Ga0157380_1012206813300014326Switchgrass RhizosphereMNVGTRVRERMNVVLQMVMALITAILLGQLWLFTIALDAMENHAVSMDVAAVATLCSLVACLAIWMLIRFFLRTEQYETGDRS*
Ga0157380_1136217013300014326Switchgrass RhizosphereMSPQIRVRHRLNVVLQMVMALITAILLGQLWLFTITLEAMDNGAVSPKVAGAAAVCSLVACSSIWILIRF
Ga0132258_1020177733300015371Arabidopsis RhizosphereMNPGIQRRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSIVACGSVWVLIRFFLNTEQTETGERF*
Ga0132258_1022170223300015371Arabidopsis RhizosphereMNVVLQMITALIAAVLLLQLWLFTVAIDDMENGSVSIRVAAATVLCSFVAFAASWMLIRFFLRTEQNETGERK*
Ga0132258_1247395723300015371Arabidopsis RhizosphereMNVVLQMVTTLIAALLLGQLWLFTIVLDAMENRAVSMSVAIAAAACSLVACAATWMLIRFFLRTEQRQTGERP*
Ga0132258_1397594923300015371Arabidopsis RhizosphereMNVVLQMVTALITAILLGQLWLFTVTLDAMENPASSMSIAIAAAVCSILACGSVWILIRFFLNTEQMETGERS*
Ga0132257_10212688513300015373Arabidopsis RhizosphereMNPGIQRRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSIVACGSVWVLIRFFLNTEQTETGERS*
Ga0132255_10233454823300015374Arabidopsis RhizosphereMNSGIHHRRRMNVVLQMVTALTTAILLAQLWLFTVTLDAMENSAASLSVAITAVTFSFLACGAVWILIRFFLSAEQAETRSDRER*
Ga0163161_1011419543300017792Switchgrass RhizosphereMNPGIQRRRRMNDLLQMVAALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS
Ga0184628_1022905933300018083Groundwater SedimentMNPGIPQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSILACGSVWVLIRFFLSTEQAETGERS
Ga0190272_1192473223300018429SoilMRSNTQQRRRMDVVLQMVTALITAILLGQLWLFTVTLDVMENPAVSIRVAIAAAVCSLVGCGAVWVLIRFFLNAEQSETGERS
Ga0190270_1036089923300018469SoilMSPGTQRRNRMNVVLQMVTTLITAILLGQLWLFTVTLDVMETPAASIGIAIAAAVCSLVACGAVWVLIRFFLTAEQIETGDRS
Ga0190274_1008133123300018476SoilMSPQFRVQHRMNVVLQMVLTLIAAILLAQLWLFTVTLDAMENHAVSMNVAIAAAVCSLVACASIWMLIRFFLRTEQTQTGDRF
Ga0126371_1129976423300021560Tropical Forest SoilMSPKVRIRHRLNVVLQMVTALITAILLGQLWLFTITLDAMENGAMPSTVAGAAAACSIVACGTIWMLIRFFLRMEQSQPGDMQ
Ga0247746_102545623300022886SoilMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSMSVAIAAAICSLMACGTVWVLIRFFLSTEHSETGE
Ga0247800_106315513300023263SoilRQKRTGPRPAGGNSMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSMSVAIAAAICSLMACGTVWVLIRFFLSTEHSETGE
Ga0207680_1000932943300025903Switchgrass RhizosphereMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIQFFLNTEQTETGERS
Ga0207662_1005975343300025918Switchgrass RhizosphereMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIRFFLNTEQTETGE
Ga0207662_1033277923300025918Switchgrass RhizosphereVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS
Ga0207650_1000747573300025925Switchgrass RhizosphereMNPGMQRRRRMNVVLQMVTTLITAILLGQLWLFTVTLEAMENPAASMSVATAAAICSVVACGSVWVLIRFFLNTEQTETGERS
Ga0207659_1000835433300025926Miscanthus RhizosphereMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS
Ga0207659_1032217623300025926Miscanthus RhizosphereMSSTTRVRDRMKVLLQMVMAFIAVILLVQLWLFTVALDAMENGSASVGVAVATIFCSFAACLAVWMLIRFFLRTEQHETGERL
Ga0207701_1067170923300025930Corn, Switchgrass And Miscanthus RhizosphereMSAKVRVRHRLNVVLQMVMALVTAILLGQLWLFTISLEAMDNRAVSPKVAGAAAVCSLVACGSIWILIRFFLRMEQSQSGDLR
Ga0207701_1076273723300025930Corn, Switchgrass And Miscanthus RhizosphereMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLMACGTVWVLIRFFLSTEHSETGE
Ga0207670_1094221313300025936Switchgrass RhizosphereMSPTTRVRDRMKVLLQMVMAFIAVILLVQLWLFTVALDAMENGSASVGVAVATIFCSFAACLAVWMLIRFFLRTEQHETGERL
Ga0207669_1011284033300025937Miscanthus RhizosphereMNPGIPQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSILACGSVWVLIQFFLSTEQAETGERS
Ga0207691_1002718563300025940Miscanthus RhizosphereMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIRFFLNTEQTETGERS
Ga0207679_1002139213300025945Corn RhizosphereVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVAFGSVWVLIQFFLNTEQTETGERS
Ga0207679_1100403613300025945Corn RhizosphereMSPTTRVRDRMKVLLQMVMAFIAVILLVQLWLFTVALDAMENGSASVGVAVATIFCSFAACLAVWMLIRFFLRTEQHE
Ga0207651_1169420913300025960Switchgrass RhizosphereMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLI
Ga0207641_10001647163300026088Switchgrass RhizosphereMNPATQQRRRMNVVLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAVAAAICSIVLLEVCGY
Ga0207641_1070252423300026088Switchgrass RhizosphereMNPSIQRRRGMNVVLQMVTALITAILLGQLWLFTVTLDAMENPASSMSIAIAAAVCSILACGSVWVLIRFFLNTEQMETGERS
Ga0209486_1054851223300027886Agricultural SoilMSPGTQRRNRMNVVLQMVTTLITAILLGQLWLFTVTLEVMETPAASIGIAIAAAVCSLVACGAVWVLIRFFLTAEQIETGDRS
Ga0207428_1001946743300027907Populus RhizosphereMNVGTRVRERMNVVLQMVMALITAILLGQLWLFTIALDAMENHAVSMDVAAVAAVCSLVACITIWMLIRFFLRTEQYETGDRS
Ga0209382_1124995723300027909Populus RhizosphereMSPRIRVRHRLNIVLQMVTTLITAILLGQLWLFTIMLDAMENSSASPTLVAGAAVCSLVGCGAIWMLIRFFLRREQWETEV
Ga0268264_1185294323300028381Switchgrass RhizosphereMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASMSVAIAAAICSIVAFGSVWVLIRFFLNTEQTETGERS
Ga0310888_1045666823300031538SoilTGPRPAGGNGMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLMACGTVWVLIRFFLSTEHSETGE
Ga0310813_1077457023300031716SoilMSPRTRVRDRMNVVLQMITALIAAVLLLQLWLFTVAIDDMENGSVSIRVAVATVLCSFVAFAASWMLIRFFLRTEQNETGERN
Ga0310904_1057356213300031854SoilMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFMN
Ga0310900_1052852023300031908SoilMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSMSVAIAAAVCSLMACGTVWVLIRFFLSTEHSETGE
Ga0310885_1002555313300031943SoilPAGGNGMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLMACGTVWVLIRFFLSTEHSETGE
Ga0310895_1046438723300032122SoilMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSISVAIAAAVCSLMACGTVWVL
Ga0315910_1075434723300032144SoilMNARSQVRSRLNVVLQMVTALITAILLAQLWLFTITLEAMENGAVSTGVAVAAAVCSFFACGSIWMLIRFFLRTEHAQTGEGR
Ga0315912_1001115153300032157SoilMSPQVRVRDRMNVVLQMVMAIIAAILLAQLWLFTVTLDAMENHAVSMNVAIAAAACSLVACASILMLIRFFLRTEHTQTGERF
Ga0315912_1002909923300032157SoilMSPMPRIRNRLNVVLQMVTALITAILLAQLWLFTVTLDAMENSGAAIQIVVAAVACSAVACTAIWMLIRFFLRTEHNETGDRF
Ga0307471_10277276823300032180Hardwood Forest SoilMNAAIHQRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENSAASMSVAIIAVTFSVLACGAVWILIRFFLSAEQAETGNDRAR
Ga0310896_1091002713300032211SoilMSPGIQKRNRLNVVLQMVTALITAILLGQLWLFTVTLDAMESSAVSMSVAIAAAVCSLMACGTVWVLIRFFLSTE
Ga0214471_1151086123300033417SoilMSPTVHKRQRMNVVLQMVTALIAAILLGQLWLFTVALDTMENTSASISIAAAAAICSLVACVSVWALIRFFLRTEQAETESDLELR
Ga0314801_211141_263_4993300034676SoilMNPGIQRRRRMNVLLQMVTALITAILLGQLWLFTVTLDAMENPAASISVAIAAAICSIVAFGSVWVLIRFFLNTEQTET


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.