Metagenome / Metatranscriptome Family F048330

Overview

Basic Information

• Family ID: F048330
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 148
• Average Sequence Length: 37 residues
• Representative Sequence: NRFIVLVDNSIEISNISLTPKDLIDTHHIMTLIMKS
• Number of Associated Samples: 123
• Number of Associated Scaffolds: 148

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 4.14 %
• % of genes near scaffold ends (potentially truncated): 92.57 %
• % of genes from short scaffolds (< 2000 bps): 85.81 %
• Associated GOLD sequencing projects: 112
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (73.649 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater (18.243 % of family members)
• Environment Ontology (ENVO): Unclassified (52.027 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (95.270 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 43.75%
  β-sheet: 0.00%
  Coil/Unstructured: 56.25%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 148 Family Scaffolds
PF03306	AAL_decarboxy	14.19
PF10503	Esterase_PHB	9.46
PF01381	HTH_3	5.41
PF00578	AhpC-TSA	4.73
PF08281	Sigma70_r4_2	2.70
PF04264	YceI	2.70
PF12867	DinB_2	2.70
PF09603	Fib_succ_major	2.03
PF10067	DUF2306	1.35
PF13360	PQQ_2	0.68

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 148 Family Scaffolds
COG3527	Alpha-acetolactate decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	14.19
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	2.70
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.35
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.68
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.68
COG1770	Protease II	Amino acid transport and metabolism [E]	0.68
COG5309	Exo-beta-1,3-glucanase, GH17 family	Carbohydrate transport and metabolism [G]	0.68

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.32 %
Unclassified	root	N/A	25.68 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.65 %
Unclassified	root	N/A	25.68 %
Viruses	superkingdom	All Organisms → Viruses	0.68 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
Unclassified	root	N/A	25.68 %

Level 4

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.68 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	54.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.68 %
Unclassified	root	N/A	25.68 %

Level 5

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	40.54 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.68 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
Unclassified	root	N/A	25.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.68 %

Level 6

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	40.54 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.68 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
Unclassified	root	N/A	25.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.68 %

Level 7

Name	Rank	Taxonomy	Distribution
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.68 %
Deltaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis	0.68 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	27.70 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
Pleurocapsales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
Unclassified	root	N/A	25.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.68 %

Level 8

Name	Rank	Taxonomy	Distribution
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.68 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	25.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
Hyellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Hyellaceae	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
SAR324 cluster	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster	0.68 %
Unclassified	root	N/A	25.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.68 %

Level 9

Name	Rank	Taxonomy	Distribution
Cyclobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae	0.68 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	15.54 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
Myxosarcina	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Hyellaceae → Myxosarcina	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
SAR324 cluster	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster	0.68 %
Unclassified	root	N/A	25.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.68 %

Level 10

Name	Rank	Taxonomy	Distribution
Formosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Formosa	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
Maribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter	1.35 %
Nonlabens	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Nonlabens	0.68 %
Polaribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Polaribacter	2.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
SAR324 cluster	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster	0.68 %
Unclassified	root	N/A	25.68 %
unclassified Cyclobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → unclassified Cyclobacteriaceae	0.68 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	1.35 %
unclassified Myxosarcina	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Hyellaceae → Myxosarcina → unclassified Myxosarcina	0.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.68 %

Level 11

Name	Rank	Taxonomy	Distribution
Cyclobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → unclassified Cyclobacteriaceae → Cyclobacteriaceae bacterium	0.68 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1.35 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
Maribacter antarcticus	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → Maribacter antarcticus	1.35 %
Myxosarcina sp. GI1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Hyellaceae → Myxosarcina → unclassified Myxosarcina → Myxosarcina sp. GI1	0.68 %
Nonlabens spongiae	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Nonlabens → Nonlabens spongiae	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
SAR324 cluster	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster	0.68 %
Unclassified	root	N/A	25.68 %
unclassified Formosa	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Formosa → unclassified Formosa	0.68 %
unclassified Polaribacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Polaribacter → unclassified Polaribacter	1.35 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.68 %

Level 12

Name	Rank	Taxonomy	Distribution
Cyclobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → unclassified Cyclobacteriaceae → Cyclobacteriaceae bacterium	0.68 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1.35 %
Formosa sp. Hel1_33_131	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Formosa → unclassified Formosa → Formosa sp. Hel1_33_131	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
Maribacter antarcticus	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → Maribacter antarcticus	1.35 %
Myxosarcina sp. GI1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Hyellaceae → Myxosarcina → unclassified Myxosarcina → Myxosarcina sp. GI1	0.68 %
Nonlabens spongiae	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Nonlabens → Nonlabens spongiae	0.68 %
Polaribacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Polaribacter → unclassified Polaribacter → Polaribacter sp.	0.68 %
Polaribacter sp. Hel1_33_78	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Polaribacter → unclassified Polaribacter → Polaribacter sp. Hel1_33_78	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %
SAR324 cluster	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster	0.68 %
Unclassified	root	N/A	25.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.68 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300024259|Ga0233437_1154368	Not Available	1039
(restricted) 3300024264|Ga0233444_10266302	Not Available	754
(restricted) 3300024302|Ga0233449_1130825	Not Available	840
(restricted) 3300024327|Ga0233434_1009812	All Organisms → cellular organisms → Bacteria	6149
3300000101|DelMOSum2010_c10022978	All Organisms → cellular organisms → Bacteria	3588
3300000101|DelMOSum2010_c10147464	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	870
3300000101|DelMOSum2010_c10268498	Not Available	526
3300000115|DelMOSum2011_c10205003	Not Available	547
3300000207|SI48aug10_10mDRAFT_c1004050	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1530
3300000224|SI34jun09_10mDRAFT_1040647	All Organisms → cellular organisms → Bacteria → FCB group	649

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.68%
Marine	Environmental → Aquatic → Marine	98.65%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.68%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	27.03%
Inlet	Environmental → Aquatic → Marine → Inlet	3.38%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	29.73%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	8.11%
Oceanic	Environmental → Aquatic → Marine → Oceanic	6.76%
Pelagic	Environmental → Aquatic → Marine → Pelagic	16.89%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified	6.76%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.68%

Subtype

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	15.54%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.68%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.70%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	27.03%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	16.89%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	11.49%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	8.11%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	6.76%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	6.08%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.38%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.68%

Habitat

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.05%
Bay Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water	0.68%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	15.54%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.03%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.03%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.68%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	1.35%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	10.14%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	5.41%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.70%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.03%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.68%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.68%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.68%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	4.05%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	13.51%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	4.05%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.68%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.70%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	18.24%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	3.38%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	2.70%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.35%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.68%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental
3300000207	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 10m	Environmental
3300000224	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m	Environmental
3300000225	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 120m	Environmental
3300000254	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 100m	Environmental
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental
3300001351	Pelagic Microbial community sample from North Sea - COGITO 998_met_03	Environmental
3300001352	Pelagic Microbial community sample from North Sea - COGITO 998_met_07	Environmental
3300002154	Marine eukaryotic phytoplankton communities from the South Atlantic Ocean - 30m ANT-15 Metagenome	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100229782	3300000101	Marine	MTLVVDNSFEISNISLTPKVLIDTHYIMTLIMKE*
DelMOSum2010_101474643	3300000101	Marine	KKYNRFIVLVAFSIEISNVNFTPKDLIDSHHIITIIMKS*
DelMOSum2010_102684982	3300000101	Marine	KKYNRFIVLVAFSIEISNVNFTPKDLIDSHHIITLIMKS*
DelMOSum2011_102050032	3300000115	Marine	LKGLVVDNSIEISNISLTPRELIDTHHIMTLIMKGSGV*
SI48aug10_10mDRAFT_10040503	3300000207	Marine	VLVDNSIEISNISITARDLIDTYHLMTLILQYSDS*
SI34jun09_10mDRAFT_10406473	3300000224	Marine	VLVDNSFEISNISFIPRDLIDTHHIMTLITKSST*
SI34jun09_120mDRAFT_10439453	3300000225	Marine	NSISFIVLVDNSIEISNISFIPRDLIDTHHIMTLIMKSST*
SI34jun09_100mDRAFT_10215723	3300000254	Marine	FIVLVDNSIEISNISITARDLIDTYHLMTLILQYSDS*
OpTDRAFT_100595451	3300000928	Freshwater And Marine	RFIVLVDNSIEISNISITARDLIDTYHLMTLILQYSDS*
OpTDRAFT_101804451	3300000928	Freshwater And Marine	YNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIIKS*
JGI20153J14318_100035941	3300001351	Pelagic Marine	YNRFIVLVDNSFEISNISLTPRDLIETHNLMTLIMKE*
JGI20153J14318_101733411	3300001351	Pelagic Marine	FLVDNSIEISNLSFTPRELIDTHHIMTLIVKSST*
JGI20157J14317_100428212	3300001352	Pelagic Marine	MKYNRFIVLVDNSIEISNISFTPKDLIDTHHIMSLIMKGSGI*
JGI24538J26636_101577902	3300002154	Marine	RFIVLVEFSIEISNISFTPKYLIDTHHIMTLIMKS*
JGI24539J26755_100329021	3300002186	Marine	MKTLVVDNSIEVSNISLTPKNLIDTHHIMTLIMKSST*
Ga0076924_11477561	3300005747	Marine	YKSISFIVLVDNSFEISNIGFTPKDLIDTHHIMTLIMKS*
Ga0078893_102667181	3300005837	Marine Surface Water	PSCVVDNSIEISNLSFTPRELIDTHHIMTLIMKSST*
Ga0078893_104068912	3300005837	Marine Surface Water	PSCVVDNSFEISNISFTPKDLIDTHHIMSLVMKGST*
Ga0078893_111709981	3300005837	Marine Surface Water	VVDNSLEISNISLNPRDLIDTHNIMTLILKYSDS*
Ga0070743_100765212	3300005941	Estuarine	YNRFIVLVDNSIEISNISITARDLIDTYHLMTLILQYSDS*
Ga0070743_101109862	3300005941	Estuarine	KYNRFIVLVDNLLEISNKLLTARDFLDTHDLITIILKEQP*
Ga0075511_10111631	3300006402	Aqueous	PSSFVDNSIEISNISFTPKDLFDTHHIMSLIMNE*
Ga0075511_17665182	3300006402	Aqueous	FIVLVDNSLEISNISLTPRDIIDTHHIMTLIMMC*
Ga0101440_1110921	3300006616	Marine Surface Water	TSPSCVVDNSIEISNLSFTPRELIDTHHIMTLIMKSST*
Ga0101442_1030171	3300006622	Marine Surface Water	FTSPSCEVDNFIEISNISLTTKNIIYTHYIITFIMKS*
Ga0101445_1088402	3300006643	Marine Surface Water	KLLDFSRCFFVDNSFEISNIRLTPKDLIDTHHTMILILKE*
Ga0075468_102107541	3300007229	Aqueous	MITLVVDNSIEISNISITARDLIDTYHLMTLILQYSDS*
Ga0102818_10131171	3300007552	Estuarine	YNRFIVLVDNSIEISNISITARDLIDTHNLMTLILKYSDS*
Ga0102818_10192983	3300007552	Estuarine	MKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIMN
Ga0102819_10454013	3300007553	Estuarine	FIVLVDNSIEISNISLTPKDLIDTHHIMTLIMNE*
Ga0102871_10550742	3300007620	Estuarine	VLVDNSLEISNISFTPKDLIDAHHIMTLILKGST*
Ga0102827_11289002	3300007715	Estuarine	LVDNYIEISNISITARDLIDTHHLMTLILKYLDS*
Ga0105740_10844521	3300007955	Estuary Water	PFLVACVVDNSLEISNISFTPKDLIDAHHIMTLILKGST*
Ga0102907_10265581	3300007962	Estuarine	NRFIVLVDNSIEISNISFTPRDLIDTHNLMILIMKS*
Ga0102907_10461251	3300007962	Estuarine	NRFIVLVDNSIEISNISLTPKDIIDTHHMTLIMKS*
Ga0103486_10062263	3300008921	Bay Water	YNRFIVLVDNSIEISNINLTPRDLIDTHHIITLIMKSKKIR*
Ga0102887_10524981	3300008961	Estuarine	GYTFMKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIIKS*
Ga0102887_11162843	3300008961	Estuarine	MKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLI
Ga0102816_10205835	3300008999	Estuarine	NRFIVLVDNSVEISNISLTPRDLIDTHHIMTLIMKS*
Ga0102909_10674301	3300009050	Estuarine	NRFIVLVDNSLEISNISSTPRDLINTHHIMTLIIKS*
Ga0102815_102389071	3300009080	Estuarine	RFIVLVDNSIEISNISFTPRELIDTHHIMTLIMKN*
Ga0114995_100214955	3300009172	Marine	LVVDNSFEISNISLTPRELIDTHNLMTLVMKGLGV*
Ga0114995_102589331	3300009172	Marine	RFIVLVDNSIEISNISFTPKDLIDTHHIMTLIMKS*
Ga0114994_103911382	3300009420	Marine	YNRFIVLVDNSIEISNIRLTPRDLIDTHHIMTLIMNE*
Ga0115548_10086876	3300009423	Pelagic Marine	SDYSLVGFSIEISNISLTPKDLIDTHHIMTLIMKS*
Ga0115548_11781581	3300009423	Pelagic Marine	NRFIVLVDNSIEISNISFTPKDLIDTHHIMSLIMKS*
Ga0114997_101511261	3300009425	Marine	RFIVLVDNSIEISNISLTPKDLIETHHIMTLIMKS*
Ga0115547_12830112	3300009426	Pelagic Marine	FIVLVDNSIEISNISLTPKDLIDTHHIMTLIMKS*
Ga0115562_10080231	3300009434	Pelagic Marine	FIVLVDNSIEISNISLTPKDLIETHHIMILIMKN*
Ga0115546_11690392	3300009435	Pelagic Marine	FIVLVDNSIEISNISLTPRDIIDTHHIMTLIMKE*
Ga0115559_10381221	3300009438	Pelagic Marine	YNRFIVLVDNSIEISNISLTPKDLIDTHYIMTLIMKS*
Ga0115559_10818361	3300009438	Pelagic Marine	MTLIVDNSMEISNISPTPRDIIDTNHLMTLIMKSKKIR
Ga0115560_11437041	3300009447	Pelagic Marine	NRFIVLVDNSIEISNISLTPKDLIDTHYIMTLIMKS*
Ga0115571_10611441	3300009495	Pelagic Marine	YNRFIVLVDNSIKISNISLTPKDLIDTHYIMTLIIKS*
Ga0115569_101814681	3300009497	Pelagic Marine	VDNSMEISNISPTPRDIIDTNHLMTLIMKSKKIR*
Ga0115564_104475951	3300009505	Pelagic Marine	YNRFIVLVDNSVEISNISLTPRDLIDTHHIMTLIMKS*
Ga0115572_100800354	3300009507	Pelagic Marine	YNRFIVLVDNSIEISNISLTPKDLIDTHHIMTLIMKS*
Ga0115003_102210861	3300009512	Marine	YNRFIVLVDNSIEISNISLTPRDLIDTHHIITLIMKS*
Ga0115101_14281333	3300009592	Marine	KNGYTFMKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIMKS*
Ga0129325_10444432	3300012516	Aqueous	RFIVTVDNSIEISNISFIPRDLIDTHHIMTLIMKSST*
Ga0129331_11240314	3300012524	Aqueous	RFIVLVDNSIEISNISFTPKDLIDTHHIMTLIMNE*
Ga0163109_103132163	3300012936	Surface Seawater	NRFIVLVDNSLEISNISLTPRDIIDTHHIMTLIMMC*
Ga0182045_12709092	3300016726	Salt Marsh	NRFIVLVDNSLEISNISLTPRDFLNTYSLITLVSQKIK
Ga0182043_11946752	3300016748	Salt Marsh	FIVLVDNSLEISNISLTPRDFLNTYSLITLVSQKIK
Ga0182095_11038861	3300016791	Salt Marsh	YNRFIVLVDNSFEISNISLTPRDIIDTHRIMTLIMMC
Ga0181567_108754082	3300018418	Salt Marsh	FFVDNSFEISNLSFTPRELIDTHHIMTLVMKGSGV
Ga0206128_11234021	3300020166	Seawater	IVLVDNSIEISNISITARDLIDTYHLMTLILQYSDS
Ga0206128_12314862	3300020166	Seawater	LSFLKGLLVDNSIEISNLSFTPRELIDTHHIMTLIMKGSGV
Ga0206131_100343215	3300020185	Seawater	MTLVVDNSIEISNISLTPRELIYTHHIMTLIMKGSGV
Ga0206130_100433041	3300020187	Seawater	KYNRFIVLVDNSIEISNISFTPRDLIDTHHIMSLVMKS
Ga0206130_104515822	3300020187	Seawater	NRFIVLVDNSLEISNISITPRDLIDTHHIMTLIMKE
Ga0211685_10639782	3300020253	Marine	YNRFIVLVDNSFEISNISLTPRDLINTHQLMTLIMKS
Ga0211554_102340732	3300020431	Marine	IKVNRFIVLVDNSIEISNISLTPKDLIDTHHIMTLIMKN
Ga0206678_104006971	3300021084	Seawater	SRSFFVDNSVEISNISLTPRDLIDTHHIMTLIMKS
Ga0222717_102340763	3300021957	Estuarine Water	IINGLNFVDNSIEISNISLTPKDLIDTHHIMTLIMKS
Ga0222717_102459952	3300021957	Estuarine Water	FIVLVDNSIEISNIRITPRDLIDTHHIMTLILKEKL
Ga0222715_105606982	3300021960	Estuarine Water	ENFKGLLVDKSMEISNISITPRDLIDTHHIMTLIMN
Ga0228679_10040522	3300023566	Seawater	FIVLVDNSFEISNISFTPKDLIDAHHIMTLILKGST
Ga0228694_1236011	3300023567	Seawater	RFIVLVDNSLEISNISSTPRDLINTHHIMTLIIKS
Ga0232113_10099042	3300023679	Seawater	FIVLVDNSLEISNISFTPKDLIDAHHIMTLILKGST
Ga0228686_10081912	3300023685	Seawater	YNRFIVLVDNSLEISNISFTPKDLIDAHHIMTLILKGST
Ga0228682_10041381	3300023698	Seawater	RFIVLVDNSLEISNISFTPKDLIDAHHIMTLILKGST
Ga0228601_10041521	3300024223	Seawater	RFIVLVDNSFEISNISLTPKDLIDTHHIMSLIMKE
Ga0228633_10382181	3300024228	Seawater	KYNRFIVLVDNSVEISNISLTPRDLIDTHHIMTLIMKS
Ga0228665_10417261	3300024235	Seawater	YNRFIVLVENSIEISNISITARDLIDTHHLMTLILKYSDS
Ga0228675_10176101	3300024247	Seawater	NRFIVLVDNSIEISNISLTPKDLIDTHHIMTLIMKS
Ga0228677_10135801	3300024250	Seawater	LVIKIVLVDNSLEISNISFTPKDLIDAHHIMTLILKGST
(restricted) Ga0233437_11543681	3300024259	Seawater	NPGPYCLVDNSFEISNISITARDLIDTYHLMTLILQYSDS
(restricted) Ga0233444_102663021	3300024264	Seawater	RSFLVDNSIEISNISLTPRELIDTHHIMTLIMKGSGV
Ga0228660_10390342	3300024291	Seawater	SSNTDPSCVVDNSIEISNISLTPRDIIDTHHIMTLIMMC
Ga0228651_10597901	3300024293	Seawater	NRFIVLVDNSLEISNISITPRDFLNTYSLITLVSQKIK
(restricted) Ga0233449_11308252	3300024302	Seawater	GPYCLVDNSFEISNISITARDLIDTYHLMTLILQYSDS
Ga0228618_10948371	3300024315	Seawater	RFIVLVDNPIEISNISFTPKDLFDTHHIMSLIINE
Ga0228656_10436794	3300024322	Seawater	TKYKKKIVLDNSIEISNISLTPKDLIDTHHIMTLIMKS
(restricted) Ga0233434_10098129	3300024327	Seawater	DYSLVDNSFEISNIRFTPKDLIDTHHIMTLIMKSST
Ga0228671_10485322	3300024334	Seawater	NTGTSCVVDNSIEISNISFNLRDLIDTHNLMTLIMKS
Ga0228671_10683911	3300024334	Seawater	YNRFIVLVDNYFEISNISITPRDFLNTYSLITLVSQKIK
Ga0233396_11060641	3300024428	Seawater	GYTFMKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIIKS
Ga0209716_10942512	3300025626	Pelagic Marine	RFIVLVDNSIEISNISITARDLIDTYHLMTLILQYSDS
Ga0209659_10408691	3300025658	Marine	YNRFIVLVDNSIEISNISLTPKDLIDTHHIMTLIMKS
Ga0209659_11361221	3300025658	Marine	RLFFVDNSIEISNISLTPRELIDTHHIMTLIMKGSGV
Ga0209306_10252231	3300025680	Pelagic Marine	YNRFIVLVDNSLEISNISITPKDLIDTHNLMTLVMKGSGV
Ga0209140_11146392	3300025688	Marine	FIVLVDNSIEISNLSFTPRELIDTHHIMTLIVKSST
Ga0209406_10813921	3300025694	Pelagic Marine	ISDCFFLVDNSMEISNISPTPRDIIDTNHLMTLIMKSKKIR
Ga0209771_10152316	3300025701	Marine	KKGLQMKTLVVDNSIEISNISLTPRDLIDTHHIMTLIMNE
Ga0209252_11040101	3300025719	Marine	FIVLVDNSVEISNISLTPKNLIDTHHIMTLIMKSST
Ga0209252_11429122	3300025719	Marine	FIVIVEFSIEISNISFTPKDLIDTHHIMTLIMKGSGV
Ga0209252_11461051	3300025719	Marine	RFIVIVEFSIEISNISFTPKDLIDTHHIMTLIMMC
Ga0208545_11244662	3300025806	Aqueous	MITLVVDNSIEISNISITARDLIDTYHLMTLILQYSDS
Ga0209199_10834311	3300025809	Pelagic Marine	YNRFIVLVDNSIEISNISFTPRDLIDTHHIMSLVMKS
Ga0209199_11059831	3300025809	Pelagic Marine	NRFTVLVDNSMEISNISPTPRDIIDTNHLMTLIMKSKKIR
Ga0209199_12930332	3300025809	Pelagic Marine	REWFIVPLEAVDNSIEISNISLTPKDLIDTHHIMTLIMKE
Ga0209603_11900881	3300025849	Pelagic Marine	YNRFIVLVDNSVEISNISLTPRDLIDTHHIMTLIMKS
Ga0209308_102511181	3300025869	Pelagic Marine	KYNRFNVIVDNSFKISNISFTPKDLIDTHHIMSLIMKS
Ga0209533_11703061	3300025874	Pelagic Marine	RFIVLVDNSIEISNISLTPKDIIDTHHIMTLIMKS
Ga0209223_100592873	3300025876	Pelagic Marine	YNRFIVLVDNSIEISNISLTPRDIIDTHHIMTLIMKE
Ga0209534_101521861	3300025880	Pelagic Marine	MTLVVDNSIEISNLSFTPRELIDTHHIMTLIMKGS
Ga0209932_10183231	3300026183	Pond Water	NRFIVIVDNSLEISNISITPKDLIDTHNLMTLVMKGSGV
Ga0247570_10218031	3300026426	Seawater	NRFIVLVDNSFEISNISLTPKDLIDTHHIMSLIMKE
Ga0247604_10589591	3300026460	Seawater	RFIVLVDNSLEISNISITPKDLIDTHHIMTLIMKS
Ga0247604_10911451	3300026460	Seawater	RFIVLVDNSMEISNISLTPRDLIDTHHIMTLILNE
Ga0247592_10269053	3300026500	Seawater	FKKYNRFIVLVDNSFEISNISLTLRDLIDTHHIMTLIMKE
Ga0208921_10362141	3300027188	Estuarine	IVLVDNSLEISNISFTPKDLIDAHHIMTLILKGST
Ga0208674_10240321	3300027190	Estuarine	IVLVDNSFEISNIRFTPKDLIDTHHIMTLIMKSST
Ga0208799_10244703	3300027194	Estuarine	NRFIVLVDNSLEISNISSTPRDLINTHHIMTLIIKS
Ga0208438_10472701	3300027196	Estuarine	NRFIVLVDNSVEISNISLTPRDLIDTHHIMTLIMKS
Ga0208309_10124261	3300027226	Estuarine	NRFIVLVDNSIEISNISFTPKDLIDTHHIMSLIMKGSGI
Ga0208308_10332122	3300027228	Estuarine	ISDDLLVDNSIEISNISFTPRELIDTHHIMTLIVKSST
Ga0208172_10171401	3300027231	Estuarine	KYNRFIVLVDNSFEISNISLTPRDLIDTHHIMTLIMNKLIIFIFLKMN
Ga0208803_10356323	3300027232	Estuarine	NHFIVLVDNSIEISNISLTPKDLIDTHHIMTLIMKS
Ga0208678_10471311	3300027233	Estuarine	FMKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIIKS
Ga0208809_10134861	3300027251	Estuarine	MKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIMNKLIIFIFLKMN
Ga0208680_10161051	3300027253	Estuarine	RFIVLVDNSFEISNISITARDLIDTYHLMTLILQYSDS
Ga0208949_10743951	3300027315	Marine	KYNRFIVLVDNSIEISNISLTPKDLIDTHHIMTLIMKS
Ga0208947_10635852	3300027553	Marine	KYNRFIAVVDKSIEISNICLTPRDFIDTHYIMTLIMKG
Ga0208947_11279782	3300027553	Marine	YNRFIVLVDNSLEISNISITPRDIIDTHHIMTLIMKS
Ga0208897_10939641	3300027571	Estuarine	SLDIEKKLRLKGLLVDNSIEISNISFTPRELIDTHHIMTLIVKSST
Ga0208971_10805502	3300027582	Marine	KYNRFIVLVDNLLEISNKLLTARDFLDTHDLITIILKEQP
Ga0209192_100113823	3300027752	Marine	MKTLVVDNSIEISNISLTPKNLIDTHHIMTLIMKSST
Ga0228642_10458601	3300028131	Seawater	MKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIMNKLII
Ga0256411_10487181	3300028134	Seawater	KLLDFSRSFFVDNSLEISNISFTPKDLIDAHHIMTLILKGST
Ga0257106_10661802	3300028194	Marine	NRFIVLVDNSIEISNLSFTPRELIDTHHIMTLIVKSST
Ga0257120_10474404	3300028284	Marine	YNRFIVLVDNSFEISNISITPKDLIDTHHIMTLIMKS
Ga0233394_10210031	3300028391	Seawater	MKYNRFIVLVDNSLEISNISSTPRDLINTHHIMTLIMNK
Ga0228639_10984602	3300028397	Seawater	NRFIVLVDNSLEISNISLTPKDLFDTHHIMTLIMKSST
Ga0228614_10499462	3300028416	Seawater	KYNRFIVLVDNSFEISNIGFTPRDLIHTHNLMTRIMKS
Ga0228615_11841431	3300028418	Seawater	YNRFIVLVDNSLEISNISLTPKDLIDTHHIMTLIMKS
Ga0315321_104785851	3300032088	Seawater	KYNRFIVLVDNSFEISNISLTPRDLIDTHHIMTLIMNE