Metagenome / Metatranscriptome Family F047980

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F047980
Family Type	Metagenome / Metatranscriptome
Number of Sequences	149
Average Sequence Length	60 residues
Representative Sequence	MERDLERVTLDALMLLQEVAASGRADTAALIAKFRPERQRARRLSEYCDEIFAEIRVA
Number of Associated Samples	109
Number of Associated Scaffolds	149

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.52 %
% of genes near scaffold ends (potentially truncated)	21.48 %
% of genes from short scaffolds (< 2000 bps)	88.59 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.745 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (10.738 % of family members)
Environment Ontology (ENVO)	Unclassified (29.530 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.745 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.30% β-sheet: 0.00% Coil/Unstructured: 40.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 149 Family Scaffolds
PF07238	PilZ	1.34
PF02608	Bmp	1.34
PF00132	Hexapep	1.34
PF08241	Methyltransf_11	0.67
PF01135	PCMT	0.67
PF00881	Nitroreductase	0.67
PF00083	Sugar_tr	0.67
PF02826	2-Hacid_dh_C	0.67
PF08450	SGL	0.67
PF02525	Flavodoxin_2	0.67
PF00440	TetR_N	0.67
PF07479	NAD_Gly3P_dh_C	0.67
PF00903	Glyoxalase	0.67
PF13817	DDE_Tnp_IS66_C	0.67
PF13670	PepSY_2	0.67

COG ID	Name	Functional Category	% Frequency in 149 Family Scaffolds
COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	Signal transduction mechanisms [T]	1.34
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.67
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.67
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.67
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.67
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.67
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.67
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.07 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	59.06 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	59.06 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	58.39 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	55.70 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	14.77 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	11.41 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.01 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.34 %
Bradyrhizobium zhanjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	1.34 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	14.77 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	11.41 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.34 %
Bradyrhizobium zhanjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	1.34 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.67 %
Bradyrhizobium sp. ORS 375	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 375	0.67 %
Bradyrhizobium sp. LTSP885	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885	0.67 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.67 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320006\|FACEOR_FYWIORV02HTU70	Not Available	514	Open in IMG/M
2199352025\|deepsgr__Contig_37566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1427	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100745269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1523	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101326459	Not Available	742	Open in IMG/M
3300000789\|JGI1027J11758_12169504	Not Available	539	Open in IMG/M
3300000955\|JGI1027J12803_101530006	Not Available	612	Open in IMG/M
3300000955\|JGI1027J12803_101759300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1624	Open in IMG/M
3300001305\|C688J14111_10045127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1328	Open in IMG/M
3300001431\|F14TB_102824881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1582	Open in IMG/M
3300002568\|C688J35102_118886266	Not Available	609	Open in IMG/M
3300002568\|C688J35102_119922077	Not Available	815	Open in IMG/M
3300003659\|JGI25404J52841_10000264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6632	Open in IMG/M
3300003659\|JGI25404J52841_10003407	All Organisms → cellular organisms → Bacteria → Proteobacteria	3139	Open in IMG/M
3300003659\|JGI25404J52841_10027625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1220	Open in IMG/M
3300004153\|Ga0063455_101649776	Not Available	507	Open in IMG/M
3300004463\|Ga0063356_103900039	Not Available	642	Open in IMG/M
3300004479\|Ga0062595_100154993	Not Available	1340	Open in IMG/M
3300004479\|Ga0062595_101981275	Not Available	561	Open in IMG/M
3300005331\|Ga0070670_100732660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	890	Open in IMG/M
3300005331\|Ga0070670_102059717	Not Available	526	Open in IMG/M
3300005332\|Ga0066388_100397704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2023	Open in IMG/M
3300005332\|Ga0066388_101483081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1185	Open in IMG/M
3300005332\|Ga0066388_102846462	Not Available	884	Open in IMG/M
3300005335\|Ga0070666_10946018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	638	Open in IMG/M
3300005340\|Ga0070689_100888442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	788	Open in IMG/M
3300005347\|Ga0070668_100027559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	4313	Open in IMG/M
3300005356\|Ga0070674_100755827	Not Available	836	Open in IMG/M
3300005367\|Ga0070667_100526165	Not Available	1085	Open in IMG/M
3300005437\|Ga0070710_10355230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	971	Open in IMG/M
3300005455\|Ga0070663_100115090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2025	Open in IMG/M
3300005466\|Ga0070685_10427661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	923	Open in IMG/M
3300005467\|Ga0070706_101418738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	635	Open in IMG/M
3300005617\|Ga0068859_100524086	Not Available	1280	Open in IMG/M
3300005764\|Ga0066903_108082220	Not Available	539	Open in IMG/M
3300005840\|Ga0068870_10310083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	999	Open in IMG/M
3300005841\|Ga0068863_100084213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3014	Open in IMG/M
3300005842\|Ga0068858_100580215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1087	Open in IMG/M
3300005844\|Ga0068862_100961597	Not Available	843	Open in IMG/M
3300005844\|Ga0068862_101526649	Not Available	674	Open in IMG/M
3300005937\|Ga0081455_10002514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	21763	Open in IMG/M
3300005937\|Ga0081455_10037371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	4314	Open in IMG/M
3300005937\|Ga0081455_10102681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2292	Open in IMG/M
3300005937\|Ga0081455_11051190	Not Available	503	Open in IMG/M
3300005983\|Ga0081540_1004094	All Organisms → cellular organisms → Bacteria → Proteobacteria	11267	Open in IMG/M
3300005983\|Ga0081540_1006236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8737	Open in IMG/M
3300005983\|Ga0081540_1084405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1417	Open in IMG/M
3300005983\|Ga0081540_1108865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1177	Open in IMG/M
3300006058\|Ga0075432_10345880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	629	Open in IMG/M
3300006058\|Ga0075432_10356335	Not Available	621	Open in IMG/M
3300006854\|Ga0075425_100415324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1550	Open in IMG/M
3300006854\|Ga0075425_100426202	All Organisms → cellular organisms → Bacteria → Proteobacteria	1528	Open in IMG/M
3300006871\|Ga0075434_100389944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1414	Open in IMG/M
3300006871\|Ga0075434_101144981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	791	Open in IMG/M
3300006904\|Ga0075424_100234150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1952	Open in IMG/M
3300006904\|Ga0075424_101012725	Not Available	886	Open in IMG/M
3300006914\|Ga0075436_101319403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	546	Open in IMG/M
3300009094\|Ga0111539_13094053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	537	Open in IMG/M
3300009098\|Ga0105245_11834447	Not Available	659	Open in IMG/M
3300009100\|Ga0075418_11387638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	762	Open in IMG/M
3300009100\|Ga0075418_12360234	Not Available	580	Open in IMG/M
3300009101\|Ga0105247_10469977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	910	Open in IMG/M
3300009148\|Ga0105243_11356440	Not Available	730	Open in IMG/M
3300009162\|Ga0075423_10790832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1003	Open in IMG/M
3300009162\|Ga0075423_12104130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	612	Open in IMG/M
3300009789\|Ga0126307_10103609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	2256	Open in IMG/M
3300009792\|Ga0126374_10101523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1633	Open in IMG/M
3300010046\|Ga0126384_11794497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	582	Open in IMG/M
3300010047\|Ga0126382_10405163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1066	Open in IMG/M
3300010047\|Ga0126382_11259271	Not Available	666	Open in IMG/M
3300010360\|Ga0126372_10862725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	904	Open in IMG/M
3300010362\|Ga0126377_11793083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	689	Open in IMG/M
3300010362\|Ga0126377_12819678	Not Available	560	Open in IMG/M
3300010366\|Ga0126379_12654447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	598	Open in IMG/M
3300010375\|Ga0105239_11142219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	897	Open in IMG/M
3300010403\|Ga0134123_13066048	Not Available	536	Open in IMG/M
3300011003\|Ga0138514_100105072	Not Available	614	Open in IMG/M
3300011119\|Ga0105246_10141022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1812	Open in IMG/M
3300012212\|Ga0150985_100368119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	1079	Open in IMG/M
3300012469\|Ga0150984_102197577	Not Available	551	Open in IMG/M
3300012469\|Ga0150984_108998226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	1377	Open in IMG/M
3300012477\|Ga0157336_1001408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1237	Open in IMG/M
3300012481\|Ga0157320_1011062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	706	Open in IMG/M
3300012490\|Ga0157322_1016034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	674	Open in IMG/M
3300012492\|Ga0157335_1025083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	592	Open in IMG/M
3300012494\|Ga0157341_1010685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	783	Open in IMG/M
3300012497\|Ga0157319_1046879	Not Available	524	Open in IMG/M
3300012941\|Ga0162652_100108309	Not Available	503	Open in IMG/M
3300012955\|Ga0164298_11259624	Not Available	564	Open in IMG/M
3300012957\|Ga0164303_10411858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	838	Open in IMG/M
3300012984\|Ga0164309_11760327	Not Available	531	Open in IMG/M
3300014325\|Ga0163163_11023870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	889	Open in IMG/M
3300014326\|Ga0157380_11065776	Not Available	845	Open in IMG/M
3300015200\|Ga0173480_11095608	Not Available	531	Open in IMG/M
3300015371\|Ga0132258_10431104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3283	Open in IMG/M
3300015371\|Ga0132258_11192187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1925	Open in IMG/M
3300015371\|Ga0132258_11326880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1818	Open in IMG/M
3300015371\|Ga0132258_12653537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1251	Open in IMG/M
3300015372\|Ga0132256_101087607	Not Available	914	Open in IMG/M
3300015372\|Ga0132256_103270264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	545	Open in IMG/M
3300015374\|Ga0132255_100469961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 375	1844	Open in IMG/M
3300017792\|Ga0163161_11305529	Not Available	631	Open in IMG/M
3300018000\|Ga0184604_10205317	Not Available	677	Open in IMG/M
3300018081\|Ga0184625_10386838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	723	Open in IMG/M
3300018429\|Ga0190272_10077993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885	2039	Open in IMG/M
3300018429\|Ga0190272_10130470	Not Available	1687	Open in IMG/M
3300018465\|Ga0190269_11858111	Not Available	517	Open in IMG/M
3300018466\|Ga0190268_10127832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1248	Open in IMG/M
3300018476\|Ga0190274_10002242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11344	Open in IMG/M
3300018476\|Ga0190274_10109400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2223	Open in IMG/M
3300018481\|Ga0190271_10611108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1210	Open in IMG/M
3300022756\|Ga0222622_10747947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	712	Open in IMG/M
3300023263\|Ga0247800_1062318	Not Available	700	Open in IMG/M
3300025899\|Ga0207642_10914924	Not Available	562	Open in IMG/M
3300025901\|Ga0207688_10072885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1951	Open in IMG/M
3300025907\|Ga0207645_10100479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1866	Open in IMG/M
3300025908\|Ga0207643_11001625	Not Available	540	Open in IMG/M
3300025925\|Ga0207650_11122697	Not Available	669	Open in IMG/M
3300025935\|Ga0207709_10250512	Not Available	1293	Open in IMG/M
3300025960\|Ga0207651_11198628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	682	Open in IMG/M
3300025961\|Ga0207712_10204368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1568	Open in IMG/M
3300026023\|Ga0207677_11084426	Not Available	729	Open in IMG/M
3300026023\|Ga0207677_11788690	Not Available	570	Open in IMG/M
3300027907\|Ga0207428_10229885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1388	Open in IMG/M
3300027907\|Ga0207428_11095381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	557	Open in IMG/M
3300028379\|Ga0268266_10764047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	933	Open in IMG/M
3300028379\|Ga0268266_10931666	Not Available	840	Open in IMG/M
3300028379\|Ga0268266_11733097	Not Available	600	Open in IMG/M
3300028536\|Ga0137415_10068851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3403	Open in IMG/M
3300028536\|Ga0137415_10587834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	924	Open in IMG/M
3300028590\|Ga0247823_10801597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	707	Open in IMG/M
3300028786\|Ga0307517_10340707	Not Available	819	Open in IMG/M
3300028802\|Ga0307503_10721634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	562	Open in IMG/M
3300029984\|Ga0311332_11323101	Not Available	582	Open in IMG/M
3300030000\|Ga0311337_10220393	Not Available	1564	Open in IMG/M
3300031058\|Ga0308189_10139582	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300031184\|Ga0307499_10205460	Not Available	608	Open in IMG/M
3300031720\|Ga0307469_10698205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	920	Open in IMG/M
3300031720\|Ga0307469_10892349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	823	Open in IMG/M
3300031740\|Ga0307468_100806424	Not Available	801	Open in IMG/M
3300031740\|Ga0307468_101528914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	620	Open in IMG/M
3300031854\|Ga0310904_11453338	Not Available	500	Open in IMG/M
3300031902\|Ga0302322_102959781	Not Available	585	Open in IMG/M
3300032174\|Ga0307470_10954746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	678	Open in IMG/M
3300032174\|Ga0307470_11850809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	512	Open in IMG/M
3300032180\|Ga0307471_101167753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	935	Open in IMG/M
3300032205\|Ga0307472_100392626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1157	Open in IMG/M
3300034127\|Ga0370489_0083878	Not Available	927	Open in IMG/M
3300034127\|Ga0370489_0185925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	616	Open in IMG/M
3300034676\|Ga0314801_179593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.02%
Environmental	Environmental	46.98%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	53.02%
Terrestrial	Environmental → Terrestrial	44.97%
Aquatic	Environmental → Aquatic	2.01%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.16%
Sediment	Environmental → Aquatic → Sediment	2.01%
Peat	Environmental → Terrestrial → Peat	2.01%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.34%
Roots	Host-Associated → Plants → Roots	1.34%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	20.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.41%
Loam	Environmental → Terrestrial → Soil → Loam	8.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.01%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.34%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.34%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.67%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.67%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	20.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.36%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.01%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.01%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.01%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.34%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.34%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.67%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.67%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.40%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	7.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.37%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.37%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	4.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.36%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.01%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.01%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.34%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.34%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.34%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.34%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.34%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.34%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.34%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.34%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.67%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.67%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.67%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.67%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320006	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034127	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_16	Environmental	Open in IMG/M
3300034676	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORE_1960710	2032320006	Soil	MAYNLERVSIDALISLQEVAASGRADTAALIAKFRPDRQRAKRLNEYCDEIFAEILTEPRQAG
deepsgr_00279040	2199352025	Soil	MECDLERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA
INPhiseqgaiiFebDRAFT_1007452693	3300000364	Soil	MAYDLERVSLDALISLQEVAASGRADTAALIAKFRPERQRVRRLNEYRDEIFAEILTAPRQAG*
INPhiseqgaiiFebDRAFT_1013264593	3300000364	Soil	VRELTTARGINDMEQNLEQVPLDALLSLQEVAASGRADIAALIAKFRPERQRAKRLSEYCEEIFAEIRVA*
JGI1027J11758_121695042	3300000789	Soil	MEQNLEQVPLDALLSLQEVAASGRADIAALIAKFRPERQRAKRLSEYC
JGI1027J12803_1015300061	3300000955	Soil	MEQNLEQVPLDALLSLQEVAASGRADIAALIAKFRPERQRAKRLSEYCEEIFAEIRVA*
JGI1027J12803_1017593002	3300000955	Soil	MEHDLERVSIDALMSLQEIAASGRADIAALIAKFRAQRQRAKRLDNYRDEIFDEISVS*
C688J14111_100451272	3300001305	Soil	MECDLERVTLDALMLLQEVATSGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA*
F14TB_1028248812	3300001431	Soil	MEHDLERVSIDALMSLQEIAASGRADIAALIAKXRAQRQRAKRLDNYRDEIFAEISVS*
C688J35102_1188862661	3300002568	Soil	MECGLERVTLDTLLLLHEVAASGRADIAALITKSNRERERARRLSEYCNEIFAEIRVA*
C688J35102_1199220771	3300002568	Soil	MECGLERVTLDNLLLLQEIAASGRADIAALITKSHPERQIAKRLSEYCDEIFAEIRVA*
JGI25404J52841_100002646	3300003659	Tabebuia Heterophylla Rhizosphere	MELDLERVSLDALISLQEVAASGRADTAALIAKFRPERQRAQRLNEYCDEIFAEILTPPRKAG*
JGI25404J52841_100034075	3300003659	Tabebuia Heterophylla Rhizosphere	MEFDLERVSLDALISLQEVAAAGRADTAAVIAKFRPERQRAKRLNEYCDEIFAEILPPPRKAG*
JGI25404J52841_100276252	3300003659	Tabebuia Heterophylla Rhizosphere	MEQNLEQVPLDALMPLQEVAASGRADTAALIAKFRPERQTAKHKRLTDFCDRMLAEIRIP
Ga0063455_1016497761	3300004153	Soil	MECDLERVTLDALMLLQEVATSGRADTAALIAKFRTDRQRARRLSEYCEEIFAEIRVA*
Ga0063356_1039000391	3300004463	Arabidopsis Thaliana Rhizosphere	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQERARRLSEYCDEIFAEIRVA*
Ga0062595_1001549931	3300004479	Soil	MQQNLEHIPLDALMSLQEVASSGRADTAALIAKFRPDRQSAKHKRLTDFCEKILAEIRIN
Ga0062595_1019812751	3300004479	Soil	MECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRVRLLTEYCHEIFAEIRVA*
Ga0070670_1007326603	3300005331	Switchgrass Rhizosphere	VTLDTLLLLQEVAASGRADIAALITKSNPERERARRLSEYCNEIFAEIRVA*
Ga0070670_1020597171	3300005331	Switchgrass Rhizosphere	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRVRLLTEYCHEIFAEIRVA*
Ga0066388_1003977044	3300005332	Tropical Forest Soil	MEFDLERVSLDALISLQEVAASGRADTAAVIAKFRSEQQRAKRLNEYCDEIFAEILTPPRKAG*
Ga0066388_1014830813	3300005332	Tropical Forest Soil	MKGINASRGASKMELDLERVSLDALIALQEVAASGRADTAALIAKFRPERQRARRLNEYCDEIFAEILTPPRKAG*
Ga0066388_1028464622	3300005332	Tropical Forest Soil	MQQNLEQIPIDALISLQEVAAAGRADTAALIAKFRPERQRAKRLSEFCDEIFAEIRLS*
Ga0070666_109460182	3300005335	Switchgrass Rhizosphere	MECGLERVTLDTLLLLQEVVASGRADIAALITKSNPERERVRRLSEYCNEIFAEIRVA*
Ga0070689_1008884422	3300005340	Switchgrass Rhizosphere	MECDFERVTLDALMLLQEVAASGRADTAALITKFRTERQRARRLSEYCEEIFAEIRVA*
Ga0070668_1000275591	3300005347	Switchgrass Rhizosphere	MECGLERVTLDTLLLLQEVAASGRADIAALITKSNPERERARRLSEYCNEIFAEIRVA*
Ga0070674_1007558271	3300005356	Miscanthus Rhizosphere	GLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRARRLSEYCHEIFAEIRVA*
Ga0070667_1005261651	3300005367	Switchgrass Rhizosphere	RSKMECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRVRLLTEYCHEIFAEIRVA*
Ga0070710_103552302	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MECDLERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA*
Ga0070663_1001150901	3300005455	Corn Rhizosphere	MECGLERVTLDTLLLLQEVAASGRADIAALITKSNPERERVRRLSEYCNEIFAEIRVA*
Ga0070685_104276612	3300005466	Switchgrass Rhizosphere	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRARRLSEYCHEIFAEIRVA*
Ga0070706_1014187382	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAYDLERVSIDALISLQEVAASGRADTAALIAKFRPERQRVRRLNEYCDEIFAEILTPPRKAG*
Ga0068859_1005240862	3300005617	Switchgrass Rhizosphere	MESDFERVTLDALMLLQEVAASGRADTAALITKFRTERQRARRLSEYCEEIFAEIRVA*
Ga0066903_1080822201	3300005764	Tropical Forest Soil	MEFDLERVSLDALISLQEVAASGRADTAAVIAKFRPERQRAKRLNQYRDEIFAEILPAPREVG*
Ga0068870_103100832	3300005840	Miscanthus Rhizosphere	RRSKMECGLERVTLDTLLLLQEVAASGRADIAALITKSNPERERVRRLSEYCNEIFAEIRVA*
Ga0068863_1000842138	3300005841	Switchgrass Rhizosphere	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRARLLTEYCHEIFAKIRVA*
Ga0068858_1005802152	3300005842	Switchgrass Rhizosphere	MECDFERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA*
Ga0068862_1009615971	3300005844	Switchgrass Rhizosphere	DALLLLHEVAASGRADIAALIAKSRPEQQRARRLSEYCHEIFAEIRVA*
Ga0068862_1015266491	3300005844	Switchgrass Rhizosphere	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPELQRARRLSEYCDEIFAEIRVA*
Ga0081455_1000251425	3300005937	Tabebuia Heterophylla Rhizosphere	MELDLKRVSLDALISLQEVAASGRADTAALIAKFRPERQRARRLNEYCDEIFAEILTAPRQAG*
Ga0081455_100373715	3300005937	Tabebuia Heterophylla Rhizosphere	MAYDLERVSLDALIALQEVAASGRADTAALIAKFRPERQRAKRLNEYRDEIFAEILPAPREAG*
Ga0081455_101026811	3300005937	Tabebuia Heterophylla Rhizosphere	MWGASKMAYNLERVSVDALISLQEVAASGRADTAALIAKFRPERQRAKRLNEYCDEIFAEILTPPRRAG*
Ga0081455_110511901	3300005937	Tabebuia Heterophylla Rhizosphere	MGHDLERVSIDALISLQEIAASGQADIAALIANFRAQRRRAKRLDNYRDEIFAEIRLS*
Ga0081540_10040949	3300005983	Tabebuia Heterophylla Rhizosphere	MGASKMEFDLERVSLDALISLQEVAASGRADTAALIAKFRPERQRAKRLNEYCDEIFAEILAPPRKAG*
Ga0081540_10062362	3300005983	Tabebuia Heterophylla Rhizosphere	MQQNLEQIPLDALMSLQEVAASGRADTAALIAKFRPEQPRAKRLSEFCDEIFAEIPDLVRRG*
Ga0081540_10844052	3300005983	Tabebuia Heterophylla Rhizosphere	MENNFQQVSLDNLMSLQEIAASGRADIAALIAKFPPERQRAKGLNEYFEEILADIRAS*
Ga0081540_11088653	3300005983	Tabebuia Heterophylla Rhizosphere	MAYDLEGVSVDALISLQEVVASGRADTAALIAKFRPERQRAKRLNQYRDEIFAEILPAPREAG*
Ga0075432_103458802	3300006058	Populus Rhizosphere	MEHGLERVSLEVLVSLQEVAASGRTDVAAVIAKFRPERQRARRLSEYCDEIFAEIRVA*
Ga0075432_103563352	3300006058	Populus Rhizosphere	MGHDLERVSIDALISLQEVAASGQADIAALIANFRALRRRAKRLENYRDEIFAEIRLS*
Ga0075425_1004153243	3300006854	Populus Rhizosphere	MAYDLERVSLDSLISLQEVAASGRADTAALIAKFRPDRQRAKRLNEYCDEIFAEILTEPRQAG*
Ga0075425_1004262022	3300006854	Populus Rhizosphere	MEYDLERVSIDALMSLQEVAASGRADIAALIAKFRAQRRRATRLDNYRDEIFAEISFS*
Ga0075434_1003899441	3300006871	Populus Rhizosphere	MAYNLERVSIDALISLQEVAASGRADTAALIARFRPERQRVKRLNEYCDEIFAEILTEPRQAG*
Ga0075434_1011449812	3300006871	Populus Rhizosphere	MEFDLERVSLDALISLQEVAASGRADTAALIAKFRPERQRARRLNEYCDEIFAEILTAPRQAG*
Ga0075424_1002341501	3300006904	Populus Rhizosphere	MAYNLERVSIDALISLQEVAASGRADTAALIAKFRPDRQRAKRLNEYCDEIFAEILTEPRQAG*
Ga0075424_1010127251	3300006904	Populus Rhizosphere	MENGLEHVSLDVLMSLQEVAASGRADVAALIAKFRPERQRARRLSEYCDEIFAEIRVA*
Ga0075436_1013194031	3300006914	Populus Rhizosphere	DVLMSLQEVAASGRADIAALIAKFRPERQRARRLSEYCDEIFAEIRVA*
Ga0111539_130940531	3300009094	Populus Rhizosphere	SMQRISASGGSKMEHGLERVSLEVLVSLQEVAASGRTDVAAVIAKFRPERQRARRLSEYCDEIFAEIRVA*
Ga0105245_118344471	3300009098	Miscanthus Rhizosphere	MECDLERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCHEIFAEIRVA*
Ga0075418_113876381	3300009100	Populus Rhizosphere	MGHDLERVSIDALISLQEIAASGQADIAALIANFRALRRRAKRLENYRDEIFAEIRLS*
Ga0075418_123602341	3300009100	Populus Rhizosphere	MEQNLEQVPLDALMSLQEVAASGRADISAIIAKYRPERQRAKRLSQYCEEIFAEIRVA*
Ga0105247_104699771	3300009101	Switchgrass Rhizosphere	MECDLERVTLDALMLLQEVAASGRADTAALITKFRTERQRARRLSEYCEEIFAEIRVA*
Ga0105243_113564401	3300009148	Miscanthus Rhizosphere	RRSKMECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRVRLLTEYCHEIFAEIRVA*
Ga0075423_107908321	3300009162	Populus Rhizosphere	MAYDLERVSLDALISLQEVAASGRADTAALIAKFRPERQRVRRLNEYCDEIFAEILTPPRKAG*
Ga0075423_121041302	3300009162	Populus Rhizosphere	KMEHGLERVSLEVLVSLQEVAASGRTDVAAVIAKFRPERQRARRLSEYCDEIFAEIRVA*
Ga0126307_101036092	3300009789	Serpentine Soil	MECGLERVTLNTLLLLQEVAASGRADIAALIIKSNPERERARRLSEYCNEIFAEIRVA*
Ga0126374_101015232	3300009792	Tropical Forest Soil	MEFDLERVSLDALISLQEVAASGRADTAAVIAKFRSERQRAKRLNEYCDEIFAEILTPPRKAG*
Ga0126384_117944971	3300010046	Tropical Forest Soil	QHQCGGSKMDNGLERVSLDVLMSLQEVAASGHADIAALIAKFRPERQRANRLSEYCDEIFAEIRVA*
Ga0126382_104051632	3300010047	Tropical Forest Soil	MAYDLERVSLDALIALQEVAASGRADTAALIAKFRPERQRVRRLNEYCDEILAEILTAPPQAG*
Ga0126382_112592711	3300010047	Tropical Forest Soil	MEYDLEGVSIDALMSLQEIAASGRADIAALIANFRAQRRRAKRLDNYRDEIFAEIRLS*
Ga0126372_108627251	3300010360	Tropical Forest Soil	MEFDLERVSLDALISLQEVAASGRADTAALIAKFRSERQRAKRLNEYCDEIFAEILTPPRKAG*
Ga0126377_117930832	3300010362	Tropical Forest Soil	GCKMAYDLEGVSVDALISLQEVVASGRADTAAVIAKFRPERQRAKRLNEYCDEIFAEILPAPREAG*
Ga0126377_128196781	3300010362	Tropical Forest Soil	MKRINANMGGCKMAYDLEGVSVDALISLQEVVASGRADTAALIAKFRPERQRAKRLNQYRDEIFAEILPAPREAG*
Ga0126379_126544472	3300010366	Tropical Forest Soil	VSLDALISLQEVAASGRADTAALIAKFRSERQRAKRLNEYCDEIFAEILTPPRKAG*
Ga0105239_111422193	3300010375	Corn Rhizosphere	LERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLNEYCEEIFAEIRVA*
Ga0134123_130660482	3300010403	Terrestrial Soil	MECGLERVTLDALLLLHEVAASGRADIAALITKSNPERERARRLSEYCNEIFAEIRVA*
Ga0138514_1001050721	3300011003	Soil	MECDLERVTADALLLLQEVAASGRADTAALIAKFRTERQRARRLSDYCDEIFAEIRVA*
Ga0105246_101410221	3300011119	Miscanthus Rhizosphere	ERVTLDTLLLLQEVAASGRADIAALITKSNPERERVRRLSEYCNEIFAEIRVA*
Ga0150985_1003681191	3300012212	Avena Fatua Rhizosphere	WRFKMECGLERVTLDNLLLLQEIAASGRADIAALITKSRPERQIAKRLSEYCDEIFAEIRVA*
Ga0150984_1021975771	3300012469	Avena Fatua Rhizosphere	MECDLERVTVDALMLLQEVAASGRADIAAVVAKFRPEQQRVRRLSEYFDEIFAEIRVA*
Ga0150984_1089982261	3300012469	Avena Fatua Rhizosphere	RSKMECGLERVTLDNLLLLQEIAASGRADIAALITKSHPERQIAKRLSEYCDEIFAEIRVA*
Ga0157336_10014082	3300012477	Arabidopsis Rhizosphere	MEYDLERVSVDALMSLQEVAASGRADIAALIAKFRAQRRRAKRLDNYRDEIFAEISFS*
Ga0157320_10110621	3300012481	Arabidopsis Rhizosphere	MAYNLERVSIDALISLQEVAASGRADTAALIAKFRPDRQRAKRLNEYCDEIFAEILTAPRQAG*
Ga0157322_10160342	3300012490	Arabidopsis Rhizosphere	ENGLERVSLDVLMSLQDVAASGRADIAALIAKFRPERQRARRLSEYCDEIFAEIRVA*
Ga0157335_10250832	3300012492	Arabidopsis Rhizosphere	MENGLERVSLDVLMSLQEVAASGRADVAALIAKFRPERQRARRLSEYCDEIFAEIRVA*
Ga0157341_10106853	3300012494	Arabidopsis Rhizosphere	SKTEYDLERVSIDALMSLQEVAASGRADIAALIAKFRAQRRRATRLDNYRDEIFAEISFS
Ga0157319_10468791	3300012497	Arabidopsis Rhizosphere	MAYNLERVSIDALISLQEVAASGRADTAALIAKFRPERQRVRRLSEYCDEIFAEIRVA*
Ga0162652_1001083091	3300012941	Soil	LERVTLDALMLLQDVAASGRADTAALIAKFRTERQRARRLSDYCEEIFAEIRVA*
Ga0164298_112596241	3300012955	Soil	MEGGLERVTLDALMLLHEVASSGRADIAALIAKSRPERQRARRLSEYCEEIFAEIRVA*
Ga0164303_104118581	3300012957	Soil	MECDLERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEI
Ga0164309_117603271	3300012984	Soil	MECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRARLLTEYCHEIFAEIRVA*
Ga0163163_110238702	3300014325	Switchgrass Rhizosphere	MECDLERVTLDGLMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA*
Ga0157380_110657762	3300014326	Switchgrass Rhizosphere	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPELQRARRLSEYCHEIFAEIRVA*
Ga0173480_110956081	3300015200	Soil	MECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRDRLLTEYCHEIFAEIRVA*
Ga0132258_104311045	3300015371	Arabidopsis Rhizosphere	MECDLERVTADALMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA*
Ga0132258_111921871	3300015371	Arabidopsis Rhizosphere	MEQNLEQVPLDVLVSLQEVATSGSADIAALIAKFRPERQRAKRLSEYCEEIFAEIRVA*
Ga0132258_113268801	3300015371	Arabidopsis Rhizosphere	GGSKMENGLERVSLDVLMSLQEVAASGRADIAALIAKFRPELQRARRLSEYCDEIFAEIRVA*
Ga0132258_126535372	3300015371	Arabidopsis Rhizosphere	MEFDLERVSLDALVALQEVAASGRADTAAVIAKFRPERQRAKRLNEYCDEIFADILTPPRKAG*
Ga0132256_1010876072	3300015372	Arabidopsis Rhizosphere	MEQNLEQVPLDALVSLQEVAASGSADIAALIAKFRPERQRAKRLSEYCEEIFAEIRVA*
Ga0132256_1032702641	3300015372	Arabidopsis Rhizosphere	GGSKMENGLERVSLDVLMSLQEVAASGRADIAALIAKFRPERQRARRLSEYCDEIFAEIRVA*
Ga0132255_1004699613	3300015374	Arabidopsis Rhizosphere	MEQNLEQVPLDALVSLQEVAASGSADIAALIAKFRPERQRAKRLSEYCEEIFAKIRVA*
Ga0163161_113055291	3300017792	Switchgrass Rhizosphere	MECDFERVTLDALMLLQEVAASGRADTAALITKFRTERQRARRLSEYCEEIFAEIRVA
Ga0184604_102053171	3300018000	Groundwater Sediment	MECGLERVTLDTLLLLQEVAASGRADIAALIIKSNPERERARRLSEYCNEIFAEIRVA
Ga0184625_103868382	3300018081	Groundwater Sediment	MECDLERVTLDALMLLQEVAASGRADTAALIVKFRTERQRARRLSEYCEEIFAEIRVA
Ga0190272_100779931	3300018429	Soil	MERDLERVTLDALMLLQEVAASGRADTAALIAKFRPERQRARRLSEYCDEIFAEIRVA
Ga0190272_101304703	3300018429	Soil	MECDLERVTADALMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA
Ga0190269_118581112	3300018465	Soil	MECDLERVTLDALMLLQDVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA
Ga0190268_101278322	3300018466	Soil	MWRSKMECGLERVTLDALLLLHEVAASGRADIEALIAKSRPEQQRAKRLSEYCDEIFAEIRVA
Ga0190274_1000224213	3300018476	Soil	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRARRLSEYCHEIFAEIRVA
Ga0190274_101094002	3300018476	Soil	MWRSKMECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRARRLSEYCDEIFAEIRVA
Ga0190271_106111082	3300018481	Soil	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRARRLSEYCDEIFAEIRVA
Ga0222622_107479471	3300022756	Groundwater Sediment	MECDLERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLSDYCEEIFAEIRVA
Ga0247800_10623181	3300023263	Soil	MECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRVRLLTEYCHEIFAEIRVA
Ga0207642_109149241	3300025899	Miscanthus Rhizosphere	MECGLERVTLDALLLLQEVAASGREDIAALITKSRPERQRAKRLSEYCDEIFAEIRVA
Ga0207688_100728852	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MECGLERVTLDTLLLLQEVAASGRADIAALITKSNPERERARRLSEYCNEIFAEIRVA
Ga0207645_101004793	3300025907	Miscanthus Rhizosphere	MECGLERVTLDTLLLLQEVAASGRADIAALITKSNPERERVRRLSEYCNEIFAEIRV
Ga0207643_110016251	3300025908	Miscanthus Rhizosphere	MECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRVRLLTEYCHEIFAEIR
Ga0207650_111226972	3300025925	Switchgrass Rhizosphere	MECGLERVTLDTLLLLQEVAASGRADIAALITKSNPERERARRLSEYCNEIFAEI
Ga0207709_102505122	3300025935	Miscanthus Rhizosphere	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQQRVRLLTEYCHEIFAEIRVA
Ga0207651_111986282	3300025960	Switchgrass Rhizosphere	MECGLERVTLDALLLLQEVAASGRADIAALITKSNPERERVRRLSEYCNEIFAEIRVA
Ga0207712_102043681	3300025961	Switchgrass Rhizosphere	MECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRARRLSEYCHEIFAEIRVA
Ga0207677_110844261	3300026023	Miscanthus Rhizosphere	MECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRARLLTEYCHEIFAKIRVA
Ga0207677_117886901	3300026023	Miscanthus Rhizosphere	MECDFERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLSGYCEEIFAEIRVA
Ga0207428_102298852	3300027907	Populus Rhizosphere	MECGLERVTLDTLLLLQEVAASGRADIAALITKSNPERERVRRLSEYCNEIFAEIRVA
Ga0207428_110953811	3300027907	Populus Rhizosphere	MEHGLERVSLEVLVSLQEVAASGRTDVAAVIAKFRPERQRARRLSEYCDEIFAEIRVA
Ga0268266_107640472	3300028379	Switchgrass Rhizosphere	MECGLERVTLDALLLLQEVAASGRADIAALIAKSRPEQQRARLLTEYCH
Ga0268266_109316661	3300028379	Switchgrass Rhizosphere	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPELQRARRLSEYCDEIFAEIRVA
Ga0268266_117330971	3300028379	Switchgrass Rhizosphere	MECGPERVTLDALLLLQEVAASGRADIAALIAKSRPEQERARRLSEYCDEIFAGIRVA
Ga0137415_100688511	3300028536	Vadose Zone Soil	MELDLKSMSLDALFSLHEVAASGRADTAALIAKFRAQRQRTQRLNEYRNQIVAEIHASLEVSQ
Ga0137415_105878343	3300028536	Vadose Zone Soil	VSGMEYDLKPMSLDTLFSLREVVASGRADTAALIAKFRAQRQRTQRLNEYCNQIVAEIHASLDALQ
Ga0247823_108015971	3300028590	Soil	MECGLERVTLDALLLLHEVAASGRADIAALIAKSRPEQERARRLSEYCDEIFAEIRVA
Ga0307517_103407071	3300028786	Ectomycorrhiza	MEGGLERVTLDALMLLHEVASSGRADIAALIAKSRPERQRARRLSEYCEEIFAEIRVA
Ga0307503_107216341	3300028802	Soil	RRSKMECGLERVTLDTLLLLHEVAASGREDIAALITKSRPERQRAKRLSEYCDEIFAEIRVA
Ga0311332_113231011	3300029984	Fen	MECGLERVTLDALMLLQEVAASGRADVAAVIAKFRPEQQRVRRLSEYCDEIFAEIRVA
Ga0311337_102203933	3300030000	Fen	MECGLERTTLDALLLLHEVAASGRADIAALIAKSRPEGQRAKRLSEYCHEIFAEIRVA
Ga0308189_101395823	3300031058	Soil	KMECDLERVTLDALMLLQEVAASGRADTAALIAKFRTERQRARRLSEYCEEIFAEIRVA
Ga0307499_102054601	3300031184	Soil	MKGIRASGGSEMEYGREQVSLDALMSLQEVLAAGRADTAALIAKFRPERQRTRRLSEYCDEIFAEIRVA
Ga0307469_106982052	3300031720	Hardwood Forest Soil	MEHDLERVSIDALMSLQEIAASGRADIAALIAKFRAQRQRAKRLDNYRDEIFAEISVS
Ga0307469_108923491	3300031720	Hardwood Forest Soil	MAYNLERVSIDALISLQEVAASGRADTAALIAKFRPERQRAKRLNEYCDEIFAEILTAPRQAG
Ga0307468_1008064242	3300031740	Hardwood Forest Soil	MEFDLERVSLDALISLQEVAASGRADTAALIAKFRPERQRTRRLNEYCDEIFAEILTAPRQAG
Ga0307468_1015289142	3300031740	Hardwood Forest Soil	MEYDLERVSIDALMSLQEVAASGRADIAALIAKFRAQRRRAKRLDNYRDEIFAEISFS
Ga0310904_114533382	3300031854	Soil	MRPNKPSNADVSKGVNNRTGVNDMEQNLEQVPLDALVSLQEVAASGSADIAALIAKFRPERQRAKRLSEYCEEIFAKIRVA
Ga0302322_1029597811	3300031902	Fen	MECCLERVTLDALMLLQEVAAAGRADIAALIAKSRPEGQRARRLSEYCHEIFAEIRVA
Ga0307470_109547461	3300032174	Hardwood Forest Soil	MEYDLERVSVDALMSLQEVAASGRADIAALIAKFRAQRRRAKRLDNYRDEIFAEISFS
Ga0307470_118508091	3300032174	Hardwood Forest Soil	SKMEHDLKSMSLDELFSLHEVAASGRADTAALIAKFRAQRQRTQRLNEYRNQIVAEIYASLEVSQ
Ga0307471_1011677531	3300032180	Hardwood Forest Soil	MEHDLERVSIDALMSLQEIAASGRADIAALIANFRAQRRRAKRLDNYRDEIFAEISFS
Ga0307472_1003926261	3300032205	Hardwood Forest Soil	MKGIKTKCGGSKMERGLERVSLEALMSLQEVAASGRADIAALIAKFRPERQRARRLSEYCDEIFAEIRVA
Ga0370489_0083878_581_757	3300034127	Untreated Peat Soil	MESGLERVTLDTLLLLQEVAAAGRADICALITKSRPERQRAKRLSEYCDEIFAEIRVA
Ga0370489_0185925_433_609	3300034127	Untreated Peat Soil	MERDLEQGTLDALLLLQEVAASGQADIAALIAKFGPEQRKLRRLDEYCDEIFADIRVA
Ga0314801_179593_2_184	3300034676	Soil	NLERVSIDALISLQEVAASGRADTAALIARFRPERQRVKRLNEYCDEIFAEILTEPRQAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F047980

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences