NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F047325

Metagenome / Metatranscriptome Family F047325

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F047325
Family Type Metagenome / Metatranscriptome
Number of Sequences 150
Average Sequence Length 84 residues
Representative Sequence MTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSL
Number of Associated Samples 123
Number of Associated Scaffolds 150

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 96.64 %
% of genes near scaffold ends (potentially truncated) 97.33 %
% of genes from short scaffolds (< 2000 bps) 92.67 %
Associated GOLD sequencing projects 120
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (98.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(41.333 % of family members)
Environment Ontology (ENVO) Unclassified
(46.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(43.333 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.
1Ga0062384_1010145621
2Ga0062595_1001140183
3Ga0066677_100482783
4Ga0066676_104054331
5Ga0070667_1000154927
6Ga0070667_1009331431
7Ga0070708_1012772942
8Ga0066686_110326081
9Ga0068867_1012080741
10Ga0070734_103568161
11Ga0066701_102332942
12Ga0066707_100794071
13Ga0068856_1001827531
14Ga0068860_1001073811
15Ga0070715_107802711
16Ga0068871_1009127592
17Ga0068871_1019110402
18Ga0068871_1020252461
19Ga0066659_117683451
20Ga0079221_106254721
21Ga0105237_116400801
22Ga0126374_104553071
23Ga0126384_109646722
24Ga0126373_102289041
25Ga0126373_125471921
26Ga0134109_100324601
27Ga0126379_118896042
28Ga0126381_1021134042
29Ga0126383_108785091
30Ga0164301_111841371
31Ga0126369_116835021
32Ga0157374_115182862
33Ga0157375_109242761
34Ga0157375_115819412
35Ga0137418_101491751
36Ga0132255_1051085151
37Ga0182041_123139931
38Ga0182033_108715452
39Ga0182034_111364221
40Ga0182040_119660632
41Ga0182037_101489863
42Ga0182039_122763731
43Ga0182038_109264601
44Ga0182038_110030442
45Ga0187809_102880062
46Ga0187779_113035342
47Ga0187781_101779713
48Ga0187777_111255831
49Ga0187782_109491701
50Ga0187855_107896311
51Ga0187765_101461041
52Ga0210399_113868452
53Ga0210401_116129951
54Ga0210388_102613603
55Ga0210388_115787082
56Ga0213882_101916022
57Ga0210385_112546371
58Ga0210397_103005321
59Ga0210383_108480731
60Ga0210402_102007603
61Ga0210402_107677722
62Ga0126371_129246472
63Ga0242654_102782542
64Ga0207642_111404182
65Ga0207687_109344871
66Ga0207700_117079722
67Ga0207711_110099292
68Ga0207667_120329331
69Ga0207648_107564661
70Ga0209688_10517112
71Ga0209057_11573981
72Ga0179587_111134451
73Ga0209006_100577361
74Ga0311340_104585222
75Ga0302305_11967681
76Ga0311353_104971592
77Ga0311357_115495532
78Ga0302313_101537631
79Ga0265760_101744901
80Ga0170824_1084584021
81Ga0318534_102425952
82Ga0318528_105871751
83Ga0318573_101465871
84Ga0318555_100778441
85Ga0318555_104903111
86Ga0318574_103519351
87Ga0318560_103813421
88Ga0318496_102146942
89Ga0306917_102608263
90Ga0318493_108277181
91Ga0318501_103364792
92Ga0306918_107846861
93Ga0306918_114735272
94Ga0318492_103102612
95Ga0307477_103119971
96Ga0307477_105099942
97Ga0307475_105884542
98Ga0307475_111892812
99Ga0318535_103538382
100Ga0318554_1000155910
101Ga0318554_107294392
102Ga0318509_106403022
103Ga0318521_104207871
104Ga0318521_109351542
105Ga0318547_110863832
106Ga0318523_104768752
107Ga0318565_105359852
108Ga0318497_108211021
109Ga0318567_101173661
110Ga0318567_105207271
111Ga0318567_108375152
112Ga0307478_117772072
113Ga0318517_100091794
114Ga0318511_101149621
115Ga0318512_101774792
116Ga0318512_102751152
117Ga0318512_106511422
118Ga0318544_101570661
119Ga0318551_101124451
120Ga0318551_106357521
121Ga0318551_109034532
122Ga0318520_109379902
123Ga0306923_112775612
124Ga0306923_119896371
125Ga0306921_103509811
126Ga0306921_116380552
127Ga0310912_109635401
128Ga0310916_114537771
129Ga0318562_103578361
130Ga0318562_108980472
131Ga0318563_102032201
132Ga0318563_102899701
133Ga0318563_104933102
134Ga0318569_102639872
135Ga0310911_101740252
136Ga0318545_103356091
137Ga0318532_101072021
138Ga0318570_104120752
139Ga0318533_104843942
140Ga0318504_102768701
141Ga0318525_103297802
142Ga0318577_103930171
143Ga0318540_100052781
144Ga0306920_1003209261
145Ga0306920_1004959201
146Ga0306920_1012136511
147Ga0335078_124476911
148Ga0335077_121878132
149Ga0318519_100632893
150Ga0316624_106025962
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 34.91%    β-sheet: 11.32%    Coil/Unstructured: 53.77%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

10203040506070MTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSLSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
98.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Peatland
Bog Forest Soil
Freshwater Sediment
Soil
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Surface Soil
Soil
Agricultural Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Palsa
Exposed Rock
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
6.0%4.7%41.3%12.0%3.3%3.3%3.3%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062384_10101456213300004082Bog Forest SoilMTDRLQVEQLVRELHAARVEGNLERLCGLYAEGARLRIAGSTDGKPIAIAASGIAEIRPWLSILVK
Ga0062595_10011401833300004479SoilMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKT
Ga0066677_1004827833300005171SoilMSGRRQVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSDGKPIAIAAAGISQIRPWLGILVKTFR
Ga0066676_1040543313300005186SoilMSGRRQVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSDGKPIAIAAAGISQIRPWLGILVKTFRLSGYELRSL
Ga0070667_10001549273300005367Switchgrass RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELL
Ga0070667_10093314313300005367Switchgrass RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLS
Ga0070708_10127729423300005445Corn, Switchgrass And Miscanthus RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTS
Ga0066686_1103260813300005446SoilMSGRRQVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSDGKPIAIAAAGISQIRPWLGILVKTFRLSGYE
Ga0068867_10120807413300005459Miscanthus RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTSAAAHWRVDIESKIT
Ga0070734_1035681613300005533Surface SoilMTDRLQIEQLVHELHTARLENDVERLCGLYSAEARLRIAGSTDGKAIAIEAIGLTEIRPWLSILVKTFRLTHYTLLSLSVDAPRAAA
Ga0066701_1023329423300005552SoilMSGRRKVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSDGKPIAIAAAGISQIRPWLGILVKTFRLSG
Ga0066707_1007940713300005556SoilMSGRRQVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSDGKPIAIAAAGISQIRPWLGILVKTFRLSGY
Ga0068856_10018275313300005614Corn RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTSAAAHWRV
Ga0068860_10010738113300005843Switchgrass RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEG
Ga0070715_1078027113300006163Corn, Switchgrass And Miscanthus RhizosphereMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTLLSLSIDVPRAAAHWRVDIHS
Ga0068871_10091275923300006358Miscanthus RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRG
Ga0068871_10191104023300006358Miscanthus RhizosphereMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTLLSLSIDVPRAAAHWRVDIHSKITGVVIPTE
Ga0068871_10202524613300006358Miscanthus RhizosphereMTDRQQFEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLSQYTLLSLSVDIPRASAHWRVDIHSKIT
Ga0066659_1176834513300006797SoilMSGRRQVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSDGKPIAIAAAGISQIRPW
Ga0079221_1062547213300006804Agricultural SoilMTDRQQFEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLSQYTLLS
Ga0105237_1164008013300009545Corn RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTSAAAHWRVDIESKITGIVIPTELVDL
Ga0126374_1045530713300009792Tropical Forest SoilMTDRLQIEQLVRELHMARLEGNLESLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTLLSLTIDVPRATAHWRVDIHSKITGVVIPTE
Ga0126384_1096467223300010046Tropical Forest SoilMTDRLQIEQLVRELHGARLEGNLERLCALYAEQARLRIAGSTDGKPIAIAATGIAEIRPWLSVLVKTFRLSQYTILSLAIDVPRAAAHWRVDIHSKI
Ga0126373_1022890413300010048Tropical Forest SoilMTDRLQVEQLVREWHTARPEGDLERLCSLYADEARLRIAGSTDGKPVAIAASGIAEIRPWLSILVKTFRLTQYTILSL
Ga0126373_1254719213300010048Tropical Forest SoilMSDRLQVEQLVRELHAARLEGDLERLCALYADEARLRIAGSTDGKPIAIAATGITEIRPWLSILLKTFRLTQYTILSLSIDVPRAAAHWRVDIHSKITGV
Ga0134109_1003246013300010320Grasslands SoilMSGRRQVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSDGKPIAIAAAGISQIRPWLGILVKTFRLS
Ga0126379_1188960423300010366Tropical Forest SoilMTDRLQIEQLVRELHMARLEGNLESLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTLLSL
Ga0126381_10211340423300010376Tropical Forest SoilMTDRLQVEDLVRQLHATRLEGDLERLCALYSNEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRMSQY
Ga0126383_1087850913300010398Tropical Forest SoilMTDRPQIEQLVRELHKARLEGDFERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSLSVDVPRAAAHWR
Ga0164301_1118413713300012960SoilMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPSLSILANTFRLRGYELLSLTIEGTSAA
Ga0126369_1168350213300012971Tropical Forest SoilMTERLQVERLVKELHAARVEGDLERLCRVFAADARLRIAGSSDGKPIAIDASRLNRIRPWLSILVRT
Ga0157374_1151828623300013296Miscanthus RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTSAAAHWRVDIESKIT*
Ga0157375_1092427613300013308Miscanthus RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLR
Ga0157375_1158194123300013308Miscanthus RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLT
Ga0137418_1014917513300015241Vadose Zone SoilMTDRLQVEQLLRELHAARLDGDLERLCKLFSPDARLRIAGSSDGKPIAIAASGIGQIRSWLSMLIKTFRLSRYRLLS
Ga0132255_10510851513300015374Arabidopsis RhizosphereMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTLLSLSIDVPRA
Ga0182041_1231399313300016294SoilMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEVRPWLSILVKTFRLTQYTLLSLSIDVPRAAAHWRVDIHSKITGVVIPTELVDLIDVRGAR
Ga0182033_1087154523300016319SoilMSDRLQVEQLVRELHVARLEGDLERLCALYADEARLRIAGSTDGKPVAIAASGIAEIRPWLSILLKTFRLTQYTILSLSIDVPRAAAHWRVDIHSKITGVVVPTELVDLI
Ga0182034_1113642213300016371SoilMTDRQQVEQLVRELHAARLEGDLERLCALYADEARLRIAGSTDGKPIAIAATGIAEIRPWLSILLKTFRLTQYT
Ga0182040_1196606323300016387SoilMTDRLAVEQLVRELHAARLAGDLERVCGLYSEDARLRIAGTTDGKPIAIAASGIAEIRPWMSILVKTFRMSQYTMLSLTIDAPRAAAHW
Ga0182037_1014898633300016404SoilMTDRPEIEQLVRELHAARLEGNLERLCALYADEARLRISGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSLTVDVPRAAAHWRVD
Ga0182039_1227637313300016422SoilMTDRQQVEQLVRELHAARLEGNLERLCGLYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTLL
Ga0182038_1092646013300016445SoilMTDRQQVEQLVRELHAARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSI
Ga0182038_1100304423300016445SoilLTDRPEIERLVRELHAARLEGSLERLCALYAEEARLRITGSTDGKPIAIAAIGLAEIRPWLSIPVKTFRLTQYTILSLTIDAPRAAAHWRVDIHSK
Ga0187809_1028800623300017937Freshwater SedimentMTDRQQIEQLVRELHTARVEGNLERLCALYGDEARLRIAGSTDGKPIAIAAIGLAEIRPWLSILVKTFRLTDYTILSLTVEV
Ga0187779_1130353423300017959Tropical PeatlandMTERQQVERLVKELHAARVDGDLERLCRVFAPDARLRIAGASEGKPIAIDASRLNRIRPWLSILVRTFRMSGYQL
Ga0187781_1017797133300017972Tropical PeatlandMADRLQVEQLVRELHAARLEGDLERLCALYSPEAQLRIAGSSDGKPIAIAAIGITEIRPWLSILVKTFRFTQYALHSLTADPPRAAAHWRVDIHS
Ga0187777_1112558313300017974Tropical PeatlandMTDRQQFEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLSQYTILSLSIDIPRAAAHWRVDIHSKITGVV
Ga0187782_1094917013300017975Tropical PeatlandMTDRLQVEQLVRELHASRLDGNLERLCALYSEEARLRIAGTTDGKPIAIAASGIAEIRPWLSILVKTFRLSQYMILSLTVDGS
Ga0187855_1078963113300018038PeatlandMTDRSQVEQLVRELHAARLEGDLKRLCAVFAPDARLRIAGSSDGKPIAIDASRITRISPWLSILVKTFRLSRYQLLSLTIE
Ga0187765_1014610413300018060Tropical PeatlandMTDRPQVEQLVRELHAARLDGNLERLCGLYSEEARLRIAGTTDGKPIAIAASGIAEIRPWLSILVKTFRLTQYMILSLTVDVPRAAAHWRVDIHSKITGVVVPTELIDLIDVRG
Ga0210399_1138684523300020581SoilMTERSQVEQLIKELHAARVAGDLERLCRVYAPDSRLRIAGSSDGKPIAIDASRISNIRPWLSILVKTFRLSRYELLSLTIEGASASAYWRVDIESKITGICIPTELVDLIEVRNRQIA
Ga0210401_1161299513300020583SoilMTERSQVEQLIKELHAARVAGDLERLCRVYAPDSRLRIAGSSDGKPIAIDASRISNIRPWLSILVKTFRLSRYELLSLTIEGASASAYWRVDIESKITGICIPTELVDLIEVRNRQIASQTEFFVPV
Ga0210388_1026136033300021181SoilMTDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTF
Ga0210388_1157870823300021181SoilMTDRSRVEQLVKELHAARLEGDLERLCAVFAPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKAFRLSRYQLLSLTIEGASAAAHWRVDIESKIT
Ga0213882_1019160223300021362Exposed RockMTDRAQIEQLVRELHAARLEDNLERLCALYSAEARLRIAGSSDGKPIAMAAIGIAEIRPWLSILVKTFRMTQYTILALTVEVPRAAAHWRVDIHSKITGAVVPTELVDL
Ga0210385_1125463713300021402SoilMTDRMQVEQLVRELHAARVDGSLERLCGLYAEDARLRIAGSTDGKPIAIEASGIAEIRPWLSILVKTFRLTQYM
Ga0210397_1030053213300021403SoilMTDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLSRYEL
Ga0210383_1084807313300021407SoilMTDRSQVEQLVKELHAARLKGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRVARIRPWLSILV
Ga0210402_1020076033300021478SoilMTDRLQIEQLVRELHVARLEGNLERLCALYAEEARLRIAGSTDGKPIAISAIGIAEIRPWLSILVKTFRLTQYTLLSLSIDVPRAA
Ga0210402_1076777223300021478SoilMTERSQIEQLVKELHAARLAGDLERLCRVFAPDARLRIAGSSDGKPIAIDASRISNIRPWLSILVKTF
Ga0126371_1292464723300021560Tropical Forest SoilMTDRLAVEQLVRELHAARLAGDLERVCGLYSADARLRIAGTTDGKPIAIAASGIAEIRPWMSILVKTFRMGQYTMLSLTVDAPRAAAHWRVDIL
Ga0242654_1027825423300022726SoilMTDRLQIEQLVRELHVARLEGNLERLCALYAEEARLRIAGSTDGKPIAISAIGIAEIRPWLSILVKTFRLTQYTLLS
Ga0207642_1114041823300025899Miscanthus RhizosphereMSDCSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIE
Ga0207687_1093448713300025927Miscanthus RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTSAAAHWRVDIE
Ga0207700_1170797223300025928Corn, Switchgrass And Miscanthus RhizosphereMTDRQQFEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSI
Ga0207711_1100992923300025941Switchgrass RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTSAAAHWRVDI
Ga0207667_1203293313300025949Corn RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTSAAAHWRVDIESKITGIVIPTELVDLIE
Ga0207648_1075646613300026089Miscanthus RhizosphereMSDRSQVEQLVKELHAARLAGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLRGYELLSLTIEGTSAAAHWRVDIESKITGIVIPTELV
Ga0209688_105171123300026305SoilMSGRRQVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSEGKPIAIAAAGISQIRPWLGILVKTF
Ga0209057_115739813300026342SoilMSGRRQVEELLQGLHAARIEGSLERVCACFSPDARLRIAGSSDGKPIAIAAAGISQIRPWLGILVKTFRLSGYELRSLTIEGTRAAAHW
Ga0179587_1111344513300026557Vadose Zone SoilMTDRLQVEQLLRELHAARLDGDLERLCKLFSPDARLRIAGSSDGKPIAIAASGIGQIRSWLSMLIKTFRLSRYRLLSLTVDGSRA
Ga0209006_1005773613300027908Forest SoilMTDRSRVEQLVKELHAARLEGDLERLCAVFAPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKAFRLSRYQLLSLTIEGASAA
Ga0311340_1045852223300029943PalsaMTDRLQIEQLVRELHAARLDGNLERLCALYADEARLRIAGSTDGKPIAIAASGLSEIRPWLSILVKTFRLSQYMILSLNVDVPRAAAHWRVDIHSKITG
Ga0302305_119676813300030046PalsaMTDRSQVEQLVKELHAARMEGHLERLCAVFAPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLSRYQLLSMT
Ga0311353_1049715923300030399PalsaMTDRSQVEQLVKELHAARMEGHLERLCAVFAPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLSRYQLLSMTIEGAAAAAH
Ga0311357_1154955323300030524PalsaMTDRLQVEQLVRELHAARIDGNLERLCRVYSDEARLRIAGSTDGKPIAIEATGIGEIRPWLSIL
Ga0302313_1015376313300030693PalsaMTDRSQVEQLVKELHAARMEGHLERLCAVFAPDARLRIAGSSDGKPIAIDASRIARIRPWLSILVKTFRLSRYQLLSMTIEGAAAAAPRRGDIESKITGIIVPTELVDLIEVRNGQISSQIEFFVPC
Ga0265760_1017449013300031090SoilMTDRMQVEQLVRELHAARLDGNLDRLCRLYAEEARLRIAGSTDGKPIAIAASGITEIRPWLSILVRTFRLSQYTILS
Ga0170824_10845840213300031231Forest SoilMTDRLQIEQLVRELHVARLEGNLERLCALYADEARLRIAGSTDGKPIAISAIGIAEIRPWLSILVKTFRLTQYTLLSLSIDVPRAAAHWRVDIHSKITGVVIPTELVDLID
Ga0318534_1024259523300031544SoilMTDRLQIEQLVRELHTARLEGNLERLCALYAEEARLRIAGSTDGKPIAIAATGIAEIRPWLSILVKTFRLTQYTILS
Ga0318528_1058717513300031561SoilMTDRPEIEQLVRELHAARLEGNLERLCALYADEARLRISGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSLSVDAPR
Ga0318573_1014658713300031564SoilMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEVRPWLSILVKTFRLTQYTLLSLSIDVPRAAAHWRVDI
Ga0318555_1007784413300031640SoilMTDRQQVEQLVRELHAARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTI
Ga0318555_1049031113300031640SoilMTERLQVEQLVRELHAARLEGNLARLCALYADEARLRIAGSTVGKPIAIAATGIEEIRPWLSILVKTFRLSEYTILSLAVDVPRAAAHW
Ga0318574_1035193513300031680SoilMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEVRPWLSI
Ga0318560_1038134213300031682SoilLTDRPEIERLVRELHAARLEGSLERLCALYAEEARLRITGSTDGKPIAIAAIGLAEIRPWLSILVKTFRLTQYTILSLTIDAPRAAAH
Ga0318496_1021469423300031713SoilMTDRAEIERLVRELHAARVEGNLERLCALYAEEARLRIAGSTDGKPIALAAIGLAEIRPWLSILVKTFRLTQYTILSLTIDAPRAAAHWRVDIHSK
Ga0306917_1026082633300031719SoilMTDRLRFEQLVRELHAARLEGDLERLCVLYADDARLRIAGSTDGKPIAIAAAGIAEIRPWLSILVKTFRLTQYTILS
Ga0318493_1082771813300031723SoilMTDRQQVEQLVRELHAARLEGNLERLCGLYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLAV
Ga0318501_1033647923300031736SoilMTDRPEIEQLVRELHAARLEGNLERLCALYADEARLRISGSTDGTPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSLSVDAPRAAAHWRVDIHSK
Ga0306918_1078468613300031744SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLSVDVPRAAAHWRVDIHSKITGVVVPT
Ga0306918_1147352723300031744SoilMTDRLQIERLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLT
Ga0318492_1031026123300031748SoilMTDRLAVEQLVRELHAARLAGDLERVCGLYSEDARLRIAGTTDGKPIAIAASGIAEIRPWMSI
Ga0307477_1031199713300031753Hardwood Forest SoilMTERHQVEELVRELHAARLDGGLERLCACFSADARLRIAGSSDGKPIAIAASGISQIRPWLSILVKTFRLSGYELLSLTIEGTRAAAQWRVDIHSKITGAMVST
Ga0307477_1050999423300031753Hardwood Forest SoilMTDRPEIEQLVRELHAARLEGDLERLCALYADEARLRIAGSTDGKPIAIGAIGIAEIRPWLSILVKTFR
Ga0307475_1058845423300031754Hardwood Forest SoilMTDRLQIEQLVHELHMARLENDLERLCRLYSPEARLRIAGSTDGKPIAIAAIGLAEIRPWLSILVKTFRLTHYTLLALSIDVPRAAAHWRVDIHSKITGA
Ga0307475_1118928123300031754Hardwood Forest SoilMTDRLQIEQLVRELHAARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLSIDVPRAAAHWRVDIHSKITG
Ga0318535_1035383823300031764SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLSV
Ga0318554_10001559103300031765SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLSVDVP
Ga0318554_1072943923300031765SoilMTDRLQIERLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTIL
Ga0318509_1064030223300031768SoilMTDRLQIERLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLTIDAPR
Ga0318521_1042078713300031770SoilMTDRLRFEQLVRELHAARLEGDLERLCVLYADDARLRIAGSTDGKPIAIAAAGIAEIRPWLSILVKTFRLTQYTILSLSIDVPRAAAHW
Ga0318521_1093515423300031770SoilMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGRPIAIAAIGIAEVRPWLSILVKTFRLTQYTLLSLSIDVPRAAAHWRVDIHSKITGVVI
Ga0318547_1108638323300031781SoilMTDRLAVEQLVRELHAARLAGDLERVCGLYSEDARLRIAGTTDGKPIAIAASGIAEIRPWMSILVKTFRMSQYTMLSLTIDAPRAAAHWRV
Ga0318523_1047687523300031798SoilMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGRPIAIAAIGIAEVRPWLSILVKTFRLTQYTL
Ga0318565_1053598523300031799SoilLTDRPEIERLVRELHAARLEGSLERLCALYAEEARLRITGSTDGKPIAIAAIGLAEIRPWLSILVK
Ga0318497_1082110213300031805SoilMSDRQQIEQLVRELHTARVEGDLDRLCALYAQESRLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLSHY
Ga0318567_1011736613300031821SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTI
Ga0318567_1052072713300031821SoilMTDRLQIERLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLTIDAPRAAAHWRVDIHSKVTGVVVPT
Ga0318567_1083751523300031821SoilMTDRQQVEQLVRELHAARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRL
Ga0307478_1177720723300031823Hardwood Forest SoilMTDRLQVEQLVRELHAARVEGNLERLCGLYAAEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFKLTQYTILSLAVDGPRAAAHW
Ga0318517_1000917943300031835SoilMTDRLQIEQLVRELHMARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEVRPWLSILVKTFRLTQY
Ga0318511_1011496213300031845SoilMTDRQQVEQLVRELHAARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGLAEIRPWLSILVKTFRLTQYTILSLAVDVPRAAAHWRVDIH
Ga0318512_1017747923300031846SoilMTDRQQVEQLVRELHAARLEGNLERLCGLYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLAVDVPRAAAHWRVDIHSKITG
Ga0318512_1027511523300031846SoilMTDRLRFEQLVRELHAARLEGDLERLCVLYADDARLRIAGSTDGKPIAIAAAGIAEIRPWLSILVKTFRLTQYT
Ga0318512_1065114223300031846SoilMTDRLQVEQLVRELHAARLEGNFERLCALYADEARLRIAGSTVGKPIAIAATGIEEIRPWLSILVKTFRLSEYTILS
Ga0318544_1015706613300031880SoilMTDRQQVEQLVRELHAARLEGNLERLCGLYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLAVDVPRAAAHWRVDIHSKITGVV
Ga0318551_1011244513300031896SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSL
Ga0318551_1063575213300031896SoilMTDRQQVEQLVRELHAARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQ
Ga0318551_1090345323300031896SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVK
Ga0318520_1093799023300031897SoilMTDRQQVEQLVRELHAARLEGNLERLCGLYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLV
Ga0306923_1127756123300031910SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSLTV
Ga0306923_1198963713300031910SoilMTDRAEIERLVRELHAARVEGNLERLCALYAEEARLRIAGSTDGKPIALAAIGLAEIRPWLSILVKTFRLTQYTILSLTIDAPRAAAHWRVDIHSKI
Ga0306921_1035098113300031912SoilMTDRAEIERLVRELHAARVEGNLERLCALYAEEARLRIAGSTDGKPIALAAIGLAEIRPWLSILVKTFR
Ga0306921_1163805523300031912SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSLTVDSPRAAAHWRVDIHSKI
Ga0310912_1096354013300031941SoilMTDRAEIERLVRELHAARVEGNLERLCALYAEEARLRIAGSTDGKPIALAAIGLAEIRPWLSILVKTFRLT
Ga0310916_1145377713300031942SoilMTDRLQVEQLVRELHAARLEGNLARLCALYADEARLRIAGSTVGKPIAIAATGIEEIRPWLSILVKTFR
Ga0318562_1035783613300032008SoilMTERLQVEQLVRELHAARLEGNLARLCALYADEARLRIAGSTDGKPIAIAATGIEEIRPWLSILVKTFRLSEYTILSLAVDVPRA
Ga0318562_1089804723300032008SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTILSLSVDVPRAAAHWRVDIHSKITGVVV
Ga0318563_1020322013300032009SoilLTDRPEIERLVRELHAARLEGSLERLCALYAEEARLRITGSTDGKPIAIAAIGLAEIRPWLSILVKTFRLTQYTILSLTIDAPRAAAHWRVDIHSKVTGVVVPTELV
Ga0318563_1028997013300032009SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSL
Ga0318563_1049331023300032009SoilMTDRLQVEQLVRELHAARLEGNLERLCGLYADEARLRIAGSTDGKPIAMAATGIAEIRPWLTLLVKTFRLTQYTI
Ga0318569_1026398723300032010SoilLTDRPEIERLVRELHAARLEGSLERLCALYAEEARLRITGSTDGKPIAIAAIGLAEIRPWLSILVKTFRLTQYTILSLT
Ga0310911_1017402523300032035SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYTIL
Ga0318545_1033560913300032042SoilMTDRQQVEQLVRELHAARLEGDLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILV
Ga0318532_1010720213300032051SoilMTDRQQVEQLVRELHAARLEGNLERLCGLYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVKTFRLTQYT
Ga0318570_1041207523300032054SoilLTDRPEIERLVRELHAARLEGSLERLCALYAEEARLRITGSTDGKPIAIAAIGLAEIRPWLSILVKTFR
Ga0318533_1048439423300032059SoilMTDRPEIEQLVRELHAARLEGNLERLCALYADEARLRISGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSL
Ga0318504_1027687013300032063SoilMTDRLQIEQLVRELHTARLDGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKTFRLTQYTILSLTVDVPRAAAHWRVDIHSKITGVVVPTELV
Ga0318525_1032978023300032089SoilLTDRPEIERLVRELHAARLEGSLERLCALYAEEARLRITGSTDGKPIAIAAIGLAEIRPWLSILVKTFRLTQYT
Ga0318577_1039301713300032091SoilMTDRLRFEQLVRELHAARLEGDLERLCVLYADDARLRIAGSTDGKPIAIAAAGIAEIRPWLSILVKTFRLTQYTILSLSIDVPRAAAHWRVDIHSK
Ga0318540_1000527813300032094SoilMTDRLRFEQLVRELHAARLEGDLERLCVLYADDARLRIAGSTDGKPIAIAAAGIAEIRPWLSILVKTFRLTQYTILSLSIDVPRAA
Ga0306920_10032092613300032261SoilMTDRLQIERLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSVLVK
Ga0306920_10049592013300032261SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSILVKT
Ga0306920_10121365113300032261SoilMSDRLQVEQLVRELHVARLEGDLERLCALYADEARLRIAGSTDGKPVAIAASGIAEIRPWLSILVKTFRLTQYTILSLTIDVPRTAAHWRVDIH
Ga0335078_1244769113300032805SoilMTDRSQVEQLVKELHAARLAGDLERLCRLYAQDARLRIAGSSDGKAIAIDASRIVQIRPWLAILIKTFRLSHYCLMSLTIDDGAAAAHWQVDIESKVTGISTA
Ga0335077_1218781323300033158SoilMTDRLQVEQLVRELHAARLDGNLERLCGLYSEEARLRIAGTTDGKPIAIAASGIAEIRPWLSILVKTFKLTQYMILSLTVDVPRAAAHWRVDIHSKITGVVVPTE
Ga0318519_1006328933300033290SoilMTDRLQIEQLVRELHTARLEGNLERLCALYADEARLRIAGSTDGKPIAIAAIGIAEIRPWLSV
Ga0316624_1060259623300033486SoilMGMTDRSQVEQLVKELHAARLEGDLERLCRVFSPDARLRIAGSSDGKPIAIDASRIARIRPWLSIL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.