Metagenome Family F047217

Basic Information
Family ID	F047217
Family Type	Metagenome
Number of Sequences	150
Average Sequence Length	44 residues
Representative Sequence	QGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV
Number of Associated Samples	127
Number of Associated Scaffolds	150

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	84.00 %
Associated GOLD sequencing projects	120
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (96.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.667 % of family members)
Environment Ontology (ENVO)	Unclassified (25.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. 1A5_c1_01344240 2A5_c1_00206260 3E41_08574890 4Ga0062593_1012336302 5Ga0062593_1034955581 6Ga0062589_1002867061 7Ga0066674_101229072 8Ga0066684_104696322 9Ga0066678_104701713 10Ga0066676_108039202 11Ga0070691_104132211 12Ga0070703_104978791 13Ga0070700_1002892343 14Ga0070700_1011308442 15Ga0066682_100382085 16Ga0066681_104820691 17Ga0066687_100354021 18Ga0070663_1012501412 19Ga0070686_1000395494 20Ga0070686_1006208391 21Ga0070693_1010360451 22Ga0070704_1001039634 23Ga0066701_102305771 24Ga0070664_1001664455 25Ga0066693_103080231 26Ga0066703_100223374 27Ga0066705_100979044 28Ga0066694_104045191 29Ga0066706_102482511 30Ga0066706_108190923 31Ga0066706_108190932 32Ga0068866_101764751 33Ga0070712_1011790522 34Ga0070712_1014766621 35Ga0066658_101167944 36Ga0066665_100444891 37Ga0079221_103491832 38Ga0079220_100077521 39Ga0079220_101155442 40Ga0066797_12710162 41Ga0079215_111117112 42Ga0075436_1013305752 43Ga0079219_101802751 44Ga0066710_1005128934 45Ga0066793_100496205 46Ga0066793_101565731 47Ga0105240_122578861 48Ga0105245_104023313 49Ga0066709_1006575801 50Ga0066709_1011874431 51Ga0066709_1017619651 52Ga0066709_1035205271 53Ga0099792_112770762 54Ga0134065_101400081 55Ga0134128_115579901 56Ga0105239_129901562 57Ga0134126_122882511 58Ga0134124_102278153 59Ga0134122_103233692 60Ga0134122_125587771 61Ga0120164_10014931 62Ga0120153_10699291 63Ga0137362_102830141 64Ga0137376_100082541 65Ga0137376_101225305 66Ga0137379_109968761 67Ga0137377_105038841 68Ga0137377_112731101 69Ga0137360_101553241 70Ga0157292_101746632 71Ga0137394_113768412 72Ga0137407_103293441 73Ga0164301_118161551 74Ga0134076_104263961 75Ga0134087_101020313 76Ga0164309_117073692 77Ga0157373_108012351 78Ga0157369_103644953 79Ga0134078_105104952 80Ga0134079_100091431 81Ga0157377_113767372 82Ga0132258_112610153 83Ga0132258_117742423 84Ga0132257_1000465954 85Ga0132257_1003409341 86Ga0132255_1035425771 87Ga0184608_101150871 88Ga0184620_102163731 89Ga0184638_11277661 90Ga0184617_10136064 91Ga0184617_11664222 92Ga0184609_101094571 93Ga0066662_100800266 94Ga0190274_133078832 95Ga0066669_110204591 96Ga0193744_10079894 97Ga0193722_10190374 98Ga0193723_10973491 99Ga0193707_11120172 100Ga0193713_10353732 101Ga0193725_10027727 102Ga0193747_10206251 103Ga0193727_10351014 104Ga0193721_10482523 105Ga0193745_10338391 106Ga0193724_10069996 107Ga0210378_101009611 108Ga0210381_100811413 109Ga0193719_100385081 110Ga0222621_10280401 111Ga0222621_10715641 112Ga0193698_10137263 113Ga0224452_11143631 114Ga0222622_100022731 115Ga0222622_104549223 116Ga0247677_10716642 117Ga0207645_106094591 118Ga0207684_100562201 119Ga0207707_102967422 120Ga0207693_114214231 121Ga0207662_103469622 122Ga0207644_101653391 123Ga0207665_100685835 124Ga0207667_107903361 125Ga0207678_103505062 126Ga0207708_101287061 127Ga0207708_105080473 128Ga0207698_119558611 129Ga0209265_12305982 130Ga0209153_10159511 131Ga0209686_11051733 132Ga0209472_10343573 133Ga0209267_11708031 134Ga0209378_12144562 135Ga0209161_104509302 136Ga0209488_101790701 137Ga0307303_101567972 138Ga0307307_101517032 139Ga0307280_100729422 140Ga0307284_101115643 141Ga0307292_101288732 142Ga0307296_103832913 143Ga0307310_101017071 144Ga0307300_100508181 145Ga0307308_100085705 146Ga0307308_100851371 147Ga0307308_104455061 148Ga0310887_111475561 149Ga0307469_110827111 150Ga0370484_0009107_5_157
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. 1A5_c1_01344240 2A5_c1_00206260 3Ga0062589_1002867061 4Ga0066681_104820691 5Ga0070704_1001039634 6Ga0070712_1014766621 7Ga0066709_1006575801 8Ga0137362_102830141 9Ga0137377_112731101 10Ga0137360_101553241 11Ga0193727_10351014 12Ga0222622_100022731 13Ga0307307_101517032
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46 1Ga0134065_101400081 2A5_c1_00206260 3Ga0062593_1012336302 4Ga0062593_1034955581 5Ga0062589_1002867061 6Ga0070686_1000395494 7Ga0070693_1010360451 8Ga0070704_1001039634 9Ga0070712_1011790522 10Ga0075436_1013305752 11Ga0066709_1006575801 12Ga0099792_112770762 13Ga0137362_102830141 14Ga0137377_105038841 15Ga0137377_112731101 16Ga0137360_101553241 17Ga0137394_113768412 18Ga0164309_117073692 19Ga0157377_113767372 20Ga0184608_101150871 21Ga0193713_10353732 22Ga0193725_10027727 23Ga0210378_101009611 24Ga0222621_10715641 25Ga0247677_10716642 26Ga0207684_100562201 27Ga0209488_101790701 28Ga0307307_101517032
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 32.43% Coil/Unstructured: 67.57%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Pfam ID	Name	% Frequency in 150 Family Scaffolds
PF03358	FMN_red	10.00
PF07963	N_methyl	10.00
PF13544	Obsolete Pfam Family	4.67
PF01063	Aminotran_4	3.33
PF04542	Sigma70_r2	2.67
PF11306	DUF3108	2.67
PF13505	OMP_b-brl	2.00
PF16313	DUF4953	2.00
PF14031	D-ser_dehydrat	2.00
PF08544	GHMP_kinases_C	2.00

COG ID	Name	Functional Category	% Frequency in 150 Family Scaffolds
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	6.67
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.67
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	2.67
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.67
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	2.67
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	0.67
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	0.67
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	0.67
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.67
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	0.67

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.67 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.67 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.67 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.67 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	50.00 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	50.00 %
Unclassified	root	N/A	3.33 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.67 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	4.00 %
Unclassified	root	N/A	3.33 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	28.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.67 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	4.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.00 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.67 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.00 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.67 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.00 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.67 %
Unclassified	root	N/A	3.33 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.67 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.67 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.00 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.67 %
Unclassified	root	N/A	3.33 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908044\|A5_c1_ConsensusfromContig59743	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
2124908044\|A5_c1_ConsensusfromContig63197	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1146	Open in IMG/M
2170459005\|F1BAP7Q01BO0P4	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300004114\|Ga0062593_101233630	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	787	Open in IMG/M
3300004114\|Ga0062593_103495558	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	504	Open in IMG/M
3300004156\|Ga0062589_100286706	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1262	Open in IMG/M
3300005166\|Ga0066674_10122907	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300005179\|Ga0066684_10469632	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300005181\|Ga0066678_10470171	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	836	Open in IMG/M
3300005186\|Ga0066676_10803920	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M

Showing 1 to 10 of 150 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.67%
Host-Associated	Host-Associated	13.33%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.67%
Plants	Host-Associated → Plants	13.33%
Terrestrial	Environmental → Terrestrial	78.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	1.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.00%
Sediment	Environmental → Aquatic → Sediment	7.33%
Soil	Environmental → Terrestrial → Soil	78.00%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.00%
Loam	Environmental → Terrestrial → Soil → Loam	12.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.67%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.67%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.33%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.33%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.67%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.33%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.33%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.67%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.67%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.33%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.33%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 127 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A5_c1_01344240	2124908044	Soil	SQNVTVVIVNAVGPPASWSGTATHSQSAKTCTMVNGVIACV
A5_c1_00206260	2124908044	Soil	APLQGFSPSQNVTVVIVNVAGPPGSWSGTATHSQSAKVCDMTNGVITCV
E41_08574890	2170459005	Grass Soil	NVTVVIVNVLGPPAVWSGTATHSQSAKVCTMANGVIACV
Ga0062593_1012336302	3300004114	Soil	PLQGFSPSQNVTVIVTAVAGPPPSWSATASHSQTAKTCAMTNGVITCT*
Ga0062593_1034955581	3300004114	Soil	PLQGFTPSQNVTIVATVVVGPPPSWSATATHSQSAKTCDMTNGVLTCV*
Ga0062589_1002867061	3300004156	Soil	QNVTVTVTAVAGPPPDWSATATHTQTAKVCDMTAGVITCT*
Ga0066674_101229072	3300005166	Soil	AAPLQGFSPSQNVTVVVTAVAGPPPSWSATATHTQSAKVCDMTNGVITCA*
Ga0066684_104696322	3300005179	Soil	AAPLQGFTPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCSMVNGVITCV*
Ga0066678_104701713	3300005181	Soil	QNVTIVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCA*
Ga0066676_108039202	3300005186	Soil	SQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV*
Ga0070691_104132211	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	NVTVVVTNVAGPPPSWNATATHSQSAKTCAMTNGVITCT*
Ga0070703_104978791	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	SQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCA*
Ga0070700_1002892343	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	QGFSPSQNVTVVVTAVAGPPPSWSATATHTQTAKTCDMTNGVITCT*
Ga0070700_1011308442	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	PLQGFSPSQNVTVVVTNVAGPPPSWSATATHTQSAKTCAMTNGVITCT*
Ga0066682_100382085	3300005450	Soil	SQNVTVVVTNVAGPPPSWSATATHSQSAKVCDMTNGVITCI*
Ga0066681_104820691	3300005451	Soil	ASPVQGFTPSQNVTIVVTAVAGPPPSWSATATHSQSAKTCQMVNGVITCT*
Ga0066687_100354021	3300005454	Soil	AAPLQGFTPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCA*
Ga0070663_1012501412	3300005455	Corn Rhizosphere	QGFSPSQNVTVVVTNVAGPPPSWSATATHTQSAKTCAMTNGVITCT*
Ga0070686_1000395494	3300005544	Switchgrass Rhizosphere	TSPVQGFTPSQNVTVTVTAVAGPPPSWDATATHTQSAKTCAMTAGVITCT*
Ga0070686_1006208391	3300005544	Switchgrass Rhizosphere	PLQGFTPSQNVTVTVNSTAGPPPSWDATATHTQSAKTCAMTNGVITCT*
Ga0070693_1010360451	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	TSAAPVQGFTPSQNVTIVATAVAGPPPSWSGTATHSQSAKTCAMTNGVITCT*
Ga0070704_1001039634	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	NGFSTSQNVTITATADPGPPPDWSATATHSQSAKSCTMATGVITCTP*
Ga0066701_102305771	3300005552	Soil	AAPLQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKVCDMTNGVITCI*
Ga0070664_1001664455	3300005564	Corn Rhizosphere	FSPSQNVTVVVTGVAGPPPSWSATATHTQTAKVCDMTNGVITCT*
Ga0066693_103080231	3300005566	Soil	FSPSQNVTVVVTNVAGPPPSWSATATHTQSAKTCQMVNGVITCA*
Ga0066703_100223374	3300005568	Soil	FSPSQNVTVVVTAVAGPPPSWSATATHTQSAKTCQMLNGVITCA*
Ga0066705_100979044	3300005569	Soil	TPLQGFTPSQNVTVTVTAVAGPPPSWSATATHSQSAKVCDMTNGVITCV*
Ga0066694_104045191	3300005574	Soil	NVTVVVTAVAGPPPSWSATATHTQTAKTCDMTNGVITCT*
Ga0066706_102482511	3300005598	Soil	PLQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKVCSMTNGVITCV*
Ga0066706_108190923	3300005598	Soil	LQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKVCSMVNGVITCV*
Ga0066706_108190932	3300005598	Soil	LQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKVCSMINGVITCV*
Ga0068866_101764751	3300005718	Miscanthus Rhizosphere	AAPLQGFSPSQNVTVVVTAVAGPPPSWSATATHTQTAKTCDMTNGVITCT*
Ga0070712_1011790522	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LQGFSPSQNVTVVITNVVGPPPSWSGTATHSQSAKTCTMINGVIACA*
Ga0070712_1014766621	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV*
Ga0066658_101167944	3300006794	Soil	FTPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCA*
Ga0066665_100444891	3300006796	Soil	GFSPSQNVTVVVTAVAGPPPSWSATATHTQSAKVCDMTNGVITCA*
Ga0079221_103491832	3300006804	Agricultural Soil	AAPLQGFTPSQNVTIVVTAVAGPPPSWSATATHSQSAKTCDMTNGVITCT*
Ga0079220_100077521	3300006806	Agricultural Soil	AAPLQGFTPSQNVTIVVTSVAGPPPSWSATATHSQSAKTCDMTNGVITCT*
Ga0079220_101155442	3300006806	Agricultural Soil	APLQGFTPSQNVTIVVTAVAGPPPSWSATATHSQSAKTCAMVNGVITCT*
Ga0066797_12710162	3300006864	Soil	IVNLPGPPASWSGTATHSQSAKVCDMTNGVITCV*
Ga0079215_111117112	3300006894	Agricultural Soil	VVVNLAGPPPSWSATATHSQSAKTCDMTNGVITCV*
Ga0075436_1013305752	3300006914	Populus Rhizosphere	PLQGFTPSQNVTIVVTGVAGPPPSWSATATHSQSAKTCDMTGGVITCTP*
Ga0079219_101802751	3300006954	Agricultural Soil	AAPLQGFTPSQNVTIVVTAVAGPPPSWSATATHSQSAKTCAMVNGVITCT*
Ga0066710_1005128934	3300009012	Grasslands Soil	SQNVTVVVTNVAGPPPSWSATATHSQSAKVCDMTNGVITCI
Ga0066793_100496205	3300009029	Prmafrost Soil	VVIVDVAGPPGSGSGTATHSQSAKVCDMTNGVITCV*
Ga0066793_101565731	3300009029	Prmafrost Soil	QGFTPSQNVTVVIVNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV*
Ga0105240_122578861	3300009093	Corn Rhizosphere	AAPLQGFSPSQNVTVVVTGVAGPPPSWSATATHTQTAKVCDMTNGVITCT*
Ga0105245_104023313	3300009098	Miscanthus Rhizosphere	IVTAVAGPPPSWSATASHTQTAKVCDMTNGVITCT*
Ga0066709_1006575801	3300009137	Grasslands Soil	QRISPSQNGTVVVTHVAGPPPSWTATATHSQSAKVCSMINGLITCV*
Ga0066709_1011874431	3300009137	Grasslands Soil	AAPLQGFSPSQNVTVVVVNVAGPPPSWRATATHSQSAKSCDMSNGVITCV*
Ga0066709_1017619651	3300009137	Grasslands Soil	NVTVVVTNVAGPPPSWSATATHSQSAKVCDMTNGVITCI*
Ga0066709_1035205271	3300009137	Grasslands Soil	SPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCSMVNGVITCV*
Ga0099792_112770762	3300009143	Vadose Zone Soil	SAAPLQGFSPSQNVTVVVNNVAGPPPSWDATATHSQSAKVCTMTNGVIVCV*
Ga0134065_101400081	3300010326	Grasslands Soil	QGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV*
Ga0134128_115579901	3300010373	Terrestrial Soil	PLQGFSPSQNVTVVITNLAGPPPSWQGTATHSQSAKVCDMTNGVITCV*
Ga0105239_129901562	3300010375	Corn Rhizosphere	AAAPLQGFSPSQNVTVVVTAVAGPPPSWSATATHTQTAKTCDMTNGVITCT*
Ga0134126_122882511	3300010396	Terrestrial Soil	AAPLQGFSPSQNVTVVVVNVAGPPPSWSATATHSQSAKTCDMTNGVITCV*
Ga0134124_102278153	3300010397	Terrestrial Soil	APLQGFTPSQNVTIVATNVAGPPPSWSGTATHSQSAKTCDMTGGVITCTP*
Ga0134122_103233692	3300010400	Terrestrial Soil	SAAPLQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV*
Ga0134122_125587771	3300010400	Terrestrial Soil	TVTAVAGPPPSWDATATHTQSAKTCAMTAGVITCT*
Ga0120164_10014931	3300011987	Permafrost	VITNLPGPPASWSGTATHSQSAKVCDMTNGVITCV*
Ga0120153_10699291	3300011991	Permafrost	PSQNVTVVITNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV*
Ga0137362_102830141	3300012205	Vadose Zone Soil	IIAVTVGGPPPSWSATATHSQSAKVCDMIGGVITCA*
Ga0137376_100082541	3300012208	Vadose Zone Soil	AAPLQGFSPSQNVTVVVVNVAGPPPSWSATATHTQSAKVCDMTNGVITCT*
Ga0137376_101225305	3300012208	Vadose Zone Soil	GFSPSQNVTVVVTAVAGPPPSWSATANHTQSAKTCQMVNGVITCA*
Ga0137379_109968761	3300012209	Vadose Zone Soil	FSPSQNVTVVVTNVAGPPPSWSATATHSQSAKVCDMTNGVITCA*
Ga0137377_105038841	3300012211	Vadose Zone Soil	QNVTVVVVNVAGPPPSWSATATHTQSAKVCTMINGVITCV*
Ga0137377_112731101	3300012211	Vadose Zone Soil	GFSPSQNVTVTITNDPGPPPTWSGSATHSQSAKVCSMSNGVITCV*
Ga0137360_101553241	3300012361	Vadose Zone Soil	NVTIVAVTVAGPPPGWNATATHSLTARTCDMTNGVITCT*
Ga0157292_101746632	3300012900	Soil	VVTGVAGPPPSWSATATHTQTAKVCDMTNGVITCT*
Ga0137394_113768412	3300012922	Vadose Zone Soil	AAPLQGFIPSQNVTIVAAIAAGPPPSWSATATHAQSAKVCDMTGGVITCA*
Ga0137407_103293441	3300012930	Vadose Zone Soil	LQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCSMVNGVITCV*
Ga0164301_118161551	3300012960	Soil	NVTIVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCA*
Ga0134076_104263961	3300012976	Grasslands Soil	TAAPLQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCSMVNGVITCV*
Ga0134087_101020313	3300012977	Grasslands Soil	IVAVNVAGPPPSWSANATHSQSAKVCDMTNGVITCA*
Ga0164309_117073692	3300012984	Soil	LQGFTPSQNVTIVVTGVTGPPPDWSAAATHSQSAKTCSMAAGVITCT*
Ga0157373_108012351	3300013100	Corn Rhizosphere	LQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAQTCAMTNGVISCA*
Ga0157369_103644953	3300013105	Corn Rhizosphere	FSPSQNVTVVITNLAGPPPSWQGTATHSQSAKVCDMTNGVITCV*
Ga0134078_105104952	3300014157	Grasslands Soil	VTVVVTNVAGPPPSWSATATHTQSPKTCDMTNGVITCT*
Ga0134079_100091431	3300014166	Grasslands Soil	MAAPLQGFTPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV*
Ga0157377_113767372	3300014745	Miscanthus Rhizosphere	APLQGFSPSQNVTVVVTGVAGPPPSWSATATHTQTAKVCDMTNGVITCT*
Ga0132258_112610153	3300015371	Arabidopsis Rhizosphere	VTVTVTAVAGPPPSWDATATHTQSAKTCAMTAGVITCT*
Ga0132258_117742423	3300015371	Arabidopsis Rhizosphere	PLQGFSPSQNVTVVVTAVAGPPPSWSATATHTQTAKTCDMTNGVITCT*
Ga0132257_1000465954	3300015373	Arabidopsis Rhizosphere	PLQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV*
Ga0132257_1003409341	3300015373	Arabidopsis Rhizosphere	VTVTAVAGPPPSWDATATHTQSAKTCAMTAGVITCT*
Ga0132255_1035425771	3300015374	Arabidopsis Rhizosphere	VTVVVTNVAGPPPSWSATATHTQSAKTCAMTNGVITCT*
Ga0184608_101150871	3300018028	Groundwater Sediment	AAPLQGFSPSQNVTVVVVSVAGPPPSWSATANHSQSAKVCSMINGVITCV
Ga0184620_102163731	3300018051	Groundwater Sediment	SPSQNVTVVITNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0184638_11277661	3300018052	Groundwater Sediment	FSPSQNVTVIVTAVAGPPPSWSATASHTQTAKLCDMTNGVITCT
Ga0184617_10136064	3300018066	Groundwater Sediment	AAPLQGFTPSQNVTIVAVNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0184617_11664222	3300018066	Groundwater Sediment	QGFSPSQNVTVVVVNVAGPPPSWSATATHAQSAKVCDMTNGVITCV
Ga0184609_101094571	3300018076	Groundwater Sediment	VIVTAVAGPPPSWSATASHTQTAKLCDMTNGVITCT
Ga0066662_100800266	3300018468	Grasslands Soil	PLQGFTPSQNVTIVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCA
Ga0190274_133078832	3300018476	Soil	IVTALAGPPPSWSATASHTQTAKTCDMTNGVITCT
Ga0066669_110204591	3300018482	Grasslands Soil	QGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV
Ga0193744_10079894	3300019874	Soil	SQNVTVVITNLAGPPPSWQGTATHSQSAKVCDMTNGVITCV
Ga0193722_10190374	3300019877	Soil	PSQNVTVVITNLPGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0193723_10973491	3300019879	Soil	LQGFSPSQNVTVVIVNVAGPPPSWSGTATHSQSAKVCSMTNGVIACV
Ga0193707_11120172	3300019881	Soil	NVTVVVVNVAGPPPSWSATATHSQSAKVCSMVNGVITCV
Ga0193713_10353732	3300019882	Soil	SLAPLQGFSPSQNVTVVIVNALGPPASWSGTATHSQSAKVCTMVNGVIACV
Ga0193725_10027727	3300019883	Soil	VIVNVAGPPPSWSGTATHSQSAKTCTMVNGVIACV
Ga0193747_10206251	3300019885	Soil	NVTVVVTNVAGPPPSWSATATHSQSAKVCDMTNGVITCV
Ga0193727_10351014	3300019886	Soil	VVNATVGPPPSWDATATHSQSAKVCTMINGVITCV
Ga0193721_10482523	3300020018	Soil	IVAVNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0193745_10338391	3300020059	Soil	SQNVTVVVTNLPGPPPSWQGTATHSQSAKVCDMTNGVITCV
Ga0193724_10069996	3300020062	Soil	LQGFSPSQNVTVVIVNALGPPASWSGTATHSQSAKVCTMTNGVIACV
Ga0210378_101009611	3300021073	Groundwater Sediment	NVTVIITAVAGPPPSWSATASHTQTAKVCDMTNGVITCT
Ga0210381_100811413	3300021078	Groundwater Sediment	LQGFTPSQNVTIVAVNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0193719_100385081	3300021344	Soil	APLQGFSPSQNVTVVVVNVAGPPPSWSATATHSQSAKVCTMINGVITCV
Ga0222621_10280401	3300021510	Groundwater Sediment	SQNVTVVVNATVGPPPSWDATATHTQSAKVCTMLNGVITCV
Ga0222621_10715641	3300021510	Groundwater Sediment	APLQGFSPSQNVTVVVNATVGPPPSWDATATHTQSAKVCTMINGVITCV
Ga0193698_10137263	3300021968	Soil	QNVTVVIVNVAGPPPSWSGTATHSQSAKVCSMTNGVIACV
Ga0224452_11143631	3300022534	Groundwater Sediment	VAVNVAGPPPSWSATATHSQSAKVCDMTNGVITCV
Ga0222622_100022731	3300022756	Groundwater Sediment	SAAPLQGFSPSQNVTVVVNATVGPPPSWDATATHTQSAKVCTMINGVITCV
Ga0222622_104549223	3300022756	Groundwater Sediment	VTVVIVNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0247677_10716642	3300024245	Soil	APLQGFTPSQNVTVVVTNLPGPPPSWSGTATHTQSAKVCDMTNGVITCV
Ga0207645_106094591	3300025907	Miscanthus Rhizosphere	PLQGFSPSQNVTVVVTNVAGPPPSWNATATHTQSAKTCAMTNGVITCT
Ga0207684_100562201	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LQGFSPSQNVTVVVTAVGGPPPSWSATATHTQSAKTCQMVNGVITCA
Ga0207707_102967422	3300025912	Corn Rhizosphere	QNVTVTVTAVAGPPPSWDATATHTQSAKTCAMTAGVITCT
Ga0207693_114214231	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VTVVVTNVAGPPPSWSATATHSQSAKVCSMINGVITCV
Ga0207662_103469622	3300025918	Switchgrass Rhizosphere	QNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCV
Ga0207644_101653391	3300025931	Switchgrass Rhizosphere	VTVTVTAVAGPPPSWDATATHTQSAKTCAMTAGVITCT
Ga0207665_100685835	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	PSQNVTIVVTAVAGPPPSWSATATHSQSAKTCAMVNGVITCT
Ga0207667_107903361	3300025949	Corn Rhizosphere	NVTIVVTGVAGPPPSWSATATHSQSAKTCDMTGGVITCTP
Ga0207678_103505062	3300026067	Corn Rhizosphere	GFSPSQNVTVVVTNVAGPPPSWSATATHTQSAKTCAMTNGVITCT
Ga0207708_101287061	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	QGFSPSQNVTVVVTAVAGPPPSWSATATHTQTAKVCDMTNGVITCT
Ga0207708_105080473	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	QGFSPSQNVTVVVTAVAGPPPSWSATATHTQTAKTCDMTNGVITCT
Ga0207698_119558611	3300026142	Corn Rhizosphere	VTVVVTSVAGPPPSWSATATHTQSAKVCDMTNGVITCV
Ga0209265_12305982	3300026308	Soil	LQGFTPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCSMVNGVITCV
Ga0209153_10159511	3300026312	Soil	QNVTVVVTAVAGPPPSWSATATHTQTAKTCDMTNGVITCT
Ga0209686_11051733	3300026315	Soil	QNVTIVVTAVAGPPPSWSATATHSQSAKTCDMTNGVITCT
Ga0209472_10343573	3300026323	Soil	APLQGFSPSQNVTVVVTAVAGPPPSWSATATHTQTAKVCDMTNGVITCT
Ga0209267_11708031	3300026331	Soil	NVTVVVTAVAGPPPSWSATATHTQSPKTCQMVNGVITCA
Ga0209378_12144562	3300026528	Soil	PLQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKVCSMVNGVITCV
Ga0209161_104509302	3300026548	Soil	LQGFSPSQNVTVVVTNVAGPPPSWSATATHSQSAKTCDMTNGVITCA
Ga0209488_101790701	3300027903	Vadose Zone Soil	PLQGFTPSQNVTIVAVNVAGPPPSWSATATHSQSAKVCDMTNGVITCV
Ga0307303_101567972	3300028713	Soil	PSQNVTVVVTAVVGPPPSWSATANHTQSAKVCSMINGVITCV
Ga0307307_101517032	3300028718	Soil	VTVVIISIPGPPPSWTGTATHSQSAKTCSMVNGVITCV
Ga0307280_100729422	3300028768	Soil	SLVPLQGFSPSQNVTVVIVNALGPPASWSGTATHSQSAKVCTMVNGVIACV
Ga0307284_101115643	3300028799	Soil	SQNVTIVAVNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0307292_101288732	3300028811	Soil	SAAPLQGFSPSQNVTVVVVNVAGPPPSWSATATHSQSAKVCSMINGVITCV
Ga0307296_103832913	3300028819	Soil	KGFTPSQNVTIVAVNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0307310_101017071	3300028824	Soil	APLQGFSPSQNVTVVIVNVAGPPPSWSGTATHSQSAKVCSMINGVITCV
Ga0307300_100508181	3300028880	Soil	LQGFSPSQNVTVVIVNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV
Ga0307308_100085705	3300028884	Soil	PSQNVTVVIVNVAGPPPSWSGTATHSQSAKVCTMVNGVITCV
Ga0307308_100851371	3300028884	Soil	SVAPLQGFSPSQNVTVVVVNVAGPPPSWSATATHSQSAKVCDMTNGVITCV
Ga0307308_104455061	3300028884	Soil	PSQNVTVVIVNVAGPPPSWSGTATHSQSAKVCSMINGVITCV
Ga0310887_111475561	3300031547	Soil	MASPLQGFTPSQNVTVTVNSTAGPPPSWDATATHTQSAKTCAMTAGVITCT
Ga0307469_110827111	3300031720	Hardwood Forest Soil	AAAPLQGFSPSQNVTVVVTAVAGPPPSWSATANHTQSAKVCSMINGVITCV
Ga0370484_0009107_5_157	3300034125	Untreated Peat Soil	LAPLQGFSPSQNVTVVITNVAGPPPSWSGTATHSQSAKVCDMTNGVITCV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F047217

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences