Metagenome Family F046592

Basic Information
Family ID	F046592
Family Type	Metagenome
Number of Sequences	151
Average Sequence Length	60 residues
Representative Sequence	MNDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG
Number of Associated Samples	104
Number of Associated Scaffolds	151

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	8.20 %
% of genes near scaffold ends (potentially truncated)	43.71 %
% of genes from short scaffolds (< 2000 bps)	62.25 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (53.642 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere (11.258 % of family members)
Environment Ontology (ENVO)	Unclassified (53.642 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (84.768 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114. 1JGI24737J22298_100371211 2JGI24735J21928_101075191 3JGI24738J21930_100893772 4JGI24738J21930_101295111 5JGI24749J21850_10258081 6JGI24742J22300_100881402 7Ga0070676_100172362 8Ga0070690_1000308801 9Ga0070690_1006240752 10Ga0070690_1007963732 11Ga0068869_1000436555 12Ga0070666_100126273 13Ga0070682_1000199941 14Ga0070682_1001746991 15Ga0070682_1017467111 16Ga0068868_10000232515 17Ga0068868_10000431910 18Ga0070689_1001032971 19Ga0070689_1001671961 20Ga0070689_1003719422 21Ga0070687_1003884892 22Ga0070668_1005816982 23Ga0070675_1002526231 24Ga0070673_1007531561 25Ga0070688_1005836741 26Ga0070688_1006789752 27Ga0070667_1000615811 28Ga0070667_1004487301 29Ga0070701_100051811 30Ga0070711_1009998501 31Ga0070705_1000532845 32Ga0070694_1000817313 33Ga0070694_1014832211 34Ga0070678_1006489551 35Ga0070662_1016088291 36Ga0070699_1009007261 37Ga0070679_1012093321 38Ga0068853_1001479593 39Ga0070672_1007099592 40Ga0070686_1002117812 41Ga0070686_1010098652 42Ga0070665_1001657876 43Ga0070704_1000008491 44Ga0070704_1013233491 45Ga0068856_1013094251 46Ga0068852_1000504293 47Ga0068859_1011622011 48Ga0068859_1020435242 49Ga0068864_1016537212 50Ga0068866_100100185 51Ga0068866_103753301 52Ga0068861_1000015087 53Ga0068862_1011269611 54Ga0070716_1000167263 55Ga0070712_1000079388 56Ga0070712_1006092744 57Ga0070712_1015965842 58Ga0068871_1001820183 59Ga0068871_1003133482 60Ga0068865_1006765052 61Ga0068865_1007668292 62Ga0068865_1011172532 63Ga0105244_100527114 64Ga0105240_123482451 65Ga0105247_102845642 66Ga0105243_100771101 67Ga0105248_100219798 68Ga0105238_100971284 69Ga0105249_108726701 70Ga0105249_110307192 71Ga0134125_101138371 72Ga0134125_103707861 73Ga0134126_111440891 74Ga0134126_114689682 75Ga0134126_121005941 76Ga0134122_102283201 77Ga0134122_111225762 78Ga0134121_1000218017 79Ga0134121_102923473 80Ga0157297_104365301 81Ga0164300_102085272 82Ga0164299_116784081 83Ga0164306_103455791 84Ga0164306_115430702 85Ga0164305_102678981 86Ga0157374_106878281 87Ga0157374_107983982 88Ga0157378_104358022 89Ga0157378_123506321 90Ga0163162_104793052 91Ga0163162_133193052 92Ga0157372_100271887 93Ga0157380_101407464 94Ga0157380_104057861 95Ga0157380_110627163 96Ga0173478_102052141 97Ga0132258_103952648 98Ga0132258_104140415 99Ga0132258_110633782 100Ga0132256_1008399401 101Ga0132256_1025319291 102Ga0132257_1034740581 103Ga0132255_1011293521 104Ga0163161_110192391 105Ga0210406_113598541 106Ga0207696_10543142 107Ga0207682_100645353 108Ga0207642_100057034 109Ga0207642_101676751 110Ga0207642_109222821 111Ga0207710_100024141 112Ga0207710_104020281 113Ga0207688_101435643 114Ga0207685_100659682 115Ga0207699_101528261 116Ga0207645_101170291 117Ga0207643_103763031 118Ga0207654_112336712 119Ga0207707_104100591 120Ga0207671_101915341 121Ga0207693_102175663 122Ga0207681_107389521 123Ga0207694_102326813 124Ga0207701_110143492 125Ga0207644_114961521 126Ga0207686_108228721 127Ga0207686_108627032 128Ga0207704_1000186610 129Ga0207704_100063466 130Ga0207704_103249314 131Ga0207691_100147682 132Ga0207711_101705761 133Ga0207711_115508001 134Ga0207712_100253272 135Ga0207712_106799481 136Ga0207712_114357801 137Ga0207677_106050442 138Ga0207708_102766263 139Ga0207648_100463387 140Ga0207675_1010469151 141Ga0207698_104801641 142Ga0209974_103946091 143Ga0268265_104579302 144Ga0268265_106797142 145Ga0268265_119987871 146Ga0307473_108207401 147Ga0310900_107342891 148Ga0310906_102325811 149Ga0310906_108208151 150Ga0307472_1019855782 151Ga0373958_0079660_27_221
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114. 1JGI24737J22298_100371211 2JGI24738J21930_100893772 3JGI24738J21930_101295111 4Ga0070690_1007963732 5Ga0068869_1000436555 6Ga0070662_1016088291 7Ga0070699_1009007261 8Ga0070686_1010098652 9Ga0164299_116784081 10Ga0132256_1025319291
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114. 1JGI24737J22298_100371211 2JGI24738J21930_100893772 3JGI24738J21930_101295111 4Ga0070690_1007963732 5Ga0068869_1000436555 6Ga0070662_1016088291 7Ga0070699_1009007261 8Ga0070686_1010098652 9Ga0164299_116784081 10Ga0132256_1025319291
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.12% β-sheet: 31.25% Coil/Unstructured: 65.62%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 151 Family Scaffolds
PF03055	RPE65	12.58
PF01695	IstB_IS21	7.28
PF03861	ANTAR	6.62
PF08447	PAS_3	5.96
PF03551	PadR	2.65
PF07498	Rho_N	1.99
PF00248	Aldo_ket_red	1.32
PF12680	SnoaL_2	1.32
PF10400	Vir_act_alpha_C	1.32
PF02597	ThiS	0.66

COG ID	Name	Functional Category	% Frequency in 151 Family Scaffolds
COG3670	Carotenoid cleavage dioxygenase or a related enzyme	Secondary metabolites biosynthesis, transport and catabolism [Q]	12.58
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	7.28
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	6.62
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.65
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.65
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.65
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.66
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.66
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.66
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.66

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	46.36 %
Unclassified	root	N/A	53.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	46.36 %
Unclassified	root	N/A	53.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.36 %
Unclassified	root	N/A	53.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.66 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.38 %
Unclassified	root	N/A	53.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42.38 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Unclassified	root	N/A	53.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	41.06 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Unclassified	root	N/A	53.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	33.11 %
Unclassified	root	N/A	53.64 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.66 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %
Actinobacteria bacterium OV450	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium OV450	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	28.48 %
Unclassified	root	N/A	53.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %
Actinobacteria bacterium OV450	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium OV450	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	11.26 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	4.64 %
Unclassified	root	N/A	53.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %
Actinobacteria bacterium OV450	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium OV450	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Mycobacterium angelicum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium angelicum	0.66 %
Mycobacterium simiae complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium simiae complex	0.66 %
Mycolicibacterium moriokaense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	0.66 %
Mycolicibacterium smegmatis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis	0.66 %
Unclassified	root	N/A	53.64 %
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	3.97 %
unclassified Mycolicibacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → unclassified Mycolicibacterium	1.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %
Actinobacteria bacterium OV450	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium OV450	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Mycobacterium angelicum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium angelicum	0.66 %
Mycobacterium lentiflavum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium simiae complex → Mycobacterium lentiflavum	0.66 %
Mycobacterium sp. JS623	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. JS623	3.97 %
Mycolicibacterium moriokaense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	0.66 %
Mycolicibacterium smegmatis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis	0.66 %
Mycolicibacterium sp. 018/SC-01/001	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → unclassified Mycolicibacterium → Mycolicibacterium sp. 018/SC-01/001	1.99 %
Unclassified	root	N/A	53.64 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001990\|JGI24737J22298_10037121	Not Available	1503	Open in IMG/M
3300002067\|JGI24735J21928_10107519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	802	Open in IMG/M
3300002075\|JGI24738J21930_10089377	Not Available	650	Open in IMG/M
3300002076\|JGI24749J21850_1025808	Not Available	837	Open in IMG/M
3300005328\|Ga0070676_10017236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	3997	Open in IMG/M
3300005330\|Ga0070690_100624075	Not Available	820	Open in IMG/M
3300005330\|Ga0070690_100796373	Not Available	733	Open in IMG/M
3300005334\|Ga0068869_100043655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	3221	Open in IMG/M
3300005335\|Ga0070666_10012627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. JS623	5334	Open in IMG/M
3300005337\|Ga0070682_100019994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	3934	Open in IMG/M

Showing 1 to 10 of 122 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	36.42%
Host-Associated	Host-Associated	63.58%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	63.58%
Terrestrial	Environmental → Terrestrial	36.42%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	31.13%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.13%
Roots	Host-Associated → Plants → Roots	1.32%
Soil	Environmental → Terrestrial → Soil	36.42%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	27.15%
Loam	Environmental → Terrestrial → Soil → Loam	21.19%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.32%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	15.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.31%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	21.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.66%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	27.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.32%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.30%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.66%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	11.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.66%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.66%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	7.28%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	7.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.96%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 104 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24737J22298_100371211	3300001990	Corn Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRXCEGHHPA
JGI24735J21928_101075191	3300002067	Corn Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRXCEGHHPAXRQKVXATTPD*
JGI24738J21930_100893772	3300002075	Corn Rhizosphere	MNDTNGSAVWCPICGEPAKVIHLDYXGEPAKVIQVSTTEGWSEATGHLVTIRACTNVHCEGHHPA
JGI24738J21930_101295111	3300002075	Corn Rhizosphere	CGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
JGI24749J21850_10258081	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	MTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTP
JGI24742J22300_100881402	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	VVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0070676_100172362	3300005328	Miscanthus Rhizosphere	MTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0070690_1000308801	3300005330	Switchgrass Rhizosphere	QVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0070690_1006240752	3300005330	Switchgrass Rhizosphere	AAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0070690_1007963732	3300005330	Switchgrass Rhizosphere	MNDTNGSAVWCPICGEPAKVIQVSTTEGWSEATGHLVTIRACTNVHCEGHHPAVRQRPQALTLN*
Ga0068869_1000436555	3300005334	Miscanthus Rhizosphere	LGNLFAMNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0070666_100126273	3300005335	Switchgrass Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0070682_1000199941	3300005337	Corn Rhizosphere	MNDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0070682_1001746991	3300005337	Corn Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0070682_1017467111	3300005337	Corn Rhizosphere	ICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0068868_10000232515	3300005338	Miscanthus Rhizosphere	MTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0068868_10000431910	3300005338	Miscanthus Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0070689_1001032971	3300005340	Switchgrass Rhizosphere	AWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0070689_1001671961	3300005340	Switchgrass Rhizosphere	AAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0070689_1003719422	3300005340	Switchgrass Rhizosphere	LGNLFAMNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0070687_1003884892	3300005343	Switchgrass Rhizosphere	AAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0070668_1005816982	3300005347	Switchgrass Rhizosphere	MNDTNGSAVWCPICGEPAKVIQVSTTEGWSEATGHLVTIRACTNVRCEGHHPAVRQKPQALTLN*
Ga0070675_1002526231	3300005354	Miscanthus Rhizosphere	MNDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRA
Ga0070673_1007531561	3300005364	Switchgrass Rhizosphere	IAMNDTNGSAVWCPICGEPAKVIQVSTTEGWSEATGHLMTIRACTNVHCEGHHPAVRQRPQALTLN*
Ga0070688_1005836741	3300005365	Switchgrass Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVR
Ga0070688_1006789752	3300005365	Switchgrass Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRDST*
Ga0070667_1000615811	3300005367	Switchgrass Rhizosphere	GEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0070667_1004487301	3300005367	Switchgrass Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0070701_100051811	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHP
Ga0070711_1009998501	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNDTNGSAVWCPICGEPAKVIPVSTTEGWSEATGHLVTIRACTNVRCEGHHPAVRQNPQALTLN*
Ga0070705_1000532845	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	NDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD
Ga0070694_1000817313	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	EAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0070694_1014832211	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCTICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0070678_1006489551	3300005456	Miscanthus Rhizosphere	CGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0070662_1016088291	3300005457	Corn Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPAVRQKV
Ga0070699_1009007261	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	AAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQEGHATTPD*
Ga0070679_1012093321	3300005530	Corn Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRA
Ga0068853_1001479593	3300005539	Corn Rhizosphere	DSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0070672_1007099592	3300005543	Miscanthus Rhizosphere	MTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0070686_1002117812	3300005544	Switchgrass Rhizosphere	MNDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0070686_1010098652	3300005544	Switchgrass Rhizosphere	SIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0070665_1001657876	3300005548	Switchgrass Rhizosphere	IEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVHATTPD*
Ga0070704_1000008491	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	WCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0070704_1013233491	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	AWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0068856_1013094251	3300005614	Corn Rhizosphere	GWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0068852_1000504293	3300005616	Corn Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0068859_1011622011	3300005617	Switchgrass Rhizosphere	VQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0068859_1020435242	3300005617	Switchgrass Rhizosphere	MNDTNGSAVWCPICGEPAKVIQVSTTEGWSEATGHLVTIRACTNVHCEGHHPAVRQRPQA
Ga0068864_1016537212	3300005618	Switchgrass Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0068866_100100185	3300005718	Miscanthus Rhizosphere	AWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0068866_103753301	3300005718	Miscanthus Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICDEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPAVRQKV
Ga0068861_1000015087	3300005719	Switchgrass Rhizosphere	MTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVHATTPD*
Ga0068862_1011269611	3300005844	Switchgrass Rhizosphere	AEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0070716_1000167263	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATYLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0070712_1000079388	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0070712_1006092744	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNDTNDSTAWCPICGEAAEVVQVSTEDGWSEGAMHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0070712_1015965842	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0068871_1001820183	3300006358	Miscanthus Rhizosphere	LGNLFAMNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATYLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0068871_1003133482	3300006358	Miscanthus Rhizosphere	AEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0068865_1006765052	3300006881	Miscanthus Rhizosphere	PICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0068865_1007668292	3300006881	Miscanthus Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYC
Ga0068865_1011172532	3300006881	Miscanthus Rhizosphere	ITTVRFGQSIAMNDTNDSAAWCPVCGEAAEVVQVSIEDGWSEAATHLVTIRACTNTYCEGHHPAMRQQARATTLD*
Ga0105244_100527114	3300009036	Miscanthus Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAV
Ga0105240_123482451	3300009093	Corn Rhizosphere	CPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0105247_102845642	3300009101	Switchgrass Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHFVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0105243_100771101	3300009148	Miscanthus Rhizosphere	QVDIASPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0105248_100219798	3300009177	Switchgrass Rhizosphere	CPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0105238_100971284	3300009551	Corn Rhizosphere	SDLGNLFAMNDTNDSTAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRDSA*
Ga0105249_108726701	3300009553	Switchgrass Rhizosphere	MNDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0105249_110307192	3300009553	Switchgrass Rhizosphere	MNDTNDSAAWCPICGEAAEAVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0134125_101138371	3300010371	Terrestrial Soil	QSFAMTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0134125_103707861	3300010371	Terrestrial Soil	MNDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0134126_111440891	3300010396	Terrestrial Soil	RTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0134126_114689682	3300010396	Terrestrial Soil	EVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0134126_121005941	3300010396	Terrestrial Soil	MNDTNDSTAWCPICGEAAEVVQVSTEDGWSEGAMHLVTIRACTKRYCEGHHPAVRQKVHA
Ga0134122_102283201	3300010400	Terrestrial Soil	GITTVRFGQSFAMTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0134122_111225762	3300010400	Terrestrial Soil	WCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG*
Ga0134121_1000218017	3300010401	Terrestrial Soil	MIDTNDSAAWCPSCGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0134121_102923473	3300010401	Terrestrial Soil	PICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD*
Ga0157297_104365301	3300012914	Soil	ICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0164300_102085272	3300012951	Soil	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0164299_116784081	3300012958	Soil	MDHTNSSALGCPICGAPVEDVHVSTEDGWSEAATHLATVLACTNRYCKGRDPAVLHRVRATTLD*
Ga0164306_103455791	3300012988	Soil	MNDTTDSAAWCPICGEAAEVVQVSIEDGWSEAATHLATIRACTNRYCEGHYPAVRQKVRATTLD*
Ga0164306_115430702	3300012988	Soil	CPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVCQIVRATTPD*
Ga0164305_102678981	3300012989	Soil	MNDTNDSAAWCPICGETAEVVQASTEDGWSEAATHLVTIRACTNRHCEGHHPAVRQKVRARTLD*
Ga0157374_106878281	3300013296	Miscanthus Rhizosphere	QVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0157374_107983982	3300013296	Miscanthus Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRD
Ga0157378_104358022	3300013297	Miscanthus Rhizosphere	DTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE*
Ga0157378_123506321	3300013297	Miscanthus Rhizosphere	AMNDTNDSAAWCPVCGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPALRQQARATTLD*
Ga0163162_104793052	3300013306	Switchgrass Rhizosphere	MNDTTDSAAWCPICGEAAEVVQVSLEDGWSEAATHLVTIRACTNRYCEGHHPAIRQKVRDSA*
Ga0163162_133193052	3300013306	Switchgrass Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRDSA*
Ga0157372_100271887	3300013307	Corn Rhizosphere	EAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0157380_101407464	3300014326	Switchgrass Rhizosphere	EAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA*
Ga0157380_104057861	3300014326	Switchgrass Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEYGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRDSA*
Ga0157380_110627163	3300014326	Switchgrass Rhizosphere	PVCGEAAEVVQVSIEDGWSEAATHLVTTRACTNRYCEGHHPALRQQARATTLD*
Ga0173478_102052141	3300015201	Soil	LGNLFAMNDTSDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD*
Ga0132258_103952648	3300015371	Arabidopsis Rhizosphere	GSAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTRG*
Ga0132258_104140415	3300015371	Arabidopsis Rhizosphere	CGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPAVRQKVRDSA*
Ga0132258_110633782	3300015371	Arabidopsis Rhizosphere	MNDIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCGGHHPAVRQKLRDSA*
Ga0132256_1008399401	3300015372	Arabidopsis Rhizosphere	MNDTNGSAAWCPICGEAAEVVRVSIEDGWSEAATHLVTIRACTNRWCEGHRLAVRQKVRDSA*
Ga0132256_1025319291	3300015372	Arabidopsis Rhizosphere	MHLHRTTSSVRHNDRPIGQSIAMNDTTGSAAWCPICGEAAEVVQVSTEDGWSEAATQLVTLRACTNRYCEGHHPAVRQKVRAKTRG*
Ga0132257_1034740581	3300015373	Arabidopsis Rhizosphere	MSDTNGSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACSNRFCEGHHPAVRQKVRDSA*
Ga0132255_1011293521	3300015374	Arabidopsis Rhizosphere	RPSDLGQSIAMNDTNGSAWCQICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPAVRQKVRDSA*
Ga0163161_110192391	3300017792	Switchgrass Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPAVRQKVR
Ga0210406_113598541	3300021168	Soil	ITTVRFGQSIAMNDSAASCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRPKVRAPTAD
Ga0207696_10543142	3300025711	Switchgrass Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVHATTPD
Ga0207682_100645353	3300025893	Miscanthus Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA
Ga0207642_100057034	3300025899	Miscanthus Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE
Ga0207642_101676751	3300025899	Miscanthus Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTSEGAADWLFADA
Ga0207642_109222821	3300025899	Miscanthus Rhizosphere	MNDTNGSAVWCPICGEPAKVIQVSTTEGWSEATGHLVTIRACTNVHCEGHHPAVRQRPQALTLN
Ga0207710_100024141	3300025900	Switchgrass Rhizosphere	VSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD
Ga0207710_104020281	3300025900	Switchgrass Rhizosphere	PICGEAAEAVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG
Ga0207688_101435643	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	TNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTP
Ga0207685_100659682	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	SDLGNLFAMNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA
Ga0207699_101528261	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	SAASCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD
Ga0207645_101170291	3300025907	Miscanthus Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATT
Ga0207643_103763031	3300025908	Miscanthus Rhizosphere	MNDIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD
Ga0207654_112336712	3300025911	Corn Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCDRHHPAVRQKVH
Ga0207707_104100591	3300025912	Corn Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVR
Ga0207671_101915341	3300025914	Corn Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA
Ga0207693_102175663	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG
Ga0207681_107389521	3300025923	Switchgrass Rhizosphere	IAMNDTNGSAVWCPICGEPAKVIQVSTTEGWSEATGHLVTIRACTNVHCEGHHPAVRQRPQALTLN
Ga0207694_102326813	3300025924	Corn Rhizosphere	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKV
Ga0207701_110143492	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MNDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG
Ga0207644_114961521	3300025931	Switchgrass Rhizosphere	MNDTNGSAVWCPICCEPAKVIQVSTTEGWSEATGHLVTIRACTNVRCEGHHPAVR
Ga0207686_108228721	3300025934	Miscanthus Rhizosphere	CGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG
Ga0207686_108627032	3300025934	Miscanthus Rhizosphere	VQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG
Ga0207704_1000186610	3300025938	Miscanthus Rhizosphere	VSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE
Ga0207704_100063466	3300025938	Miscanthus Rhizosphere	MTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD
Ga0207704_103249314	3300025938	Miscanthus Rhizosphere	PICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG
Ga0207691_100147682	3300025940	Miscanthus Rhizosphere	MTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD
Ga0207711_101705761	3300025941	Switchgrass Rhizosphere	MNDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD
Ga0207711_115508001	3300025941	Switchgrass Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPA
Ga0207712_100253272	3300025961	Switchgrass Rhizosphere	MNDTNDSAAWCPICGEAAEAVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPE
Ga0207712_106799481	3300025961	Switchgrass Rhizosphere	GQSFAMTGTNDWAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD
Ga0207712_114357801	3300025961	Switchgrass Rhizosphere	MNDTNGSAVWCPICGEPAKVIQVSTTEGWSEATGHLVTIRACTNVRCEGHHPAVRQKPQALTLN
Ga0207677_106050442	3300026023	Miscanthus Rhizosphere	FAMNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA
Ga0207708_102766263	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICGEVAEVVQVSVEEGWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD
Ga0207648_100463387	3300026089	Miscanthus Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVKIRACTNRYCEGHHPAVHQKVRDSA
Ga0207675_1010469151	3300026118	Switchgrass Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQ
Ga0207698_104801641	3300026142	Corn Rhizosphere	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPALRQKVRATTPD
Ga0209974_103946091	3300027876	Arabidopsis Thaliana Rhizosphere	MNDTSDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAMRQKVRDSA
Ga0268265_104579302	3300028380	Switchgrass Rhizosphere	AWCPICGEVAEVVQVSVDEGWSEAATHLVTIRACTNRYCEGHHPAVRQKVRAKTPG
Ga0268265_106797142	3300028380	Switchgrass Rhizosphere	MNDTNGSAVWCPICGEPAKVIQVSTTEGWSEATGHLVTIRACTNVHCEGHHPAVRQ
Ga0268265_119987871	3300028380	Switchgrass Rhizosphere	MHNDRPIWANYFAMNDTHDSAAWCPICDEVAEVVQVSVEEGWSEAATHLVTIRACTNRYC
Ga0307473_108207401	3300031820	Hardwood Forest Soil	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA
Ga0310900_107342891	3300031908	Soil	GWSEAATHLVTIRACTNRYCEGHHPAVRQKVHATTPD
Ga0310906_102325811	3300032013	Soil	MIDTNDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRFCEGHHPAL
Ga0310906_108208151	3300032013	Soil	VVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA
Ga0307472_1019855782	3300032205	Hardwood Forest Soil	RPSDLGNLFAMNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVHQKVRDSA
Ga0373958_0079660_27_221	3300034819	Rhizosphere Soil	MNDTIDSAAWCPICGEAAEVVQVSIEDGWSEAATHLVTIRACTNRYCEGHHPAVRPKVRATTAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F046592

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences