Metagenome / Metatranscriptome Family F045984

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F045984
Family Type	Metagenome / Metatranscriptome
Number of Sequences	152
Average Sequence Length	49 residues
Representative Sequence	MTDEAEKRGELIRHLEDALALADEIEDGQTGFLIERALDEARSRQFRPIG
Number of Associated Samples	114
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.00 %
% of genes near scaffold ends (potentially truncated)	33.55 %
% of genes from short scaffolds (< 2000 bps)	83.55 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.737 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.395 % of family members)
Environment Ontology (ENVO)	Unclassified (22.368 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.816 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.85% β-sheet: 0.00% Coil/Unstructured: 46.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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SCOP family	SCOP domain	Representative PDB	TM-score
a.23.1.1: HSC20 (HSCB), C-terminal oligomerisation domain	d1fpoa2	1fpo	0.92577
a.182.1.1: GatB/YqeY domain	d1ng6a_	1ng6	0.91381
a.90.1.1: Transcription factor STAT-4 N-domain	d1bgfa_	1bgf	0.91222
a.146.1.1: Telomeric repeat binding factor (TRF) dimerisation domain	d3bqoa_	3bqo	0.91206
a.25.1.1: Ferritin	d4cvra_	4cvr	0.90649

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF02586	SRAP	3.95
PF00816	Histone_HNS	2.63
PF01381	HTH_3	2.63
PF04392	ABC_sub_bind	1.97
PF00072	Response_reg	1.32
PF00149	Metallophos	1.32
PF09361	Phasin_2	0.66
PF01068	DNA_ligase_A_M	0.66
PF01400	Astacin	0.66
PF00313	CSD	0.66
PF13384	HTH_23	0.66
PF02735	Ku	0.66
PF04325	DUF465	0.66
PF13683	rve_3	0.66
PF08241	Methyltransf_11	0.66
PF08240	ADH_N	0.66
PF12697	Abhydrolase_6	0.66
PF08734	GYD	0.66
PF03419	Peptidase_U4	0.66
PF00563	EAL	0.66
PF07750	GcrA	0.66
PF02371	Transposase_20	0.66
PF02566	OsmC	0.66
PF07045	DUF1330	0.66
PF01487	DHquinase_I	0.66
PF06742	DUF1214	0.66
PF14832	Tautomerase_3	0.66
PF00793	DAHP_synth_1	0.66
PF03795	YCII	0.66
PF06906	DUF1272	0.66
PF00497	SBP_bac_3	0.66

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	3.95
COG2916	DNA-binding protein H-NS	Transcription [K]	2.63
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.97
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.66
COG0710	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	0.66
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.66
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.66
COG5352	Uncharacterized conserved protein	Function unknown [S]	0.66
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.66
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.66
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.66
COG3813	Uncharacterized conserved protein, DUF1272 domain	Function unknown [S]	0.66
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.66
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.66
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.66
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.66
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.66
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.66
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.66
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.66
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.74 %
Unclassified	root	N/A	30.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.74 %
Unclassified	root	N/A	30.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.74 %
Unclassified	root	N/A	30.26 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.95 %
Unclassified	root	N/A	30.26 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.00 %
Unclassified	root	N/A	30.26 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.97 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.26 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.66 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.66 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.97 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.32 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.66 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.66 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.26 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.97 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.32 %
Ktedonosporobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae	0.66 %
unclassified Xanthobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae	0.66 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.97 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.32 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.32 %
unclassified Roseomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas	0.66 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	0.66 %
Ktedonosporobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter	0.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.97 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.66 %
Ktedonosporobacter rubrisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter → Ktedonosporobacter rubrisoli	0.66 %
Bradyrhizobium sp. CCGB12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	0.66 %
Roseomonas sp. OP-27	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. OP-27	0.66 %
Bradyrhizobium sp. CCBAU 21365	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 21365	0.66 %
Rhizobium skierniewicense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium skierniewicense	0.66 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	0.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.97 %
Rhizobium sp. SG570	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. SG570	0.66 %
Ktedonosporobacter rubrisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter → Ktedonosporobacter rubrisoli	0.66 %
Bradyrhizobium sp. CCGB12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	0.66 %
Roseomonas sp. OP-27	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. OP-27	0.66 %
Bradyrhizobium sp. CCBAU 21365	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 21365	0.66 %
Rhizobium skierniewicense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium skierniewicense	0.66 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	0.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17438662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	2086	Open in IMG/M
2228664022\|INPgaii200_c1158002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	670	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1063595	Not Available	543	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10151146	Not Available	558	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1095481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	521	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10094984	Not Available	631	Open in IMG/M
3300000956\|JGI10216J12902_100944380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1431	Open in IMG/M
3300001867\|JGI12627J18819_10225757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	754	Open in IMG/M
3300002245\|JGIcombinedJ26739_100028266	All Organisms → cellular organisms → Bacteria	4931	Open in IMG/M
3300002245\|JGIcombinedJ26739_100140626	Not Available	2280	Open in IMG/M
3300002910\|JGI25615J43890_1011242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1441	Open in IMG/M
3300002917\|JGI25616J43925_10005511	All Organisms → cellular organisms → Bacteria → Proteobacteria	5434	Open in IMG/M
3300002917\|JGI25616J43925_10108331	All Organisms → cellular organisms → Bacteria → Proteobacteria	1141	Open in IMG/M
3300004080\|Ga0062385_10437053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	792	Open in IMG/M
3300004080\|Ga0062385_11272059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300005166\|Ga0066674_10048708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1908	Open in IMG/M
3300005166\|Ga0066674_10203034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	943	Open in IMG/M
3300005174\|Ga0066680_10784288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300005179\|Ga0066684_10243292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1179	Open in IMG/M
3300005179\|Ga0066684_10630787	Not Available	720	Open in IMG/M
3300005181\|Ga0066678_10228229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1197	Open in IMG/M
3300005181\|Ga0066678_11050127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300005332\|Ga0066388_100050423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4266	Open in IMG/M
3300005332\|Ga0066388_100324134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2186	Open in IMG/M
3300005332\|Ga0066388_101219235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter → Ktedonosporobacter rubrisoli	1288	Open in IMG/M
3300005332\|Ga0066388_102023903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1033	Open in IMG/M
3300005332\|Ga0066388_102091757	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300005332\|Ga0066388_105655537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300005332\|Ga0066388_105771680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	626	Open in IMG/M
3300005332\|Ga0066388_106278758	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005363\|Ga0008090_15888812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750	Open in IMG/M
3300005435\|Ga0070714_100138256	All Organisms → cellular organisms → Bacteria	2184	Open in IMG/M
3300005445\|Ga0070708_100290006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1540	Open in IMG/M
3300005446\|Ga0066686_10272303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1147	Open in IMG/M
3300005471\|Ga0070698_101173649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	717	Open in IMG/M
3300005518\|Ga0070699_100356308	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300005533\|Ga0070734_10130393	Not Available	1465	Open in IMG/M
3300005554\|Ga0066661_10272696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1045	Open in IMG/M
3300005556\|Ga0066707_10522990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300005587\|Ga0066654_10698084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300005713\|Ga0066905_100050803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2536	Open in IMG/M
3300005713\|Ga0066905_101281579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300005764\|Ga0066903_100076648	All Organisms → cellular organisms → Bacteria → Proteobacteria	4328	Open in IMG/M
3300005764\|Ga0066903_100998999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1529	Open in IMG/M
3300005764\|Ga0066903_102716764	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300005764\|Ga0066903_103641027	Not Available	829	Open in IMG/M
3300005764\|Ga0066903_103644673	Not Available	829	Open in IMG/M
3300005764\|Ga0066903_104744123	Not Available	723	Open in IMG/M
3300005764\|Ga0066903_108192216	Not Available	535	Open in IMG/M
3300005842\|Ga0068858_101408242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	687	Open in IMG/M
3300005937\|Ga0081455_10247493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1306	Open in IMG/M
3300006049\|Ga0075417_10383232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300006050\|Ga0075028_100519774	Not Available	697	Open in IMG/M
3300006172\|Ga0075018_10009704	Not Available	3531	Open in IMG/M
3300006173\|Ga0070716_100385530	All Organisms → cellular organisms → Bacteria → Proteobacteria	1003	Open in IMG/M
3300006175\|Ga0070712_100629708	Not Available	910	Open in IMG/M
3300006796\|Ga0066665_10129123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1894	Open in IMG/M
3300006796\|Ga0066665_10309278	Not Available	1273	Open in IMG/M
3300006845\|Ga0075421_100101418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3622	Open in IMG/M
3300006854\|Ga0075425_101561285	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300006854\|Ga0075425_102643569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	554	Open in IMG/M
3300006954\|Ga0079219_10727816	Not Available	761	Open in IMG/M
3300007255\|Ga0099791_10197635	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300007258\|Ga0099793_10492716	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300007265\|Ga0099794_10357037	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300009012\|Ga0066710_102419164	Not Available	761	Open in IMG/M
3300009090\|Ga0099827_10163918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1827	Open in IMG/M
3300009137\|Ga0066709_100447318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	1806	Open in IMG/M
3300009137\|Ga0066709_102844933	Not Available	640	Open in IMG/M
3300009137\|Ga0066709_104599251	Not Available	504	Open in IMG/M
3300009176\|Ga0105242_10954348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	862	Open in IMG/M
3300010038\|Ga0126315_10943397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300010046\|Ga0126384_10229805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1487	Open in IMG/M
3300010047\|Ga0126382_12482341	Not Available	505	Open in IMG/M
3300010399\|Ga0134127_12557305	Not Available	590	Open in IMG/M
3300011269\|Ga0137392_10018321	All Organisms → cellular organisms → Bacteria	4856	Open in IMG/M
3300011269\|Ga0137392_10036360	All Organisms → cellular organisms → Bacteria	3618	Open in IMG/M
3300011270\|Ga0137391_11548089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	507	Open in IMG/M
3300012096\|Ga0137389_11030856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	705	Open in IMG/M
3300012198\|Ga0137364_10265462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1270	Open in IMG/M
3300012199\|Ga0137383_10234747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1344	Open in IMG/M
3300012202\|Ga0137363_10340735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1239	Open in IMG/M
3300012204\|Ga0137374_10051265	All Organisms → cellular organisms → Bacteria	4247	Open in IMG/M
3300012204\|Ga0137374_10390558	Not Available	1109	Open in IMG/M
3300012204\|Ga0137374_10856401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium skierniewicense	670	Open in IMG/M
3300012207\|Ga0137381_10731875	Not Available	859	Open in IMG/M
3300012207\|Ga0137381_10849095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	790	Open in IMG/M
3300012208\|Ga0137376_10141702	Not Available	2063	Open in IMG/M
3300012209\|Ga0137379_10398020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1287	Open in IMG/M
3300012210\|Ga0137378_10668784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	949	Open in IMG/M
3300012356\|Ga0137371_10873596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	684	Open in IMG/M
3300012358\|Ga0137368_10648750	Not Available	667	Open in IMG/M
3300012361\|Ga0137360_10100514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2211	Open in IMG/M
3300012361\|Ga0137360_10705778	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300012363\|Ga0137390_10236753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. SG570	1811	Open in IMG/M
3300012363\|Ga0137390_11885366	Not Available	527	Open in IMG/M
3300012917\|Ga0137395_10307275	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300012923\|Ga0137359_10980857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	726	Open in IMG/M
3300012924\|Ga0137413_10718487	Not Available	760	Open in IMG/M
3300012951\|Ga0164300_10330674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300012972\|Ga0134077_10569259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300012976\|Ga0134076_10337044	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300014501\|Ga0182024_11071553	All Organisms → cellular organisms → Bacteria → Proteobacteria	954	Open in IMG/M
3300014638\|Ga0181536_10059497	Not Available	2427	Open in IMG/M
3300015264\|Ga0137403_10131454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2485	Open in IMG/M
3300016341\|Ga0182035_11624094	Not Available	583	Open in IMG/M
3300018060\|Ga0187765_11341063	Not Available	508	Open in IMG/M
3300018431\|Ga0066655_10102263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1608	Open in IMG/M
3300018433\|Ga0066667_12058555	Not Available	527	Open in IMG/M
3300018468\|Ga0066662_10058479	All Organisms → cellular organisms → Bacteria	2506	Open in IMG/M
3300018468\|Ga0066662_10302555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1344	Open in IMG/M
3300018468\|Ga0066662_12954876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300021178\|Ga0210408_11265372	Not Available	561	Open in IMG/M
3300021420\|Ga0210394_10858742	Not Available	791	Open in IMG/M
3300021432\|Ga0210384_10167345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1975	Open in IMG/M
3300021479\|Ga0210410_10927590	Not Available	758	Open in IMG/M
3300025929\|Ga0207664_10134200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2087	Open in IMG/M
3300026306\|Ga0209468_1179679	Not Available	535	Open in IMG/M
3300026319\|Ga0209647_1034276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2929	Open in IMG/M
3300026330\|Ga0209473_1048153	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300026547\|Ga0209156_10266052	Not Available	787	Open in IMG/M
3300026551\|Ga0209648_10428056	Not Available	842	Open in IMG/M
3300027502\|Ga0209622_1059914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	692	Open in IMG/M
3300027603\|Ga0209331_1006283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3210	Open in IMG/M
3300027680\|Ga0207826_1127703	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300027701\|Ga0209447_10120421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300027703\|Ga0207862_1252131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300027826\|Ga0209060_10321574	Not Available	705	Open in IMG/M
3300027894\|Ga0209068_10190323	Not Available	1125	Open in IMG/M
3300027903\|Ga0209488_10631746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300027903\|Ga0209488_11193006	Not Available	513	Open in IMG/M
3300027909\|Ga0209382_11931535	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300028047\|Ga0209526_10314467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1057	Open in IMG/M
3300028047\|Ga0209526_10420774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	883	Open in IMG/M
3300028878\|Ga0307278_10385729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300028881\|Ga0307277_10056808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1602	Open in IMG/M
3300031573\|Ga0310915_11036666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. OP-27	571	Open in IMG/M
3300031708\|Ga0310686_112409646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	541	Open in IMG/M
3300031708\|Ga0310686_116136914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300031708\|Ga0310686_116201982	Not Available	569	Open in IMG/M
3300031719\|Ga0306917_10414757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1052	Open in IMG/M
3300031890\|Ga0306925_10583501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1182	Open in IMG/M
3300031890\|Ga0306925_11539863	Not Available	649	Open in IMG/M
3300031910\|Ga0306923_10461056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1441	Open in IMG/M
3300031910\|Ga0306923_12572008	Not Available	500	Open in IMG/M
3300031912\|Ga0306921_10010358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9911	Open in IMG/M
3300031947\|Ga0310909_10386127	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300031954\|Ga0306926_12102745	Not Available	632	Open in IMG/M
3300032068\|Ga0318553_10526327	Not Available	619	Open in IMG/M
3300033290\|Ga0318519_10206437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 21365	1122	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.74%
Host-Associated	Host-Associated	5.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.13%
Plants	Host-Associated → Plants	5.26%
Aquatic	Environmental → Aquatic	4.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.13%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.95%
Freshwater	Environmental → Aquatic → Freshwater	2.63%
Sediment	Environmental → Aquatic → Sediment	1.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.32%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.11%
Loam	Environmental → Terrestrial → Soil → Loam	21.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.95%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.32%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.32%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.11%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.95%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.32%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.66%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.66%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.16%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.29%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.32%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.32%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.32%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.66%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.66%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.66%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.66%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02750740	2088090014	Soil	MIDKADKRGQLIRHLEDALALADEIEDGRTGYLIERTLDEAR
INPgaii200_11580021	2228664022	Soil	MMDDAEKRGQLIRYLEDALALADEIEDGHTGYLIERALDEA
AP72_2010_repI_A01DRAFT_10635951	3300000579	Forest Soil	MTNQPKKRGRLIEDALELADEIEDGLTGFLIERALDQARARQFTPMR*
AF_2010_repII_A1DRAFT_101511462	3300000597	Forest Soil	AMTDVAEKRGQLIRHLEDALALADEIEDGQTGFLIERALDEARQFRLIARS*
AF_2010_repII_A100DRAFT_10954811	3300000655	Forest Soil	MGTSATMDGAEKRGQLIRHLEDALALAVEIDDGHTGYLIDRAMDE
AF_2010_repII_A001DRAFT_100949842	3300000793	Forest Soil	PPAAVRQEDAAMTDVAEKRGQLIRHLEDALALADEIEDGQTGFLIERALDEARQFRLIARS*
JGI10216J12902_1009443804	3300000956	Soil	MMDEAEKRGQIIRHLEDALALADEMEDGQTGFLIERAIEEARSRQFRPMG*
JGI12627J18819_102257572	3300001867	Forest Soil	MTDHAEKRGQLIRHLEDALALADEVEDGFLIERALDETRSRHFRPI
JGIcombinedJ26739_1000282661	3300002245	Forest Soil	MDLAGKRGEIIRHLEDALAITDEIEDGEAGYLIERALDAARSRLFR
JGIcombinedJ26739_1001406261	3300002245	Forest Soil	MDLAGKRGEIIRHLEDALAITDEIEDGEAGYLIERALDAARSRLF
JGI25615J43890_10112422	3300002910	Grasslands Soil	MTDHAEKRGQLIRHLEDALALADEVEDGFLIERALDEARSRHFRPIG*
JGI25616J43925_1000551110	3300002917	Grasslands Soil	MIDSAQKRGELIKHLEDALGLADEIQDGQTRFLIERALDEARSRQFRPVADKN*
JGI25616J43925_101083311	3300002917	Grasslands Soil	MTDHAEKRGQLIRHLEDALALADEVEDGFLIERALDEARSRHF
Ga0062385_104370531	3300004080	Bog Forest Soil	AELRGRLIKHLEDALALADEIDDGQTGFLIERALDEARSSQFRPPRE*
Ga0062385_112720591	3300004080	Bog Forest Soil	AELRGRLIKHLEDALALADEIDDGPTGFLIERALDEARSSQFRPVRE*
Ga0066674_100487083	3300005166	Soil	MTNEAEKRSKLIRHLEDALALADEIEDGHTGFVIERALDEARSRQFRPIG*
Ga0066674_102030342	3300005166	Soil	MTDEADKRGQLIRHLEDALALADEIEDGEIGFLIERALDEARSRQFRLTG*
Ga0066680_107842881	3300005174	Soil	MTDEADKRGQLIRHLEDALALADEIEDGETGFLIERALDEARSRQFRLTG
Ga0066684_102432922	3300005179	Soil	MTDEADKRGQLIRHLEDALALADEIEDGETGFLIERALDEARSRQFRLTG*
Ga0066684_106307872	3300005179	Soil	CMTDEADKRGRLIRHLEDALALADEIEDGNTGYLIESALDEARSRQFRPIR*
Ga0066678_102282291	3300005181	Soil	MTNEAEKRSKLIRHLEDALALADEIEDGHTGFVIERALDEAR*
Ga0066678_110501271	3300005181	Soil	MTDHAEKRGQLIRHLEDALALADEVEDGFLIERALDEARSRQFRPIG*
Ga0066388_1000504235	3300005332	Tropical Forest Soil	MTNQPEKRGRLIRHLEDALELADEIEDGLTGFLIERARDQARARQFTPMR*
Ga0066388_1003241345	3300005332	Tropical Forest Soil	MTDEADKRGQLIPHLALADEIEDGNTGFLIERALDEARSRQFKPIG*
Ga0066388_1012192352	3300005332	Tropical Forest Soil	MTDEADNVVQLIRHLEDALALADEIEDGQQDILIERALDEARSHQFRPIG*
Ga0066388_1020239033	3300005332	Tropical Forest Soil	MMDHAEKRGQLIRHLEDALALADEIEDGHTGYLIERALD*
Ga0066388_1020917571	3300005332	Tropical Forest Soil	MTNEADKRGKLNALALADEIEDGNTGFLIERALDEARLRQFRPAE*
Ga0066388_1056555372	3300005332	Tropical Forest Soil	MADEADKRGQLIRHLEDALALADEIEDGNTGFLIERALDEARSRQFRPIG*
Ga0066388_1057716801	3300005332	Tropical Forest Soil	MTDEADKRGQLIRHLEDALALADEIEDGNTGFLIERALDEARSRQFRPMA*
Ga0066388_1062787582	3300005332	Tropical Forest Soil	MMDDAERHGQLIRYPEDALVLADEIEDGHTGYLIERALDEARSRQFKPIG*
Ga0008090_158888121	3300005363	Tropical Rainforest Soil	MDKAEKRGQLIRHPEDALALADEIEDGQTGFLIERALDEARSRQFRPIG*
Ga0070714_1001382561	3300005435	Agricultural Soil	RGQLIRYLEDALALADEIEDGHTGYLIERALDEARSRQFKPIG*
Ga0070708_1002900064	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIDSAEKRGKLIKHLEDALALADEIEDGQTGFLIERALDEARSRQFRPIG*
Ga0066686_102723032	3300005446	Soil	KRSKLIRHLEDALALADEIEDGHTGFVIERALDEARSRQFRPIG*
Ga0070698_1011736491	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDDEEKRGQLFRYLEDALALADEIEDGHTGCLVERALDEARSRQFKPIG*
Ga0070699_1003563083	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTDHAEKRGQLIRHLEDALTLADEIEDGQTGFLIERALDEARSRHFRPIG*
Ga0070734_101303931	3300005533	Surface Soil	MIDLADRRGQIIRLLEDALALADDLQDGAVGFLIERALDEARSRQFRPPDNKA*
Ga0066661_102726961	3300005554	Soil	MTDHAEKRGQLIRHLEDALALADEVEDGFLIERALDEARSR
Ga0066707_105229903	3300005556	Soil	MTNEAEKRGQLIRHLEDALALADEIEDGHTGFLIERALDEARSRQFRPIG*
Ga0066654_106980841	3300005587	Soil	MTDEADKRGQLIRRLEDALALADEIEDGTTGFLIERALDEARSRQFR
Ga0066905_1000508035	3300005713	Tropical Forest Soil	MNDAAEKRGQLIRHLQEALALADEIQDGPISYLIERTLDEALTSI*
Ga0066905_1012815791	3300005713	Tropical Forest Soil	MTDHAEKRGQLIRHLEDALALADEIEDGQTGFLIERALDEARSRYFRPIG*
Ga0066903_1000766481	3300005764	Tropical Forest Soil	MNDPAAARGELIRYLENALAIADEIEDGKTGYLIERALDEARSAQFKPVAKK*
Ga0066903_1009989993	3300005764	Tropical Forest Soil	MTDEAEKRGELIRHLEDALALADEIEDGQTGFLIERALDEARSRQFRPIG*
Ga0066903_1027167642	3300005764	Tropical Forest Soil	MTDEADKVVQLIRHLEDALALADEIEDGQQDILIERALDEARSHQFRPIG*
Ga0066903_1036410272	3300005764	Tropical Forest Soil	MTYEADKRGELIRHLEEALMLADEIEDGQTGFLIERALDEARSRQFRPTT*
Ga0066903_1036446732	3300005764	Tropical Forest Soil	MTDDAEKRGQLIRQLEDALALADEMGDGQTGFLIERALDEARSRQFRPRL*
Ga0066903_1047441231	3300005764	Tropical Forest Soil	MGDSAEERGRIIQYLQAALEIADELEDGETSYLIERALDAARATQFRLLVVDP*
Ga0066903_1081922162	3300005764	Tropical Forest Soil	ADKRGQLIPHLALADEIEDGNTGFLIERALDEARSRQFKPIG*
Ga0068858_1014082422	3300005842	Switchgrass Rhizosphere	LMSDTAEKRGQIIRLLEEAFALADEIEDGNTGYLIERALDEARSRHFIPIAGQSR*
Ga0081455_102474931	3300005937	Tabebuia Heterophylla Rhizosphere	MTDHAEKRGQLIRHLEDALALADEIEDGQTGFLIERALDEARSRHFRPIG*
Ga0066656_105647671	3300006034	Soil	KVPGNQRMTDEADKRGQLIRHLEDALALADEIEDGETGFLIERALDEARSRQFRLTG*
Ga0075417_103832322	3300006049	Populus Rhizosphere	EKRGQLIRHLEEALSLADEIEDGQTGFLIERALDEARSRQFRPTG*
Ga0075028_1005197742	3300006050	Watersheds	MGTAVKRGEIIRYLEEALALADEIEDGESGYLIERELDETRAKHFRPAK*
Ga0075018_100097043	3300006172	Watersheds	MIDSAEKCGRPIKHLEDSFALADEIQDGEITFLIEHARH*
Ga0070716_1003855304	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTDDAEKRGQLIRYLEDALALADEIEDGRTGYLIERALDEA
Ga0070712_1006297081	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MMMNDAEKCYLEDASALADELADCHTGYLIERALDEARSRQFRPI
Ga0066665_101291233	3300006796	Soil	MTNEAEKRSQLIRHLEDALALADEIEDGHTGFVIERALDEARSRQFRPIG*
Ga0066665_103092782	3300006796	Soil	MTDEADKRGQLIRHLEDALALADEIEDGEIGFLIERALDEARSRP*
Ga0075421_1001014181	3300006845	Populus Rhizosphere	AEKRGQLIRHLEEALSLADEIEDGQTGFLIERALDEARSRQFRPTG*
Ga0075425_1015612851	3300006854	Populus Rhizosphere	KRGQLTRHLEDALALADEIEDGQTGYLIERAIDEARSRQFRLAE*
Ga0075425_1026435691	3300006854	Populus Rhizosphere	MRNQPEKRGRLIRHLEDALELADEIEDGQIGFLIERVLDEARARQFTPIR*
Ga0079219_107278161	3300006954	Agricultural Soil	MTNQPEKRGRLIRHLEDALELADEIEDGLTGFLIERALDQARARQFTPMR*
Ga0099791_101976352	3300007255	Vadose Zone Soil	MIDSAQKRELIRHLEDALALADEIQDGQTGFLIERALDEARSRQFRAIG*
Ga0099793_104927162	3300007258	Vadose Zone Soil	MIDSAQKRELIRHLEDALALADEIQDGQTGFLIERALDEARLRQFRAIG*
Ga0099794_103570372	3300007265	Vadose Zone Soil	MIDSAQKRELIRHLEDALALADEIQDGQTGFLIERALDEARSRQFRPIG*
Ga0066710_1024191642	3300009012	Grasslands Soil	MTNQPEKRGRLIRHLEDALELADEIEDGQIGFLIERALDQARARQFTPTR
Ga0099827_101639182	3300009090	Vadose Zone Soil	MIDSAQTRGQLIKHLEDALALADEINDGQTSFLIERALDEARSRQFGPIA*
Ga0066709_1004473182	3300009137	Grasslands Soil	MSEGAGLTLTIMTEAEKRGQLIRHLEDALALADEIDDGQTGFLIERALDEARSHQFRPAK
Ga0066709_1028449331	3300009137	Grasslands Soil	MIDSAEKRGHLIRHLEEALALADELRDGQTGFLIERALDE
Ga0066709_1045992511	3300009137	Grasslands Soil	MIDSAEKRGHLIRHLEEALALADELRDGQTGFLIERALDEARSRQFRPVADT*
Ga0105242_109543482	3300009176	Miscanthus Rhizosphere	IQTHMTDDADKRGQLIRHLEDALAVADEIDDGQTGFLIERALDEARSRQFRPIG*
Ga0126315_109433971	3300010038	Serpentine Soil	CAGKGKEIRPMRDEAEKRGQLIRQLEEALTLADEIEDGQTGFLIERALDEARSRQFRPIA
Ga0126384_102298051	3300010046	Tropical Forest Soil	KRGQLIRHLQEALALADEIQDGPIRYLIERTLDEALTSI*
Ga0126382_124823411	3300010047	Tropical Forest Soil	MTDHAEKRGQLIRHLEDALALADEIEDGQTGFLIERAVDEARSRQFRLVG*
Ga0134127_125573051	3300010399	Terrestrial Soil	MTPPRRIAERMDQAEKRSQLIRHLEDALALADEIQDGHTGCLIERALDETRSH*
Ga0137392_100183219	3300011269	Vadose Zone Soil	MIDSAQKRELIRHLEDALALADEIQNGQTGFLIERALDEARSRQFRAIG*
Ga0137392_100363606	3300011269	Vadose Zone Soil	MIDSAQKRGELIKHLEDALGLGDEIQDGQTRFLIERALDEARSRQFRPVADKN*
Ga0137391_115480891	3300011270	Vadose Zone Soil	MDHAAKRGEIIRYLEEALALADEIEDGKTGYLIERALDEVRA
Ga0137389_110308561	3300012096	Vadose Zone Soil	MIDSAQKRGELIKHLEDALGLADEIQDGQTRFLIERALDEARSRQF
Ga0137364_102654622	3300012198	Vadose Zone Soil	MTNEAEKRGQLIRHLEDALALADEIEDGHTGFVIERALDEARSRQFRPIG*
Ga0137383_102347471	3300012199	Vadose Zone Soil	MTDEADKRGQLIRHLEDALALADEIEDGEIGFLIERALDEARSRQFRLTA*
Ga0137363_103407352	3300012202	Vadose Zone Soil	MTHEADKRGQLILHLEEALALADEIDDGQTGFLIERALDEARSRQFRPIG*
Ga0137374_100512653	3300012204	Vadose Zone Soil	MTDEADKRGQLIRHLEEALALADEIEDGQAGFLIERAVDEARSRQFRPIG*
Ga0137374_103905581	3300012204	Vadose Zone Soil	MTDKAEKRGQLIQLIRHLEEALSLADEIEDGQTGFLIVRVLDEARSRQFRPTG*
Ga0137374_108564012	3300012204	Vadose Zone Soil	MIDSAERRGEIIKHLEHALALADELQDGETGFLIERALDETRARQFRLICGVEENKC*
Ga0137381_107318752	3300012207	Vadose Zone Soil	MANEAEKRSKLIRHLEDALALADEFEDDHTGFLIERALDEARSRQFRPIG*
Ga0137381_108490951	3300012207	Vadose Zone Soil	MTDEADKRGQLIGHLEDALALADEIEDGETGFLIERALDEARSRQFRLTG*
Ga0137376_101417022	3300012208	Vadose Zone Soil	MTDEAEKRGQLIRHLEEALALADEIEDGQTGFLIERALDEARSRQFRPTG*
Ga0137379_103980202	3300012209	Vadose Zone Soil	MTDEADKRGQLIRHLEDALALADEIEDGEIGFLIERALDEARSSQFRLTG*
Ga0137378_106687842	3300012210	Vadose Zone Soil	MTNEAEKRSKLIRHLEDALALADEIEDGHTGFVIERALDEARSRQFRPTG*
Ga0137371_108735961	3300012356	Vadose Zone Soil	MTDEADKRGQLIRHLEDALALADEIEDGETGFLIERALDEA
Ga0137368_106487503	3300012358	Vadose Zone Soil	MTDKAEKRGQLIQLIRHLEEALSLADEIEDGQTGFLIERVLDEARSRQFRPTG*
Ga0137360_101005146	3300012361	Vadose Zone Soil	MTDRAEKRGQIIRHLEDALALADEIEDGQTGFLIERALDEARSRQFRPIG*
Ga0137360_107057782	3300012361	Vadose Zone Soil	MPDEAEKRGQLIRHLEEALALAGEIEDGQTGFLIERALDEARSRQFRPTA*
Ga0137390_102367533	3300012363	Vadose Zone Soil	MIDSAQRRGELIRHLEDPLALADEIQDGQTGFLIERALDEARSHQFRLIG*
Ga0137390_118853661	3300012363	Vadose Zone Soil	LKDEAEKRGQLIRHLEEALALADEIEDGQTGFLIERAFDEARSHQFRSTD
Ga0137395_103072753	3300012917	Vadose Zone Soil	MIDSAQKRELIRHLEDALALADEIQDGQTGFLIERALDEARSRQFRAIGRAIARYQQLWAM*
Ga0137359_109808572	3300012923	Vadose Zone Soil	GELIKHLEDALGLADEIQDGQTRFLIERALDEARSRQFRPFA*
Ga0137413_107184871	3300012924	Vadose Zone Soil	MDTAAKRGKLIRDLEDALALTEEIGDAKTGYLIERALDQARSEQFTPPPTA*
Ga0164300_103306743	3300012951	Soil	MMDQAEKRGQLIRHLEDLALSDEIQDGHTGYLIERALDEARSR
Ga0134077_105692591	3300012972	Grasslands Soil	MTNEAEKRSKLIRHLEDALALADEIEDGHTGFLIERALDEARSRQFRPIG*
Ga0134076_103370441	3300012976	Grasslands Soil	NQRMTDEADKRGQLIRHLEDALALADEIEDGEIGFLIERALDEARSRQFRLTG*
Ga0182024_110715532	3300014501	Permafrost	MLNPAEIRGQMIRKLEEALALTDEIADPTTSFLIERALDEARSQQFRLPDEDRGAT*
Ga0181536_100594974	3300014638	Bog	MIDSAEKRGQIIQSLEEALALTDEIGDAATGFLIERALDEARSQQF*
Ga0137403_101314544	3300015264	Vadose Zone Soil	MSMDHAAKRGEIIRYLEEALALADEIEDGKTGYLIERALDEVRAGQFKPSR*
Ga0182035_116240941	3300016341	Soil	MDLAKKRGEIIKHLQNALTFADEIGDGETGFLIERALDAARSRFFRLLADKA
Ga0187765_113410631	3300018060	Tropical Peatland	MDLAEKRGEIIKHLQDALTLADEIGTGETGFLIERALDAARSRLFRFLADKT
Ga0066655_101022632	3300018431	Grasslands Soil	MTDEADKRGQLIRHLEDALALADEIEDGEIGFLIERALDEARSRQFRLTG
Ga0066667_120585551	3300018433	Grasslands Soil	MIIGETPMMDSAQKRGELILHLEEALALADEIQARQTGFMIERALDEARSRQFRPIG
Ga0066662_100584794	3300018468	Grasslands Soil	PMTNEAEKRSKLIRHLEDALALADEIEDGHTGFVIERALDEARSRQFRPIG
Ga0066662_103025553	3300018468	Grasslands Soil	MTDEADKRGQLIRHLENALALADEIEDGETGFLIERALDEARSRQFRLTG
Ga0066662_129548762	3300018468	Grasslands Soil	MTNEAEKRGQLIRHLEDALEALADEIEDGHTGFLIERALDEARSRQFRPIG
Ga0210408_112653721	3300021178	Soil	RGQLIRRLEDALALADDIGDGPTAYLIERALDEARSGQFRPIA
Ga0210394_108587422	3300021420	Soil	MTDVAEKRGQLINFLEEAMALADEIRDSNTGFLIERALDEARTSQFRPARR
Ga0210384_101673454	3300021432	Soil	MPLEWGATEMMDDAEKRGQLIRHLEDALTLADEIRDGHTGYLIERALGSALASI
Ga0210410_109275903	3300021479	Soil	MIESAERRGQLIKHLEDAFALTDELQDGEIGFLIERALDEARSRQFRPVNK
Ga0207664_101342003	3300025929	Agricultural Soil	RGQLIRYLEDALALADEIEDGHTGYLIERALDEARSRQFKPIG
Ga0209468_11796792	3300026306	Soil	MTNEAEKRSKLIRHLEDALALADEIEDGHTGFVIERALDEARSRQFRPIG
Ga0209647_10342762	3300026319	Grasslands Soil	MTDHAEKRGQLIRHLEDALALADEVEDGFLIERALDEARSRHFRPIG
Ga0209473_10481531	3300026330	Soil	MTNEAEKRSKLIRHLEDALALADEIEDGHTGFVIERALDEARSRQ
Ga0209156_102660523	3300026547	Soil	MTNEAEKRGQLIRHLEDALEALPDEIEDGHIGFLIERALDEARSRQFRPIG
Ga0209648_104280563	3300026551	Grasslands Soil	QKRGELIKHLEDALGLADEIQDGQTRFLIERALDEARSRQFRAIG
Ga0209622_10599141	3300027502	Forest Soil	MTDHAEKRGQLIRHLEDALALADEVEDGFLIERALDETR
Ga0209331_10062832	3300027603	Forest Soil	MDLAGKRGEIIRHLEDALAIADEIEDGEAGYLIERALDAARSRLFRLLANKD
Ga0207826_11277033	3300027680	Tropical Forest Soil	MDLTEKRGEIIKRLRDALTLADEIGDGETGILIERALDAACSHLFRLLADNLGR
Ga0209447_101204211	3300027701	Bog Forest Soil	MVDAAELRGRLIKHLEDALALADEIDDGPTGFLIERALDEARSSQFRPVRE
Ga0207862_12521311	3300027703	Tropical Forest Soil	MDLTEKRGEIIKHLQDALTLADEIEDGETGYLIERALDAARSRLFRLLADKT
Ga0209060_103215741	3300027826	Surface Soil	MIDLADRRGQIIRLLEDALALADDLQDGAVGFLIERALDEARSRQFRPP
Ga0209068_101903231	3300027894	Watersheds	AKKRGHLIKHLENAFALADEIQDGEIAFLIERALDEARSRQFRSVNK
Ga0209488_106317461	3300027903	Vadose Zone Soil	MISAAEIRGQIIRHLEDALALADELQDGQTGFLIERALDEARSRQF
Ga0209488_111930062	3300027903	Vadose Zone Soil	MIDSAQKRGELIKHLEDALGLGDEIQDGQTRFLIERALDEARSRQFRPVADKN
Ga0209382_119315351	3300027909	Populus Rhizosphere	MTDEAEKRGQLIRHLEEALSLADEIEDGQTGFLIERALDEARSRQFRPTG
Ga0209526_103144673	3300028047	Forest Soil	MIDSAEMRGELIRCLEDALALAEQLDDGTTEYLVERALDEARSRLFTPAADRN
Ga0209526_104207742	3300028047	Forest Soil	MTDPADKRGQLIKHLEEAFALADEMEDGEIEFLIERALDEARSRQFRPVNK
Ga0307278_103857292	3300028878	Soil	MTDKAEKRGQLIQLIRHLEEALSLADEIEDGQTGFLIVRVLDEARSRQFRPTG
Ga0307277_100568082	3300028881	Soil	MDDAEKRGQLIRYLEEALALAEEIQDGHAGYLIERALDEARSRLFR
Ga0170819_170426711	3300031469	Forest Soil	MACLAGNRGEIIRHLEGALAIADEIEDGEAGYLIERALDAARSRLFRLLANKD
Ga0310915_110366661	3300031573	Soil	MTDHAEKRGQLIRHLEDVLALADEIEDGQIGFLIERALDEARSRHFRPIG
Ga0310686_1124096461	3300031708	Soil	MTDTAETRGKLIRHLEEALVLADEVGDAHTGFLIERALDEARSRQFRPMTDKT
Ga0310686_1161369143	3300031708	Soil	MTNAAETRGKLIRHLEEALALADEVGDAATGFLIERALDEARSRQFRPMA
Ga0310686_1162019821	3300031708	Soil	VAEKRGQVIKHLEEALSLADIEDSATGFLIAPALDEARSRLFRLKVQPDE
Ga0306917_104147571	3300031719	Soil	MTDHAEKRGQLIRHLEDDLALADEIEDGQTGFLIERALDEARSRHFRPIS
Ga0306925_105835012	3300031890	Soil	KRGEIIRHLEGALFIADEIEDGEVGYLIERALDAARARLFRLLANKD
Ga0306925_115398631	3300031890	Soil	MTDDAEKRGQLIRDVEEVLALADEIEDGQTGFLIEHALDGAITSI
Ga0306923_104610561	3300031910	Soil	MDLAEKRGEIITHLEDALSIADEIEDGEVGYLIERALDAARARLFRLLANKD
Ga0306923_125720082	3300031910	Soil	MDLAEKRGEIIKHLQNALTFADEIGDGETGFLIERALDAARSRFF
Ga0306921_100103581	3300031912	Soil	MIDTAAKRGELIKYLEEAMAIADELEDGTTGYLIERAL
Ga0310909_103861272	3300031947	Soil	MTYEADKRGELIRHLEEALMLADEIEDGQTGFLIERALDEARSRQFRPTT
Ga0306926_121027452	3300031954	Soil	MDLAEKRGEIIKHLQNALTFADEIGDGETGFLIERALDAARSRFFRLLADKA
Ga0318553_105263272	3300032068	Soil	DHAEKRGQLIRHLEDALALADEIEDGQTGFLIERALDEARSRHFRPIG
Ga0318519_102064373	3300033290	Soil	DHAEKRGQLIRHLEDDLALADEIEDGQTGFLIERALDEARSRHFRPIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F045984

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences