NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F045925

Metagenome / Metatranscriptome Family F045925

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F045925
Family Type Metagenome / Metatranscriptome
Number of Sequences 152
Average Sequence Length 90 residues
Representative Sequence MSEHDEDLELQALQRQLDDAFQTTRPRRGFEDDLWLRMQASRPATNRLRDAIAGLLQGIREVPAVPAAAVAALLVVVIGVGLLAYSGVGRG
Number of Associated Samples 129
Number of Associated Scaffolds 152

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 80.92 %
% of genes from short scaffolds (< 2000 bps) 73.03 %
Associated GOLD sequencing projects 116
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (81.579 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(28.947 % of family members)
Environment Ontology (ENVO) Unclassified
(49.342 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(71.053 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138
1JGI12709J13192_10065433
2JGI12683J13190_10200602
3JGI20186J14852_10108842
4JGI12635J15846_100060891
5JGI12635J15846_105966981
6JGI12635J15846_108680232
7JGI12053J15887_100260075
8JGI25382J37095_100105606
9JGI25388J43891_10629022
10JGI25390J43892_101653201
11JGI25617J43924_100294361
12JGI25616J43925_103801512
13Ga0066674_100184974
14Ga0066672_102489591
15Ga0066683_101233343
16Ga0066673_102130423
17Ga0066679_100625804
18Ga0066690_106219522
19Ga0066684_104658362
20Ga0066685_108537882
21Ga0066685_111280502
22Ga0066685_111531541
23Ga0066678_1000168012
24Ga0066388_1013284543
25Ga0066686_109468992
26Ga0066682_103902411
27Ga0066687_102065861
28Ga0070699_1002663613
29Ga0070697_1000529955
30Ga0070697_1004111271
31Ga0066661_107784382
32Ga0066692_110324711
33Ga0066704_101650973
34Ga0066670_101967781
35Ga0066670_103976391
36Ga0066693_100830543
37Ga0066705_101341233
38Ga0066702_106519342
39Ga0066691_104753721
40Ga0070762_108459431
41Ga0066903_1021238241
42Ga0066651_101430023
43Ga0075017_1009506971
44Ga0075030_1013984271
45Ga0075014_1008564491
46Ga0079222_105518882
47Ga0066653_101409823
48Ga0066659_1000289811
49Ga0066660_107716841
50Ga0075425_1001800484
51Ga0075434_1001356604
52Ga0075436_1004821801
53Ga0099793_102268192
54Ga0066710_1022140011
55Ga0066710_1028540981
56Ga0066793_106380901
57Ga0066793_106387281
58Ga0099828_118111851
59Ga0099827_106260522
60Ga0105858_11453361
61Ga0116216_101218673
62Ga0134082_104815511
63Ga0134084_101574022
64Ga0134086_101267152
65Ga0134065_100639861
66Ga0134080_100789103
67Ga0137392_101440911
68Ga0137393_103550193
69Ga0137388_112268721
70Ga0137399_102764551
71Ga0137376_107100381
72Ga0137378_108479631
73Ga0137377_103455951
74Ga0137377_103567451
75Ga0137377_107626503
76Ga0137386_112388101
77Ga0137375_102733441
78Ga0137390_106041421
79Ga0137390_114172921
80Ga0134051_12180532
81Ga0137396_108238631
82Ga0137419_102095381
83Ga0137419_111794322
84Ga0137416_118641282
85Ga0137416_118733311
86Ga0137407_104922233
87Ga0120125_10648473
88Ga0134081_100848322
89Ga0134075_103171302
90Ga0134078_100482523
91Ga0134079_106138611
92Ga0134069_10501633
93Ga0066655_107517752
94Ga0066667_114573671
95Ga0066667_118491722
96Ga0066662_101191441
97Ga0066662_118167532
98Ga0066669_102752911
99Ga0066669_117430161
100Ga0193723_10698691
101Ga0193751_10525321
102Ga0210399_110533302
103Ga0215015_109323622
104Ga0210396_117709951
105Ga0193695_10010588
106Ga0210409_106978071
107Ga0212123_102004911
108Ga0207646_101387721
109Ga0207664_103995763
110Ga0209880_10216213
111Ga0209881_11649291
112Ga0209234_11999642
113Ga0209235_10729483
114Ga0209237_10052331
115Ga0209238_10457283
116Ga0209688_10471822
117Ga0209469_10097476
118Ga0209469_10615351
119Ga0209055_12300492
120Ga0209761_12973561
121Ga0209686_11119263
122Ga0209267_13222722
123Ga0209158_11043563
124Ga0209804_10345574
125Ga0209804_12063041
126Ga0209159_10695273
127Ga0209806_10152276
128Ga0209806_11496582
129Ga0209806_12381351
130Ga0209160_12536862
131Ga0209056_107085531
132Ga0209805_10235691
133Ga0209805_12430501
134Ga0209648_103046653
135Ga0209577_101098124
136Ga0209577_105932882
137Ga0209220_11557682
138Ga0209331_10749012
139Ga0209076_11029561
140Ga0209011_10594193
141Ga0208991_11984122
142Ga0208989_101413771
143Ga0209580_102514011
144Ga0209167_104157131
145Ga0209283_103888513
146Ga0209698_100694441
147Ga0257175_11301541
148Ga0307305_101366091
149Ga0307469_122204142
150Ga0307479_1002138610
151Ga0307479_111828261
152Ga0307471_1017021611
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 61.34%    β-sheet: 0.00%    Coil/Unstructured: 38.66%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090MSEHDEDLELQALQRQLDDAFQTTRPRRGFEDDLWLRMQASRPATNRLRDAIAGLLQGIREVPAVPAAAVAALLVVVIGVGLLAYSGVGRGExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
81.6%18.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Agricultural Soil
Arctic Peat Soil
Permafrost
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Permafrost Soil
Soil
Prmafrost Soil
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Populus Rhizosphere
3.3%15.8%7.2%28.9%13.2%7.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12709J13192_100654333300001086Forest SoilVSDSEDLELEALQRQLDDAFETTRPRPGFEDELWTRMQAQRPAGSRLRDAWLGLIQGIREVPAVPMAAVAALLVVIIGAGLFAYSGL
JGI12683J13190_102006023300001089Forest SoilMSDQEDELELAALQRQLDDAFETTRPRIGFEDELWTRMQARRPAGTRLRDAWLGFVQGIRAVPAVPTAAVAALLVVAIGAGVVTMSGVGRGGSTGTS
JGI20186J14852_101088423300001405Arctic Peat SoilVSEPEDLELEGLQRQLDDAFETTRPRAGFEDELWTRMQARRPAVTRLRDAWMGLLQGIREVPAVPLAAVAAVLVVVLGAGVLVY
JGI12635J15846_1000608913300001593Forest SoilVSDSEDLELEALQRQLDDAFETTRPRPGFEDELWTRMQAQRPAGSRLRDAWLGLIQGIREVPAVPMAAVAALLVVIIGAGLFAYSGLGAAP
JGI12635J15846_1059669813300001593Forest SoilMSEDEEDIELRALQRQLDDAFETTRPRRGFEDQLWLRLQARRPFWRSVQDGLAAVVDRAREVPAVPAAAVAAVLIVVIGVG
JGI12635J15846_1086802323300001593Forest SoilVSEPEDLELEALKRQLDDAFETTRPRAGFEDELWTRMQARRPVGSRLRDAWFGLVQGIREAPAVPMAAVAAVLVVLLGAGVLLHGGLGRGGSTASTA
JGI12053J15887_1002600753300001661Forest SoilLSEPEDLELEALQRQLDDAFDTTRPRAGFEDELWTRMQARRPAGSRLRDAWLGLIQSIREAPAVPMAAVAAVLVVVIGVSVLAYSGARFGGGAGSTASLS
JGI25382J37095_1001056063300002562Grasslands SoilVSEQEDELELQALQRQLDDAMETTRPRPDFEDELWLRMQTSRPAQRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSGLGR
JGI25388J43891_106290223300002909Grasslands SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIGVGIIAYSGRGHLGG
JGI25390J43892_1016532013300002911Grasslands SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIGVGII
JGI25617J43924_1002943613300002914Grasslands SoilVSEPDEPEDLEVAALQRQLDDAFETTRPRPGFEDELWTRMQATRPAGSRLRDAWLGLVQAIREAPAVPMAAVAAVLVVVI
JGI25616J43925_1038015123300002917Grasslands SoilVSEPEEELEIQALQRQLDDAFETTRPRPAFEDELWLKMQSTRPAPRRVRDAISGFFQGVRAVPGVPAAAVAVLLMVVIGVGVVTLSGIGPHYGGGASTASNY
Ga0066674_1001849743300005166SoilVSEKDEDLELQALQRELDDAFATTRPRVGFDDELWLRMQAKRPLLTRIRDAFAGMFQGIREVPAVPTAAIAGVLVVALGVGILAYSGIGRGGGGGTTMGASAPGNVARDN
Ga0066672_1024895913300005167SoilMSDPDEELELQALQRQLDDAFETTRPRTGFEDELWLRMQSSRAAPSRLRDALSGFFQVIREVPAVPAAAVAALLVVVIGVG
Ga0066683_1012333433300005172SoilVSEPPEEIDDLELQALQRELDGAFESTRPRPGFEDELWLQVQSARPPQRRFGDVIYGLFQGIREVPAVPLAAVAATLVVVLGVGLFAYSGLG
Ga0066673_1021304233300005175SoilMSEHDEDLELQALQRQLDDAFQTTRPRRGFEDDLWLRMQASRPATNRLRDAIAGLLQGIREVPAVPAAGVAALLVVVIGVGLLAYSGVGRT
Ga0066679_1006258043300005176SoilVSDNHDEEVEIQALQRELDDAFQTTRPRTGFEDELWTRMQAQRPAPSRIRDALAGFFQGIREGPAVPAAALAAVLVVAIGVGIF
Ga0066690_1062195223300005177SoilMSEPEDELEIQALQRELDDAFATTRPRPAFEDELWLRMQSSRPATSRLRDAIAGFLRGIREVPAVPAAAVAALLVVVIG
Ga0066684_1046583623300005179SoilMSEPEEDLELQALQRQLDDAFETTRPRRGFEDELWVRMQASRPATNRLRDALAGLIQGIREVPAVPAAAVAA
Ga0066685_1085378823300005180SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQSSRPAKSRLGDAFAGFWEGIREVPAVPAAAVAAVLVVAV
Ga0066685_1112805023300005180SoilMSERDDDLELQALQRELDDAFATTRPRRDFEDELWLRMQAARPATNRLRDAIAGLLQGIREVPAVPAAAVATLLVV
Ga0066685_1115315413300005180SoilLSEPEEELELQALQRQLDDAMETTRPRPDFEDELWLRMQTSRPAPRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSG
Ga0066678_10001680123300005181SoilVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVAGVLVVVLG
Ga0066388_10132845433300005332Tropical Forest SoilVSDQEEDLEVLALQRQLDDAFETTRPRRGFEDELWARMQARRPATNRFRDAFAGFWRGVREVPAVPAAAVATLLVVVIGGGFLFYGVSRIHGTSGGAN
Ga0066686_1094689923300005446SoilVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVAG
Ga0066682_1039024113300005450SoilVSEPPEEIDDLELQALQRELDGAFESTRPRPGFEDELWLQVQSARPPQRRFGDVIYGLFQGIREVPAVPL
Ga0066687_1020658613300005454SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIGVGIIAYSGRGHLGGGGASSTAGESAARADQLYAGAFGRVPTPAFNGGAKN
Ga0070699_10026636133300005518Corn, Switchgrass And Miscanthus RhizosphereVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVAGVLVVVLGVGIFAYSGIGRGGGSTATMGASAPGHDARGNT
Ga0070697_10005299553300005536Corn, Switchgrass And Miscanthus RhizosphereVSEPDDDLELQALQRELDDAFATTRPRAGFDDELWLRMQAKRPLSTRLRDAFAGLVQGLRDVPAVPIAAVAGALVVVLGVGIFAYS
Ga0070697_10041112713300005536Corn, Switchgrass And Miscanthus RhizosphereMNDGEDLEQAALQRQLDDAFETTRPRAGFEDELWLRIQARRPIWTRLGESISGLVGAIREAPSVPAGVIAVFVV
Ga0066661_1077843823300005554SoilMSEPDDQLELQALQRQLDDAFETTRPRTGFEDELWLRMQSSRPARSRFRDALSGFLQGIREVPAVPAGVVAVLLVVVIGVGTVALSGLGRGGGGASSSTQGAN
Ga0066692_1103247113300005555SoilMSDPDEELELQALQRQLDDAFETTRPRTGFEDELWLRMQSSRAAPSRLRDALSGFFQVIREVPAVPAAAVAALLVVVIGVGVVALSGVGRSGPTGGASTAG
Ga0066704_1016509733300005557SoilVSEPDDELELQALQRQLDDAFETTRPRAGFEDELWLRMQSSRPARSRLRDALSGLLQGIREVPAVPAGAVAVLLVVV
Ga0066670_1019677813300005560SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVP
Ga0066670_1039763913300005560SoilVSKQDDELELQALQRELDDAFATTRPRVGFDDDLWLRMQARRPLSTRLRDAFAGLVQGIRDVPAVPTAAVASFLVVLLGVGIFAYSA
Ga0066693_1008305433300005566SoilVNENDEDLELAALQRQLDDAFETTRPRPGFDDELWLRVQSSRPASSRLRDALSGLIGGIRAVPTVPLAAAAA
Ga0066705_1013412333300005569SoilMSEPEEDLELQALQRQLDDAFETTRPRRGFEDELWVRMQASRPATNRLRDALAGLIQGIREVPAVPAAAVAAALVVALGVGLLANSGLGRHAGGASTA
Ga0066702_1065193423300005575SoilMSETDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIGVGIIAYSGRGHLGGGGASSTAG
Ga0066691_1047537213300005586SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIG
Ga0070762_1084594313300005602SoilVSEPEDLELEALQRQLDDAFETTRPRAGFEDELWTRMQAHRPVGSRLRDAWLGLIQSIREAPTVPMAAVATVLVVVLGASALLYSGIGR
Ga0066903_10212382413300005764Tropical Forest SoilVSEQEPDLELEALQRQLDDAFETTRPRRGFEDELWARMQATRPATNRVRDAFAGFIRGMRAVPTVPGAAVA
Ga0066651_1014300233300006031SoilMSEPDGDLELQGLQRELDDAFHTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAA
Ga0075017_10095069713300006059WatershedsMSERDDELELEALQRQLDDAFATTRPRMGFEDELWLRMQARRPFLTRLQGAFGGLFPRMRELPAVPSAVVAGLLVVLIGASAIGLSGRFRSTSSEMSTTAG
Ga0075030_10139842713300006162WatershedsMSEHDDELELDALRRQLDDAFETTRPRRGFEDELWVRMQARRPVWSRLRSAFGGLVAGVREAPAVPAAAVAAVLVVVIGVSVIGLN
Ga0075014_10085644913300006174WatershedsMSEHDDELELDALRRQLDDAFETTRPRRGFEDELWVRMQARRPVWSRLRSAFGGLVAGVREAPAVPAAAVAAVLVVVIGVSVIGLNGLGRSSN
Ga0079222_1055188823300006755Agricultural SoilVSEHEEDLELQALQRELDDAFATTRPRRGFEDELWVRMQSARPARNRLRDAIAGFVQAIREVPAVPAAAVATVLVLALGVGLIAYSGLGRGGGGAGTAS
Ga0066653_1014098233300006791SoilVSEKDEDLELQALQRELDDAFATTRPRVGFDDELWLRMQAKRPLLTRIRDAFAGMFQGIREVPAVPTAAIAGVLVVALGVGILAYSGIGRGGGGGTTMGASAPGNVARDNTNLSAGAFGP
Ga0066659_10002898113300006797SoilVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVA
Ga0066660_1077168413300006800SoilMSEPEEDLELQALQRQLDDAFETTRPRRGFEDELWVRMQASRPATNRPRDALAGLIQGIREVPAVPAAAVAAALVVALGVGLLANSGLGRHA
Ga0075425_10018004843300006854Populus RhizosphereVSERPEEIDLELQALQRELDGAFESTRPRAGFEDELWLQVQDARPAQRRFGDVIYGLFQGIREVPAVPMAAVAAALV
Ga0075434_10013566043300006871Populus RhizosphereMSDRDDDLELQALQRELDDAFATTRPRRDFEDELWLRMQAARPATNRLRDAIAGLLQGIREVPAVPAAAVATLLVVILGVGLLASVHPRLGGGGG
Ga0075436_10048218013300006914Populus RhizosphereVSDQEEDLEVLALQRQLDDAFATTRPRRDFEDELWARMQASRPAPNRFRDAVAGFMQGIREVPAVPAAAVATVLVVVLGVGLFAYSGIGQR
Ga0099793_1022681923300007258Vadose Zone SoilMSDSEDLELQALQRQLDDAFETTRPRVGFEDELWTRIQARRPASTRLRDAWLGLVQGIRQAPAVPMGAVAVVLVVALGVGVLTLSGFHLAGGGGAGGTS
Ga0066710_10221400113300009012Grasslands SoilVSEQDDELELQALQRELDDAFATTRPRAGFDDELWLRMQSKRPLSTRLRDAFAGLVQGLRDVPAVPIAAVAGALVVVLGVGILAYSGL
Ga0066710_10285409813300009012Grasslands SoilVSEQDEDLELQALQRELDDAFATTRPRVGFDDELWLRMQARRPLSIRIRDAFAGMFQGIREVPAVPMAAVAGLLVVVIGVGIFAYSGIGRGGGGGTTM
Ga0066793_1063809013300009029Prmafrost SoilVSEPEDLELEALQRQLDDAFETTRPRAGFEDELWTRMQARRLAGTRLRDAWLGLVQGIREVPAVPMAAVAALLVVVLGASVLVYSGVGRGGGGA
Ga0066793_1063872813300009029Prmafrost SoilVSEPEDLELEALQRQLDDAFETTRPRAGFEDELWTRMQARRPAGTRLRDAWLGLVQGIREVPAVPMAAVAALLVVVLGASVLVYSGVGRGGGGA
Ga0099828_1181118513300009089Vadose Zone SoilVSDSEDLELQALQRQLDDAFETTRPRPGFEDELWTRIQAHRPASTRLRDAWNGLIQGIRQAPAVPMGAV
Ga0099827_1062605223300009090Vadose Zone SoilMSEPDEELELQALQRQLDDAFETTRPRTGFEDELWSRMQSSRPARSRLRDALSGFLQGIREVPAVPAGVVAVLLVVVIGVGTVALSGLGRGGGGASSSTQGANLSAPD
Ga0105858_114533613300009661Permafrost SoilVSDPEEDLELEALQRQLDDAFETTRPRIGFEDELWTRMQARRPAGTRLRDAWLGLIQGIREVPAVPMAAVAAVLVVIIGAGIVTFSG
Ga0116216_1012186733300009698Peatlands SoilVSEPDDELELQALQRRLDDAFETTRPRVGFEDELWARMQARRPATSRLREAFAGLIHGIREVPAVPMAAV
Ga0134082_1048155113300010303Grasslands SoilVSKQDDELELQALQRELDDAFATTRPRVGFDDELWLRMQARRPLSTRLRDAFAGLVQGIRDVPAVPTAAVAGFLVVLLGVGIFAYSGIGHHGGAGG
Ga0134084_1015740223300010322Grasslands SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIGVGIIAYSGRGHLGGGGASSTAGESAARADQLYAGAFGRLPTPAFNGG
Ga0134086_1012671523300010323Grasslands SoilVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVAGVLVVVLGVGIFTYSGIGRGGGSTATM
Ga0134065_1006398613300010326Grasslands SoilMSEPDGDLELQGLQRELDDAFHTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIG
Ga0134080_1007891033300010333Grasslands SoilVSEKDEDLELQALQRELDDAFATTRPRVGFDDELWLRMQAKRPLLTRIRDAFAGMFQGIREVPAVPTAAI
Ga0137392_1014409113300011269Vadose Zone SoilVNEPEDLELEALKRQLDDAFQTTRPRPDFEDELWTRMQARRPAGTRLRDAWMGLVQGIREAPGVPMAAVAAVLVVVLGAGVVVYSGLGRGGGTTA
Ga0137393_1035501933300011271Vadose Zone SoilVSEQEEDLELQALQRQLDDAFETTRPRPGFDDELWLRMQSSRPARTRLRDAIAGLFQGIREVPAVPAAAVATLLVLALGIGILRYSGLHLGGGGASTAGSAGQEAPANG
Ga0137388_1122687213300012189Vadose Zone SoilVSEQDEDLELQALQRQLDDAFETTRPRRGFEDELWLRMQSSRPAQSRLRDAWAGFWQGIRAVPAVPAAAVAVAMVVVIGVVLVGYSGLLQ
Ga0137399_1027645513300012203Vadose Zone SoilMSDGEDLELQALQRQLDDAFETTRPRVGFEDELWTRIQARRPASTRLRDAWLGLVQGIRQAPAVPMGAVAVVLVVALGVGVLTLSGF
Ga0137376_1071003813300012208Vadose Zone SoilMSERDDDLELQALQRELDDAFATTRPRRGYEDELWLLIQEQRPVTNRLRDSLAAFWQSIRAVPVAPAAAVASILVIALGVGLFASSHGFGRGSSSSTGGAPSLS
Ga0137378_1084796313300012210Vadose Zone SoilMSDSEDLELQAIQRQLDDAFETTRPRAGFEDELWTRIQARRPASTRLRDAWLGLIGSIREAPAVPMGAVAVLLVVA
Ga0137377_1034559513300012211Vadose Zone SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQSSRPAGSRLGDAFAGFWQGIREVPAVPAAAVAAVLVVAVGIGILAYSGLGRGGGG
Ga0137377_1035674513300012211Vadose Zone SoilVSEPPEEIDDLELQALQRELDGAFESTRPRPGFEDELWLQVQSARPPQRRFGDVIYGLFQGIREVPAVPLAAVA
Ga0137377_1076265033300012211Vadose Zone SoilMSEPDGDLELQALQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRFSDAFAAFFQGI
Ga0137386_1123881013300012351Vadose Zone SoilMKEDEDLELAALQRQLDDAFETTRPRASFEDELWLRMQSRRPFWARLRDVLTGLVDGVREAPAVPATAVAVLLVVAIGIGFIRL
Ga0137375_1027334413300012360Vadose Zone SoilVSDQDDDLQLQALQRQLEDAFATTRPRPGFEDELWLRMQAKRPVLTRIRDAVGGLLGGIREVPAVPMAAVASVLVVVIGVGIFAYSGLGRGGGAGAPS
Ga0137390_1060414213300012363Vadose Zone SoilVSEREDDQELAALQRQLDDAFETTRPRVGFEDELWTRMQARRPAGTRLRDAWLGLVQGIRAVPAVPTAAVAALLVVIIGAGVVTMSGVGRIRSTTTSAPAGSQFASG
Ga0137390_1141729213300012363Vadose Zone SoilVSDREDIELEALQRRLDDAFETTRPRRGFEDELWLRIQARRPLWTRVLDGAADLLQGIREAPTVPASAIAVLLVVALGIFIFRL
Ga0134051_121805323300012398Grasslands SoilVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVAGVLVVVLGVGIFAYSGIGRG
Ga0137396_1082386313300012918Vadose Zone SoilVSEHEEDLELQAMQRQLDDAFETTRPRPDFEDELWLRVQSSRPASSRLRDAIAGLLQGIREVPAVPAAAVATLLVVAVGIGILASSGIRFGGGGGATSETSGQQAPAAG
Ga0137419_1020953813300012925Vadose Zone SoilLSEPEEELELQALQRQLDDALETTRPRPDFEDELWLRMQTSRPAPRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSGL
Ga0137419_1117943223300012925Vadose Zone SoilVSEQEEDLELQALQRQLDDAFETTRPRPGFDDELWLRMQSSRPARSRLRDAIAGLFQGIREVPAVPAAAVATLLVVALGIGILRYSGLHLGGGGASTAGSAGQEAPANGQFYAASFGRL
Ga0137416_1186412823300012927Vadose Zone SoilVSDPDEELELQALQRQLDDAFETTRPRTEFEDELWLRMQSSRPARSRLRDAISGLFQGIREVPAVPTAAV
Ga0137416_1187333113300012927Vadose Zone SoilLSEPEEELELQALQRQLDDAMETTRPRPDFEDELWLRMQTSRPAPRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAY
Ga0137407_1049222333300012930Vadose Zone SoilMSDSEDLELQAIQRQLDDAFETTRPRAGFEDELWTRIQARRPASTRLRDAWLGLIGSIREAPAVPMGAVAVLLVVALGVGVVTL
Ga0120125_106484733300014056PermafrostVSEPEDLELEALKRQLDDAFETTRPRAGFEDELWTRMQARRPVGTRLRDAWLGLVQGIREAPGVPMAAVAAVLV
Ga0134081_1008483223300014150Grasslands SoilMSERDDDLELQALQRELDDAFATTRPRRDFEDELWLRMQAARPATNRLRDAIAGLLQGIREVPAVPAAAVATLLVVILGVGLLAAVHPRLGGGGGAATSNYNA
Ga0134075_1031713023300014154Grasslands SoilMSEPDGDLELQGLQRELDDAFHTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVLVIGVGIIAYSGRGHLGGHGRSEQRQHEGNHRRQ*
Ga0134078_1004825233300014157Grasslands SoilMSEHDEDLELQALQRQLDDAFQTTRPRRGFEDDLWLRMQASRPATNRLRDAIAGLLQGIREVPAVPAAAVAALLVVVIGVGLLAYSGVGRG
Ga0134079_1061386113300014166Grasslands SoilVSEKDEDLELQALQRELDDAFATTRPRVGFDDELWLRMQAKRPLLTRIRDAFAGMFQGIREVPAVPTAAIAGVLVVALGVGILAYSGIGRGGGGGTTMGASAPGNVARDNTNLSA
Ga0134069_105016333300017654Grasslands SoilVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVAGVLVV
Ga0066655_1075177523300018431Grasslands SoilLSDDKEDLELAALQRELDDAFATTRPRRGFEDDLWLRRQASRPATNRLRDAIAGLLQGIREVPAVPAAAVATLLVVVIGVGLLAYS
Ga0066667_1145736713300018433Grasslands SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQSSRPAGSRLGDAFAGFWQGIREVPAVPAAAVAAVLVVAVGIGIFAYSGLGRGGGGA
Ga0066667_1184917223300018433Grasslands SoilVSKQDDELELQALQRELDDAFATTRPRVGFDDELWLRMQARRPLSTRLRDAFAGLVQGIRDVPAVPTAAVAGFLVVLLGVGIFA
Ga0066662_1011914413300018468Grasslands SoilMSEPEEELEIQALQRELDDAFATTRPRPPFEDELWLRMQSSRPATSRLRDAIAGFLQGIREVPAVPAAAVAALLVLVIGVGTVALSGLGRGGGGASTAT
Ga0066662_1181675323300018468Grasslands SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQGSRPAGSRLGDAFAGFWQGIREVPAVPAAAV
Ga0066669_1027529113300018482Grasslands SoilMSELDDDLEVQALQRELDDAFATTRPRRGYEDELWLLIQSQRPVTNRLRDALAGFWQSIRTVPAAPAAAVASILVVALGVGIFAAAGGFGRGGGLSSTSGA
Ga0066669_1174301613300018482Grasslands SoilLSEPEEELELQALQRQLDDAMETTRPRPDFEDELWLRMQTSRPAPRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSGLGRGGGGATSSSLSAGADRN
Ga0193723_106986913300019879SoilMSDSEDLELQALQRQLDDAFETTRPRAGFEDELWTRIQAHRPASTRLRDAWMGLIQGIREAPAVPMGAVAVLLVVVLGVSVVTLSGVHIGGGSG
Ga0193751_105253213300019888SoilVSEPEDLELEALKRQLDDAFETTRPRAGFEDELWTRMQARRPVGTRLRDAWLGLVQGIREAPGVPMAAVAAVLVVVL
Ga0210399_1105333023300020581SoilMSDDMDDLELQALQRQLDDAFETTRPRRGYEDELWLRMQARRPFWSRLRDALAGFAGGIRELPVLPTATVAVVLIL
Ga0215015_1093236223300021046SoilVSNNEDELELQALERELEDAFATTRPRAGYENELWLRMQAQRPAPSKIREAFAGFFQGIRAVPMVPAAATAAVLVVAIGVGAVVYTGAVQTRPSTASG
Ga0210396_1177099513300021180SoilVSEPDEDLELEALKRQLDDAFETTRPRAGYEDELWTRMQARRPAGTRLRDAWLGLVQGFREAPGVPMAAVAAVLVVLLGAGVVVYSGLGRGAGSLSLN
Ga0193695_100105883300021418SoilMSDSEDLELQALQRQLDDAFETTRPRPGFEDELWTRIQARRPATTRLRDAWLGLIQGIREAPAVPMGAVAVLLVV
Ga0210409_1069780713300021559SoilVSDREDIELQALQRQLDDAFETTRPRRGFEDELWLRMQTRRPFWVRIQDGLAGLFQAIREAPAVPAAAIAALLVVAIGVGIVRLG
Ga0212123_1020049113300022557Iron-Sulfur Acid SpringMSDTEDLELEALQRQLDDAFETTRPRAGFEDELWTRMQAQRPATSRLRDAWLGLIQGIREVPAVPMAAVAAVLVVIIGAGLFAYSGLGRGAGSAGTALSAGQNG
Ga0207646_1013877213300025922Corn, Switchgrass And Miscanthus RhizosphereVSDQDDDLELQALQRELDDAFATTRPRRGFEDELWLHMQARRPVSTRFADAIAGLFQGIREAPRVPAAAV
Ga0207664_1039957633300025929Agricultural SoilMDDLELQALQRQLDDAFETTRPRRGYEDELWLRLQARRPFWSRLRDALAGFGGAIREVPAVPAATVAVVLIVAVGLGV
Ga0209880_102162133300026271SoilVSEPEDLELEALQRQLDDAFETTRPRAGFEDELWTRMQVRRPAGTRLRDAWLGLVQGIREVPAVPMAAVAALLMVA
Ga0209881_116492913300026273SoilVSDPEDDLELEALQRQLDDAFETTRPRIGFEDELWTRMQARRPAGTRLRDAWLGLIQGIREVPAVPMAAVAAVLVVIIGAGIVTFS
Ga0209234_119996423300026295Grasslands SoilMSDKEEDLELQALQRQLDDAFETTRPRTGFEDELWLRMQAGRPAPRRFADAFSALLQGIREVPAVPMAAVAAVLVVAVGIGILAYGG
Ga0209235_107294833300026296Grasslands SoilVSEQEDELELQALQRQLDDAMETTRPRPDFEDELWLRMQTSRPAPRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSGLGRGGGGATTSSLSAGADRNYAAGTFGRV
Ga0209237_100523313300026297Grasslands SoilVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVAGVLVVVLGVGIFAYSGIGRGGG
Ga0209238_104572833300026301Grasslands SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAV
Ga0209688_104718223300026305SoilVSKQDDELELQALQRELDDAFATTRPRVGFDDELWLRMQARRPLSTRLRDAFAGLVQGIRDVPAVPTAAVAGFLVVLLGVG
Ga0209469_100974763300026307SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIGVGIIAYSGRGHLGGGGASSTAGESAARADQLYAGAFGRVPT
Ga0209469_106153513300026307SoilVSEKDEDLELQALQRELDDAFATTRPRVGFDDELWLRMQAKRPLLTRIRDAFAGMFQGIREVPAVPTAAIAGVLVVALGVGILAYSGI
Ga0209055_123004923300026309SoilLSEPEEELELQALQRQLDDAMETTRPRPAFEDELWLRMQTSRPAPRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSGLGR
Ga0209761_129735613300026313Grasslands SoilVSEQDEDLELRALQRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAVGGLFQGIREVPAVPMAAVAGVLVVVLGVGIFAYSGIGRGGG
Ga0209686_111192633300026315SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAA
Ga0209267_132227223300026331SoilMSEPEEELEIQALQRELDDAFATTRPRPPFEDELWLRMQSSRPATSRLRDAIAGFLQGIREVPAVPAAAVAALLVVVIGAGTVALSGLG
Ga0209158_110435633300026333SoilMSDPDEELELQALQRQLDDAFETTRPRTGFEDELWLRMQSSRAAPSRLRDALSGFFQVIREVPAVPAAAVAALLVVVIGVGVVAL
Ga0209804_103455743300026335SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPMAAVAAVLVVVIGVGIIAYSGRGHLGGGGASSTAGESAARADQLYAGAFG
Ga0209804_120630413300026335SoilMSEPEEELEIQALQRELDDAFATTRPRPPFEDELWLRMQSSRPATSRLRDAIAGFLQGIREVPAVPAAAVAALLVVVIGVGTVALSGLGRGAGGASTAT
Ga0209159_106952733300026343SoilVSEPPEEIDDLELQALQRELDGAFESTRPRPGFEDELWLQVQSARPPQRRFGDVIYGLFQGIREVPAVPLAAVAATLVVVLGVG
Ga0209806_101522763300026529SoilVSEQDEDLELQALRRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRVRDAFGGLFQGIREVPAVPMAAVAGVLVVVLGVGIFAYSGIGRGGGSTATMGANAPGNDARGNTNLAAGA
Ga0209806_114965823300026529SoilMSEPDGDLELQGLQRELDDAFRTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIGVGIIAYSGRGHLGGGG
Ga0209806_123813513300026529SoilMSEPEDELEIQALQRELDDAFATTRPRPAFEDELWLRMQSSRPATSRLRDAIAGFLRGIREVPAVPAAAVAALLVVVIGAGTVALS
Ga0209160_125368623300026532SoilLSEPEEELELQALQRQLDDAMETTRPRPDFEDELWLRMQTSRPAPRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSGLGRGGGGAT
Ga0209056_1070855313300026538SoilLSEPEEELELQALQRQLDDAMETTRPRPDFEDELWLRMQTSRPAPRRFGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSGLGRGGGGATSSSLSAGADRNY
Ga0209805_102356913300026542SoilMSEPEEDLELQALQRQLDDAFETTRPRRGFEDELWVRMQASRPATNRLRDALAGLIQGIREVPAVPAAAVAAALVVAL
Ga0209805_124305013300026542SoilMSEPEEELEIQALQRELDDAFATTRPRPPFEDELWLRMQSSRPATSRLRDAIAGFLQGIREVPAVPAAAVAALLVVVIGAGTVALSGLGRGGGGASTATQYNGSAPNQL
Ga0209648_1030466533300026551Grasslands SoilVSQDDEELDLKALERQLEDAFQTTRPRPDFEDELWLRVQSSRPAPRRLRDALAAFWNGVREVPAVPATATALVLIVAVGVGIFALNGLGHGEGGTPSSAV
Ga0209577_1010981243300026552SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARRLGDALAAFFQGIREVPAVPLAAVAAVLVVVIGVGIIAYSGRGHLGGGGA
Ga0209577_1059328823300026552SoilVSDREDDLETAALRRELDDAFATTRPRRGFEDELWTRMQASRPARNRLRDALEAFWQAVREVPAVPAAAVAAALVLAVGIGLFAYSGVGRGGGGASTASQYEGV
Ga0209220_115576823300027587Forest SoilVSEPEDLELEALKRQLDDAFETTRPRAGFEDELWTRMQARRPVGSRLRDAWFGLVQGIREAPAVPMAAVAAVLVVLLGAGVLLHGG
Ga0209331_107490123300027603Forest SoilMSDQDEDLELAALQRQLDDAFETTRPRAAFEDELWSRMQARRPAGTRLRDAWLGLVQGIRAVPAVPTAAVAALLVVIIGAGVLTMSG
Ga0209076_110295613300027643Vadose Zone SoilLSEPEEELELQALQRQLDDAMETTRPRPDFEDELWLRMQTSRPAPRRLGDAFGAFFRGVREVPAVPMAAVAAVLVVVVGVGILAYSGLGRGGGGATSSSLSAGADRNYAAGNFGR
Ga0209011_105941933300027678Forest SoilVSDSEDLELEALQRQLDDAFETTRPRPAFEDELWTRMQAHRPVGSRLRDAWLGLIQGIREVPAVPMAAVAALLVVIIGAGLFAYSGLGRGAGSGTTSLSAGQSGPQSD
Ga0208991_119841223300027681Forest SoilVSDTEDLELEALQRQLDDAFETTRPRAGFEDELWTRMQANRPATSRLRDAWLGLIQGIREVPAVPMAAVAAVLVVIIGAGLFAYSGLGRGGRETTSMSAGSAPQNDH
Ga0208989_1014137713300027738Forest SoilMSEQDEELELQALQRELDDAFATARPRAGYDDELWLRMQAARPAQSRFRDAFAGFFRGILAVPKVPAAAVATVL
Ga0209580_1025140113300027842Surface SoilMSEQDEDLELQALQRQLDDAFETTRPRPGFDDELWLRMQAHRPAASRLRDAFVGLFQAIRAVPAVPAAAVAALLVVAIGVGILARSGAHLGTG
Ga0209167_1041571313300027867Surface SoilMSDRRNEKIQRQLDDAFQTTRPRSGFEDELWLRMQSRRPFTSRLGDAFAGLVQGIRAVPAVPLASVAALLVVLIGVGIFS
Ga0209283_1038885133300027875Vadose Zone SoilMSDREDFELEALQRQLDDAFETTRPRRGFEDELWLRMQTHRPFLARMQDGLAGLFRAMREAPAVPAAAIAALLVVAIGVGIVRLGV
Ga0209698_1006944413300027911WatershedsMSEHDDELELDALRRQLDDAFETTRPRRGFEDELWVRMQARRPVWSRLRSAFGGLVAGVREAPAVPAAAVAAVLVVVIGVSVIGLNG
Ga0257175_113015413300028673SoilVSEPDDLELEALKRQLDDAFQTTRPRPDFEDELWTRMQARRPAGTRLRDAWMGLVQGIREAPGVPMAAVAAVLVVFLGAGVVVYSGLGR
Ga0307305_1013660913300028807SoilMSDSEDLELQALQRQLDDAFETTRPRPGFEDELWTRIQARRPATTRLRDAWLGLIQGIREAPAVPMGAVAVLLVVVLGVSVVTLSGVHIGGG
Ga0307469_1222041423300031720Hardwood Forest SoilMSERDDDLELQSLQRQLDDAFATTRPRREFEDELWLLIQEQRPVTNRLRDSLAALWQSIRAVPAAPAAAVASILVVALGVGIFAAGGGVGRGTFSSTGGSPA
Ga0307479_10021386103300031962Hardwood Forest SoilVSQNDDELELQALERQLDDAFQTTRPRPAFEDELWLRVQSSRPAQRRFRDALAAFWNGIREVPAVPATATALVLIVAIGVGIVAVNGLGHGGGGASSSGVERAA
Ga0307479_1118282613300031962Hardwood Forest SoilVSDREDVELQALQRQLDDAFETTRPRRGFEDELWLRMQTRRPFLVRMQDGFAGLFQAIREAPAVPAAAIAALLVVAIGVGIVRLGTGGAGGGSESTTNL
Ga0307471_10170216113300032180Hardwood Forest SoilVSQDDEELQLQALDRQLEDAFQTTRPRPDFEDELWLRLESSRPAPRRLRDAIAAFWNGVREVPAVPATATALVLSVAI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.