Metagenome / Metatranscriptome Family F045784

Overview

Basic Information

• Family ID: F045784
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 152
• Average Sequence Length: 41 residues
• Representative Sequence: PLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDSEQ
• Number of Associated Samples: 146
• Number of Associated Scaffolds: 152

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 1.36 %
• % of genes near scaffold ends (potentially truncated): 94.74 %
• % of genes from short scaffolds (< 2000 bps): 94.08 %
• Associated GOLD sequencing projects: 139
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (82.895 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (7.237 % of family members)
• Environment Ontology (ENVO): Unclassified (16.447 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (46.711 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 16.42%
  β-sheet: 0.00%
  Coil/Unstructured: 83.58%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF01695	IstB_IS21	93.42
PF00589	Phage_integrase	1.32
PF13620	CarboxypepD_reg	0.66
PF16793	RepB_primase	0.66
PF05717	TnpB_IS66	0.66
PF00702	Hydrolase	0.66

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	93.42
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.66

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.89 %
Unclassified	root	N/A	17.11 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.89 %
Unclassified	root	N/A	17.11 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.89 %
Unclassified	root	N/A	17.11 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	67.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.24 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.66 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.66 %
Unclassified	root	N/A	17.11 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15.13 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.66 %
Unclassified	root	N/A	17.11 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	52.63 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.66 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.63 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.66 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	14.47 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.66 %
Unclassified	root	N/A	17.11 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.66 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.66 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.66 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	13.82 %
Unclassified	root	N/A	17.11 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	13.82 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.66 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.66 %
Unclassified	root	N/A	17.11 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	11.18 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.66 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.66 %
Unclassified	root	N/A	17.11 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	0.66 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.66 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.66 %
Unclassified	root	N/A	17.11 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2124908009|FWIRA_GRAM18401DI008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501
3300001159|JGI12650J13346_1004337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661
3300001213|JGIcombinedJ13530_103597094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553
3300002568|C688J35102_120320720	All Organisms → cellular organisms → Bacteria	989
3300004114|Ga0062593_102018800	All Organisms → cellular organisms → Bacteria → Proteobacteria	641
3300004152|Ga0062386_101098229	All Organisms → cellular organisms → Bacteria → Proteobacteria	660
3300004156|Ga0062589_101266068	All Organisms → cellular organisms → Bacteria → Proteobacteria	710
3300004633|Ga0066395_10515279	All Organisms → cellular organisms → Bacteria → Proteobacteria	691
3300004778|Ga0062383_10069437	All Organisms → cellular organisms → Bacteria	1439
3300005327|Ga0070658_10600243	Not Available	954

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.79%
Host-Associated	Host-Associated	9.21%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	13.82%
Plants	Host-Associated → Plants	9.21%
Terrestrial	Environmental → Terrestrial	76.97%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	10.53%
Marine	Environmental → Aquatic → Marine	1.32%
Peat	Environmental → Terrestrial → Peat	20.39%
Peat Moss	Host-Associated → Plants → Peat Moss	0.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.92%
Roots	Host-Associated → Plants → Roots	0.66%
Sediment	Environmental → Aquatic → Sediment	1.32%
Soil	Environmental → Terrestrial → Soil	56.58%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.66%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.32%
Ice	Environmental → Aquatic → Freshwater → Ice	0.66%
Lake	Environmental → Aquatic → Freshwater → Lake	1.32%
Loam	Environmental → Terrestrial → Soil → Loam	11.84%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.66%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.66%
Sediment	Environmental → Aquatic → Marine → Sediment	0.66%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.63%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	20.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.32%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.66%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.63%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.66%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.32%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.66%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.66%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.66%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	20.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.32%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.66%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.66%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.66%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.66%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.66%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.66%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.66%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.63%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.24%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.66%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.66%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.66%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.32%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.66%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.66%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.66%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.32%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.66%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.66%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.66%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.66%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.61%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.32%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.29%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.97%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.66%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.66%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.66%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.32%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.61%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.32%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.66%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.66%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.66%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.29%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.66%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.66%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.32%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2124908009	Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2	Environmental
3300001159	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2	Environmental
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIRA_00584360	2124908009	Soil	PALDLSRHPEAQALDVRPHNLETYDELAHPRDDDPEQ
JGI12650J13346_10043372	3300001159	Forest Soil	VDLSRHPQAQSLDVRPHDLETYDELARNKNNNADDRNDEQ*
JGIcombinedJ13530_1035970941	3300001213	Wetland	LSGHPLAQSIDVRPHDLETYDELARTQDNTLDPDQ*
C688J35102_1203207201	3300002568	Soil	PLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDSEQ*
Ga0062593_1020188002	3300004114	Soil	PLPALDLSRHPEAQALDVRPHNLETYDELAHSRDDDPEQ*
Ga0062386_1010982291	3300004152	Bog Forest Soil	PAPLPALDLSRHPEAQALDVRPHDLETYDELAHPHDDDSEQ*
Ga0062589_1012660683	3300004156	Soil	QPCPRRVALDLSHHPQAQSVDVRPHDLETYDELARTEDDDPEP*
Ga0066395_105152792	3300004633	Tropical Forest Soil	SVAFLLRRNQRSSPLPALDLSRHPEAQALEVRPHDLETYDELAHSHDDDSEQ*
Ga0062383_100694373	3300004778	Wetland Sediment	PLPALDLSRHPEAQALDVRPHDLETYDELAHSRDDDPEQ*
Ga0070658_106002431	3300005327	Corn Rhizosphere	VCCFVAARPQQRITPRLAVDLSRHPEAQSIEVRPHDLETYDELAHN
Ga0070682_1020226681	3300005337	Corn Rhizosphere	PLPAVDLSRHPEAQALDVRPHDLETYDELARTHDDDAES*
Ga0070678_1018748612	3300005456	Miscanthus Rhizosphere	SVAFLLRRRHRSAPLPALDLSRYPEARAMDVRPHNLETYDELAHPRDDDPEQ*
Ga0070679_1013451521	3300005530	Corn Rhizosphere	LLRRQPHSRRLAVDLSGHPEAQSIDVRPHSLETYDELAHPEDDDPEQ*
Ga0066695_108051682	3300005553	Soil	RVALDLSHNPQAQSVDVRPHDLETYDELARTEDDDPKP*
Ga0066699_108954071	3300005561	Soil	PLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDDSEQ*
Ga0070762_101698781	3300005602	Soil	NHAMPLPLDLSRHPEALSLEVRPHDLETYDELAHRRDDEPER*
Ga0070763_102766292	3300005610	Soil	SAPAPMVVDLSRHPEAQAIEVRPHDLETYDELAEHGLDDSEQ*
Ga0070763_104446331	3300005610	Soil	APIAVDLSRHPAAQAIEVRPHDLEIYDELSRNGNDSEQ*
Ga0070764_107519262	3300005712	Soil	VDLDLSRYPEAQSIDVRPHDLETYDELAHTPDDDDSEP*
Ga0068861_1002925614	3300005719	Switchgrass Rhizosphere	RVALDLSHNPQAQSVDVRPHDLETYDELARTEDDDPNPEQ*
Ga0080026_101600092	3300005952	Permafrost Soil	LSLDLSRHPQAMALDIRPHDLETYDELTRTKDDDNDEQ*
Ga0080027_104276151	3300005993	Prmafrost Soil	SAPAPMAVDLSRHPGAQAIEVRPHDLETYDELARNEDDDDDAEQ*
Ga0075026_1007219191	3300006057	Watersheds	DLSHHPDAQSIDIRPHDLETYDELAHSQDDDPDPEQ*
Ga0068871_1005265861	3300006358	Miscanthus Rhizosphere	PRAPRVVLDLSGHPEAQSIDVRPHALETYDELARTQDDDAEQ*
Ga0079218_124972371	3300007004	Agricultural Soil	SSPLPALDLSHHPEAQALDVRPHDLETYDELAHPRDDDSEQ*
Ga0066710_1007959651	3300009012	Grasslands Soil	RSSPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDDSEQ
Ga0105099_106695182	3300009082	Freshwater Sediment	SPLPALDLSRHPEAQALDVRPHDLETYDELAHSRDDDPEQ*
Ga0116217_102712571	3300009700	Peatlands Soil	RQNRSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDPEQ*
Ga0116227_113133102	3300009709	Host-Associated	APMAVDLSRHPEAQAIEVWPHHLETYDELARNNDNDDDSEQ*
Ga0126374_116925712	3300009792	Tropical Forest Soil	ASSVAFLLRRHHRSTPPALDLSRYPEAQALDVRPHDLETYDELAHPRDDNPDQ*
Ga0126384_112499442	3300010046	Tropical Forest Soil	RALVDLSHHPQAQSVDVRPHDLETYDELARPQNDKPKQQ*
Ga0126382_119818882	3300010047	Tropical Forest Soil	TSPLPALDLSRHPEAQALDVRPHNLETYDELAHPRDDDPEQ*
Ga0136449_1009559324	3300010379	Peatlands Soil	SLDLSHHPQAQSLDIRPHDLETYDELARTQDTDNDDEQ*
Ga0136622_102944651	3300012187	Polar Desert Sand	SLDLSHHPQAQSLDIRPHDLETYDELSRTDDNGNDEP*
Ga0137370_107851501	3300012285	Vadose Zone Soil	LLRRNYRASPLPALDLSRHPEAQALGVRPHNLETYDELAHPRDDDPDQ*
Ga0137404_109125191	3300012929	Vadose Zone Soil	RSFLSPSPAVAFLLRRNHRSSPLPALDLSRHPEAQALDVRPHDLETYDERAHARDDDPEQ
Ga0163162_131607102	3300013306	Switchgrass Rhizosphere	AFLLRRQHRSTPLPVLDLSRHPEAQALDVRPHNLETYDELAHPRDPDSE*
Ga0157375_128730892	3300013308	Miscanthus Rhizosphere	LSLDLSRHPEAQSVEVRPHDLEIYDELAHKKDDEQQ*
Ga0181530_103193311	3300014159	Bog	HPRPAPLPALDLSRHPEAQALDVRPHDLETYDELAHPHDDDSE*
Ga0181532_102498151	3300014164	Bog	MVVDLSRHPEAQAIEVRPHDLETYDELARNDNDDNDSGQ*
Ga0181528_105126261	3300014167	Bog	VAFLLRRQHRSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPHDDSEQ*
Ga0167646_10802732	3300015192	Glacier Forefield Soil	TLPALDLSHHPEAQSLDVRTHDLETYDALARTQNNDDDE*
Ga0137409_105408643	3300015245	Vadose Zone Soil	LSHHPQAQSLDIRPHDLEAYDELARNKDTGNDDE*
Ga0182006_11995272	3300015261	Rhizosphere	LRRHHRSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPHNDDSEQ*
Ga0182007_103317151	3300015262	Rhizosphere	PTPLPALDLSRHPEAQALDVRPHDLETYDELAHPHNDDSEQ*
Ga0182032_107219972	3300016357	Soil	FLLRRHHRASPLPALDLSRHPEAQALDVRPHNLETYDELAHARDDDSEQ
Ga0187802_100981253	3300017822	Freshwater Sediment	LRRSQRSSPLPALDLSRHPEAQALDVRPHDLETYDELAHSRDDDSDQ
Ga0187849_11110233	3300017929	Peatland	SPALAVDLSRHPEAQSIEVRPHDLETYDELARHHDDDPDQ
Ga0187853_105184122	3300017940	Peatland	SSVAFLLRRNHRCSPLPALDLSRHPEAQALDVRPHDLETYDELAHSHDDDPEQ
Ga0187879_102433301	3300017946	Peatland	PLPLDLSRHPGAQNLEVRPHDLETYDELAHRRDDEPKR
Ga0187871_108493572	3300018042	Peatland	RSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDDSEQ
Ga0187887_103234151	3300018043	Peatland	KQQRSAPSPMAVDLSRHPAAQAIEVRPHDLETYDELAEHGLDDSEQ
Ga0187765_109935971	3300018060	Tropical Peatland	VAFLLRRGAPGAPRSAPLPALDLSRHPEAQALDVRPHDLETYDELAHPHDDDSE
Ga0190275_124780932	3300018432	Soil	LDLSRHPEAQALDVRPHDLETYDELAHPRDDDSEQ
Ga0066662_114122152	3300018468	Grasslands Soil	LDLSRHPEAQALEVRPHDLETYDELAHPHDDDSEQ
Ga0213872_102944341	3300021361	Rhizosphere	RRQPRVARLALDLSRHPEAQAVEVRPHDLEIYDELARTQDNDSEQ
Ga0210397_100712554	3300021403	Soil	HRSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDSEQ
Ga0210383_104565611	3300021407	Soil	PSALEVDLSRHPEAQSIEVRPHDLETYDELAQTRDDSDESGE
Ga0210394_108918082	3300021420	Soil	APMVVDLSRHPEAQAIEVRPHDLETYDELAEHGLDDSEQ
Ga0210391_107319372	3300021433	Soil	APKVDLSRHPEAQAIDVQPHALETYDELAHHHDDDPDE
Ga0213878_100690663	3300021444	Bulk Soil	QPRTQRLAVDLSGHPEAQSIEVRPHDLETYDELARTPHDDSQQ
Ga0224505_102011941	3300022214	Sediment	QVRRAPHLAVDLSRHPEAEALDIQPHDLETYDELARSPDDDDESGQ
Ga0222622_104929452	3300022756	Groundwater Sediment	LRRHHRSAPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDSEQ
Ga0224529_10117071	3300023247	Soil	APLPLDLSRYPLAQDVHVRSHDLETYDELARNRDKKSKS
Ga0209381_11502602	3300025161	Hot Spring Sediment	PLPALDLSRYPEAQALEVRPHNLETYDELAHPHDDGSEP
Ga0208850_10223263	3300025457	Arctic Peat Soil	RPTLLALDLSGHPLAQSIDVRPHDLETYDELARTPDNTDDPEQ
Ga0208478_10226584	3300025475	Arctic Peat Soil	KVNLSRFPEAQSIDVQPHDLETYDELARHDHDPDE
Ga0209638_10761791	3300025725	Arctic Peat Soil	SLDLSHHPQAQALDIRPHDLETYDELARTQDNGNDEQ
Ga0209014_102807002	3300025857	Arctic Peat Soil	PLMVDLSHHPEAQAIEVQPHDLETYDELAHSDDDPQQ
Ga0207671_105800343	3300025914	Corn Rhizosphere	RHHRSMPLPALDLSRYPEAQALDVRPHDLETYDELAHPRDDDPEQ
Ga0207662_110852742	3300025918	Switchgrass Rhizosphere	ALDLSRHPEAQALDVRPHDLETYDELTHPRDDDSE
Ga0207652_109268902	3300025921	Corn Rhizosphere	LLRRQPHSRRLAVDLSGHPEAQSIDVRPHSLETYDELAHPEDDDPEQ
Ga0207644_113463521	3300025931	Switchgrass Rhizosphere	VLRASSVAFLLRRNHRASLLPALDLSRHLEAQALDVCFHNLETYDELAYPRDDDSEQ
Ga0209880_10819271	3300026271	Soil	DLSHHPEAQSLDVRTHDLETYDALARTQNNDDDSQQ
Ga0209839_102039392	3300026294	Soil	LRRHHRSTPLPALDLSRHPEAQALNVRPHDLETYDELAHPRNDDPEQ
Ga0209801_10948911	3300026326	Soil	LLRRHHRSIPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDDSEQ
Ga0209158_10905681	3300026333	Soil	HHRSIPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDDSEQ
Ga0257172_10347271	3300026482	Soil	KVDLSRHPEAQAIDVQPHDLETYDELAHHHDDDPDE
Ga0255350_10445101	3300026502	Soil	TPLPLDLRRHPQAESVEVRPHDLETYDELAQRRNEEPES
Ga0207782_1057563	3300026835	Tropical Forest Soil	PTLDLSRHPEAQAMDVRPHNLETYDELAHTHDDEPEQ
Ga0207821_10159802	3300026869	Tropical Forest Soil	HRSAPLPTLDLSRHPEAQAMDVRPHNLETYDELAHTHDDEPEQ
Ga0209525_10993561	3300027575	Forest Soil	RATPLSLDLSHHPQAQALDIQPHDLETYDKLTRTKDDDNDEP
Ga0207826_11679182	3300027680	Tropical Forest Soil	TAPLPLDLRRHPQAECVEVRPHDLETYDELAQRHDEEPES
Ga0209464_101439231	3300027778	Wetland Sediment	RSQLVAVDLSHHPIAQSVDVRPHNLETYDELANHHKKEPGE
Ga0209180_100586851	3300027846	Vadose Zone Soil	LDLSRHPEAQALDVRPHDLETYDELAHPHDDDSEH
Ga0209693_102133172	3300027855	Soil	RSAPAPMVVDLSRHPEAQAIEVRPHDLETYDELAEHGLDDSEQ
Ga0209167_104378082	3300027867	Surface Soil	DLSHHPQAQSLDIRPHDLETYDELARTQDTDNDDEQ
Ga0209283_101768601	3300027875	Vadose Zone Soil	RRRHRSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPHDDDSEQ
Ga0209169_105184771	3300027879	Soil	QPRPPRVDLDLSRYPEAQSIDVRPHDLETYDELAHTPDDDDSEP
Ga0265334_100867482	3300028573	Rhizosphere	MAVDLSRHPEAQAIEVRPHDLETCDELARNNNDNEQ
Ga0302166_101355761	3300028652	Fen	QHRSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDSEQ
Ga0302266_102385142	3300028779	Bog	FLLRQRHRSAPLPLDLSRYPLAQDVHVRSHDLETYDELARNRDKKSKS
Ga0302228_102663912	3300028808	Palsa	LDLSRHPEAQSLEVRPHDLETYDELAHRRDDEPER
Ga0302268_10984422	3300028854	Bog	LDLSRHPEAQNLEVRPHDLETYDELAHRRDDEPER
Ga0302199_10631903	3300028860	Bog	APLPLDLRRHPQAESVEVRPHDLETYDELAQRHDEDPEPES
Ga0308309_105862973	3300028906	Soil	RRQNRSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPHDDDSEQ
Ga0222749_101171221	3300029636	Soil	RQHRSTPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDHSEQ
Ga0247271_1208572	3300029903	Soil	LSRHPEAQAIEVRPHNLETYDELARKDGDDDNSEQ
Ga0311361_105237534	3300029911	Bog	PAPMAVDLSHHPEAQAIEVRPHDLETYDELAHNDADDDDSEQ
Ga0311361_111026681	3300029911	Bog	LDLSHHPEAQSINVRPHDLEIYDELTRTQDDDPES
Ga0311359_100514327	3300029914	Bog	LPLDLRRHPQAESVEVRPHDLETYDELAQRRDEEPES
Ga0302190_100997404	3300029988	Bog	DLSRHPEAQNLDVRPHDLETYDELAHRRDDDEPER
Ga0311365_114967741	3300029989	Fen	RRQQRSAPARVAVDLSRHPEAQSIDVRPHDLETYDALARSRDDDEPDE
Ga0311344_107025261	3300030020	Bog	LDLSRHPQAQNLNVRAHDLETYDELAHNHDKKSKS
Ga0302274_101325353	3300030041	Bog	DLRRHPQAENVEVRPHDLETYDELAQRHDEDPEPES
Ga0302177_101436623	3300030053	Palsa	PLPLDLSRHPEAQSLEVRPHDLETYDELAHRRDDEPER
Ga0302182_103876961	3300030054	Palsa	AFLLRQSDSVTPLPLDLSRHPEAQSLEVRPHDLETYDELAHRRDDEPER
Ga0302179_104483051	3300030058	Palsa	FLLRQSDSVTPLPLDLSRHPEAQSLEVRPHDLETYDELAHRRDDEPER
Ga0311349_116399751	3300030294	Fen	PAPLMVDLSHHPEAQAIEVQPHDLETYDELAHSDDDPQQ
Ga0311353_103886233	3300030399	Palsa	LDLSRYPQAQNLNVRPHDLETYDELAHSRDKQSKS
Ga0311355_106761741	3300030580	Palsa	DLSHHPEAQSVEVRPHDLEIYDELARTQDDDDSEQ
Ga0299913_109353861	3300031229	Soil	PLPALDLSRHPEAQALNVRPHDLETYDELAHPHDDDSEQ
Ga0170824_1010872861	3300031231	Forest Soil	FLLRRHHRSAPPALDLSRYPEAQALDVRPHDLETYDELAHPRDDDSEQ
Ga0302324_1028657981	3300031236	Palsa	LDLSHHPQAQALDIRPHDLETYDELARTKDDDNDEQ
Ga0265329_102925392	3300031242	Rhizosphere	LAVDLSRHPEAQSVDVRPHKLESYDELARNPDDDPEQ
Ga0302318_103902372	3300031258	Bog	RQARPSTLLAVDLSRHPQAQAIDVRTHDLETYDELAHPHHDDPKH
Ga0307506_100662443	3300031366	Soil	HRSTPLPTLDLSRHPEAQALDVRPHDLETYDELAHPRDDDSEQ
Ga0170820_168953551	3300031446	Forest Soil	VAFLLRRHHRSVPLPALDLSRHPEAQALDVRPHDLETYDELTHPRDDDSE
Ga0318538_101532213	3300031546	Soil	FLLRRHHRSAPPPALDLSRHPEAQALDVRPHDLETYDELAHSRDDDPEQ
Ga0302321_1018735361	3300031726	Fen	PPAVDLSRHPDAQAVEVRPHDLEVYDELARTKDDSAE
Ga0306918_113444511	3300031744	Soil	SAPLPALDLSRHPEAQALDVRPHDLETYDELAHSRDDDPEQ
Ga0307475_102907163	3300031754	Hardwood Forest Soil	RQLRSTSPRLAVDLSRHPEAQSIDVRPHDLETYDELARNRDDDPDQ
Ga0302319_108874202	3300031788	Bog	AVDLSRHPRAQAVDVRPHDLETYDELARTGKITDDPDR
Ga0306919_113954752	3300031879	Soil	PLPALDLSRHPEAQALDVRPHDLETYDELANSRDDDSEQ
Ga0306923_122507311	3300031910	Soil	VDLSRHPQAQAIDVRPHNLETYDELARPHDDDPEE
Ga0306921_104789333	3300031912	Soil	PLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDSE
Ga0306921_115318591	3300031912	Soil	RRHHRSVPRPALDLSRHPEAQALEVRPHDLETYDELAHPHDDDSEQ
Ga0306921_121287672	3300031912	Soil	LLRRNQRSASLPALDLSRHPEAQALDVRPHNLETYDELAHPRDHDPEQ
Ga0311367_106175563	3300031918	Fen	HRSTPLPALDLSRHPEAQALNVRPHDLETYDELAHSRNDDPEQ
Ga0310912_109118263	3300031941	Soil	SPPRLAVDLSHNPVAQSVDVRPHDLETYDELAHNRKRSRD
Ga0310910_103137501	3300031946	Soil	LPALDLSRHPEAQALDVRPHDLETYDELAHSRDDDPEQ
Ga0306924_114308002	3300032076	Soil	PALDLSRHPEAQALEVRPHDLETYDELAHPHDDDSEQ
Ga0306924_121204892	3300032076	Soil	PALDLSRHPEAQALDVRPHNLETYDELAHPRDDDPDQ
Ga0315295_119177432	3300032156	Sediment	VRLPAVDLSRHPEAQALDVRPHDLETYDELANPHDDDAEP
Ga0311301_124514291	3300032160	Peatlands Soil	SLDLSHHPQAQSLDIRPHDLETYDELARTQDTDNDDEQ
Ga0315268_113722193	3300032173	Sediment	PRAPRIALDLSRHPEAQSIDVRPHDLETYDDLARTQDDDPEQ
Ga0335085_112005341	3300032770	Soil	SVAFLLRRNHRASPLPALDLSRHPEAQALDVRPHDLETYDELAHPRDDDPEQ
Ga0335079_117809371	3300032783	Soil	LPAVDLSRHPEAQALDVRPHDLETYDELARSHDDDAES
Ga0335074_104985563	3300032895	Soil	ALDLSRHPEAQALNVRPHNLETYDELAHPRDDDPDH
Ga0335076_107900672	3300032955	Soil	RRNHRSSPLPVLDLSRHPEAQALDVRPHDLETYDELAHSHDDDPEQ
Ga0335084_104600821	3300033004	Soil	RREQRSSPLPVLDLSHHPEAQALDVRPHDLETYDELAHPLDDSQQ
Ga0335077_102764864	3300033158	Soil	PRLAVDLSRHPEAQSVEVRPRDLETYDELARHRDDDSDN
Ga0335077_110656721	3300033158	Soil	LLRRHQRSAPLPALDLSRHPEAQAMDVRPHDLETYDELAHSRDDDTGQ
Ga0326728_107856172	3300033402	Peat Soil	LLLDLRRHPQAESVEVRPHDLETYDELAQRGDEELES
Ga0316625_1022963982	3300033418	Soil	SVAFLLRQAPRSTPLPALDLSRHPEARALDVRPHDLETYDELARHRDDDSEQ
Ga0316628_1033168001	3300033513	Soil	RLALDLSHHPEAQAVEVRPHDLEIYDELARTQDDDDSPK
Ga0371490_11429101	3300033561	Peat Soil	DLSRHPEAQSIEVRPHDLETYDELAHNHDDDQSDE
Ga0334848_031571_746_859	3300033827	Soil	MPLDLRRHPQAESVEVRPHDLETYDELAQRRDDEPES
Ga0334790_205866_3_134	3300033887	Soil	SNSVTPLPLDLSRHPEAQSLEVRPHDLETYDELAHRRDDEPER
Ga0334811_149777_217_336	3300033891	Soil	MPLDLRRHPQAESVEVRPHDLETYDELAQRHDEDPEPES
Ga0334827_080502_1006_1113	3300034065	Soil	LDLRRHPQAESVEVRPHDLETYDELAQRRDDEPES
Ga0372943_0944554_463_573	3300034268	Soil	ALDLSRHPEAQALDVRPHDLATYDGLAHRSDDDAEQ