NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F045332

Metagenome / Metatranscriptome Family F045332

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F045332
Family Type Metagenome / Metatranscriptome
Number of Sequences 153
Average Sequence Length 39 residues
Representative Sequence YGTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK
Number of Associated Samples 131
Number of Associated Scaffolds 153

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.35 %
% of genes from short scaffolds (< 2000 bps) 89.54 %
Associated GOLD sequencing projects 125
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.346 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(19.608 % of family members)
Environment Ontology (ENVO) Unclassified
(27.451 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.673 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.78%    β-sheet: 5.97%    Coil/Unstructured: 49.25%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 153 Family Scaffolds
PF07549Sec_GG 92.16
PF02699YajC 3.92
PF02472ExbD 1.31
PF07626PSD3 0.65
PF02355SecD_SecF 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 153 Family Scaffolds
COG0341Preprotein translocase subunit SecFIntracellular trafficking, secretion, and vesicular transport [U] 92.81
COG0342Preprotein translocase subunit SecDIntracellular trafficking, secretion, and vesicular transport [U] 92.81
COG1862Protein translocase subunit YajCIntracellular trafficking, secretion, and vesicular transport [U] 3.92
COG0848Biopolymer transport protein ExbDIntracellular trafficking, secretion, and vesicular transport [U] 1.31


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.35 %
UnclassifiedrootN/A0.65 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003370|JGI26337J50220_1032094All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300004092|Ga0062389_100333590All Organisms → cellular organisms → Bacteria1603Open in IMG/M
3300005171|Ga0066677_10034463All Organisms → cellular organisms → Bacteria2448Open in IMG/M
3300005176|Ga0066679_10916927All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300005177|Ga0066690_10832852All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300005177|Ga0066690_11011447All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300005332|Ga0066388_102136337All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300005332|Ga0066388_103841513All Organisms → cellular organisms → Bacteria → Acidobacteria766Open in IMG/M
3300005343|Ga0070687_100632443All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300005921|Ga0070766_11110006All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300006050|Ga0075028_100173932All Organisms → cellular organisms → Bacteria1150Open in IMG/M
3300006059|Ga0075017_101081134All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300006172|Ga0075018_10646112All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium567Open in IMG/M
3300006173|Ga0070716_100701510All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium773Open in IMG/M
3300006176|Ga0070765_100389647All Organisms → cellular organisms → Bacteria → Acidobacteria1299Open in IMG/M
3300006755|Ga0079222_10271786All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300006791|Ga0066653_10713077All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300006800|Ga0066660_10679818All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium849Open in IMG/M
3300006893|Ga0073928_10561640All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium810Open in IMG/M
3300006903|Ga0075426_10773898All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300007076|Ga0075435_102046351All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300007255|Ga0099791_10048214All Organisms → cellular organisms → Bacteria1904Open in IMG/M
3300007265|Ga0099794_10514391All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300007265|Ga0099794_10691779All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300009012|Ga0066710_104333345All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium530Open in IMG/M
3300009088|Ga0099830_10634792All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium877Open in IMG/M
3300009088|Ga0099830_10945978All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium713Open in IMG/M
3300009088|Ga0099830_11682120All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300009089|Ga0099828_10726295All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium891Open in IMG/M
3300009089|Ga0099828_10794377All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium848Open in IMG/M
3300009089|Ga0099828_11294139All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300009176|Ga0105242_10289625All Organisms → cellular organisms → Bacteria1490Open in IMG/M
3300009683|Ga0116224_10466141All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300010047|Ga0126382_10505638All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis972Open in IMG/M
3300010048|Ga0126373_12933864All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium532Open in IMG/M
3300010304|Ga0134088_10031077All Organisms → cellular organisms → Bacteria → Acidobacteria2409Open in IMG/M
3300010358|Ga0126370_11509854All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300010360|Ga0126372_11201963All Organisms → cellular organisms → Bacteria → Acidobacteria782Open in IMG/M
3300010361|Ga0126378_10981795All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis949Open in IMG/M
3300010376|Ga0126381_103497477All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300010398|Ga0126383_11010407All Organisms → cellular organisms → Bacteria920Open in IMG/M
3300011120|Ga0150983_12945438All Organisms → cellular organisms → Bacteria1404Open in IMG/M
3300011120|Ga0150983_12976803All Organisms → cellular organisms → Bacteria1276Open in IMG/M
3300011271|Ga0137393_10308567All Organisms → cellular organisms → Bacteria1348Open in IMG/M
3300011271|Ga0137393_10312996All Organisms → cellular organisms → Bacteria1338Open in IMG/M
3300012096|Ga0137389_10375991All Organisms → cellular organisms → Bacteria1211Open in IMG/M
3300012096|Ga0137389_10432393All Organisms → cellular organisms → Bacteria1126Open in IMG/M
3300012198|Ga0137364_10577029All Organisms → cellular organisms → Bacteria847Open in IMG/M
3300012208|Ga0137376_11463430All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300012361|Ga0137360_10212683All Organisms → cellular organisms → Bacteria1571Open in IMG/M
3300012377|Ga0134029_1180203All Organisms → cellular organisms → Bacteria1105Open in IMG/M
3300012389|Ga0134040_1242450All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis535Open in IMG/M
3300012917|Ga0137395_11267498All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300012922|Ga0137394_10355459All Organisms → cellular organisms → Bacteria1250Open in IMG/M
3300012924|Ga0137413_10028711All Organisms → cellular organisms → Bacteria → Acidobacteria3028Open in IMG/M
3300012927|Ga0137416_10960174All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300012931|Ga0153915_12115862All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium659Open in IMG/M
3300012971|Ga0126369_10195340All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1946Open in IMG/M
3300014151|Ga0181539_1112769All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1127Open in IMG/M
3300015051|Ga0137414_1131231All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300015051|Ga0137414_1149280All Organisms → cellular organisms → Bacteria2210Open in IMG/M
3300015054|Ga0137420_1190117All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300016270|Ga0182036_11232318All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300016319|Ga0182033_11203599All Organisms → cellular organisms → Bacteria679Open in IMG/M
3300016341|Ga0182035_11084726All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium712Open in IMG/M
3300016357|Ga0182032_10254157All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1367Open in IMG/M
3300017942|Ga0187808_10135059All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300018060|Ga0187765_11155673All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300018088|Ga0187771_11286624All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300018433|Ga0066667_12123902All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis520Open in IMG/M
3300019788|Ga0182028_1381768All Organisms → cellular organisms → Bacteria1851Open in IMG/M
3300020140|Ga0179590_1014350All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1773Open in IMG/M
3300020579|Ga0210407_10295182All Organisms → cellular organisms → Bacteria1265Open in IMG/M
3300020581|Ga0210399_10035183All Organisms → cellular organisms → Bacteria → Acidobacteria4008Open in IMG/M
3300020582|Ga0210395_10513116All Organisms → cellular organisms → Bacteria902Open in IMG/M
3300020582|Ga0210395_10885219All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300021168|Ga0210406_11178103All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300021178|Ga0210408_10093643All Organisms → cellular organisms → Bacteria → Acidobacteria2359Open in IMG/M
3300021401|Ga0210393_11355177All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300021405|Ga0210387_10288844All Organisms → cellular organisms → Bacteria1441Open in IMG/M
3300021406|Ga0210386_10120964All Organisms → cellular organisms → Bacteria → Acidobacteria2165Open in IMG/M
3300021432|Ga0210384_10573231All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1015Open in IMG/M
3300021474|Ga0210390_10117262All Organisms → cellular organisms → Bacteria2229Open in IMG/M
3300021474|Ga0210390_11285059All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300021475|Ga0210392_10619126All Organisms → cellular organisms → Bacteria804Open in IMG/M
3300021476|Ga0187846_10269753All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300021477|Ga0210398_10791348All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300021478|Ga0210402_10253975All Organisms → cellular organisms → Bacteria1624Open in IMG/M
3300021855|Ga0213854_1014681All Organisms → cellular organisms → Bacteria1126Open in IMG/M
3300022530|Ga0242658_1116663All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300022711|Ga0242674_1051144All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300022717|Ga0242661_1111611All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300022726|Ga0242654_10025728All Organisms → cellular organisms → Bacteria1493Open in IMG/M
3300024325|Ga0247678_1063730All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300024330|Ga0137417_1280630All Organisms → cellular organisms → Bacteria1532Open in IMG/M
3300025899|Ga0207642_10839136All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300025961|Ga0207712_11762897All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300025961|Ga0207712_11792204All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300026285|Ga0209438_1041612All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1521Open in IMG/M
3300026315|Ga0209686_1085388All Organisms → cellular organisms → Bacteria1112Open in IMG/M
3300026319|Ga0209647_1214304All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300026332|Ga0209803_1234772All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300026334|Ga0209377_1100749All Organisms → cellular organisms → Bacteria1198Open in IMG/M
3300026376|Ga0257167_1040449All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300026538|Ga0209056_10020432All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6471Open in IMG/M
3300026540|Ga0209376_1072223All Organisms → cellular organisms → Bacteria1871Open in IMG/M
3300026551|Ga0209648_10083262All Organisms → cellular organisms → Bacteria → Acidobacteria2664Open in IMG/M
3300026551|Ga0209648_10429854All Organisms → cellular organisms → Bacteria838Open in IMG/M
3300026557|Ga0179587_10573047All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium742Open in IMG/M
3300027460|Ga0207506_1004358All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300027562|Ga0209735_1142046All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300027729|Ga0209248_10109581All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300027846|Ga0209180_10272904All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300027862|Ga0209701_10131838All Organisms → cellular organisms → Bacteria1539Open in IMG/M
3300027862|Ga0209701_10691057All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium527Open in IMG/M
3300027867|Ga0209167_10798777All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300028573|Ga0265334_10116948All Organisms → cellular organisms → Bacteria955Open in IMG/M
3300028906|Ga0308309_11890886All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300030618|Ga0311354_10220789All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2011Open in IMG/M
3300030707|Ga0310038_10243750All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium835Open in IMG/M
3300030738|Ga0265462_12388979All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300030879|Ga0265765_1000905All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales2595Open in IMG/M
3300030940|Ga0265740_1012239All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300031231|Ga0170824_100645526All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300031546|Ga0318538_10149903All Organisms → cellular organisms → Bacteria1232Open in IMG/M
3300031590|Ga0307483_1022926All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300031590|Ga0307483_1035183All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300031668|Ga0318542_10663217All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300031708|Ga0310686_103473405All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5054Open in IMG/M
3300031718|Ga0307474_10242195All Organisms → cellular organisms → Bacteria1380Open in IMG/M
3300031753|Ga0307477_10178445All Organisms → cellular organisms → Bacteria1480Open in IMG/M
3300031753|Ga0307477_10281128All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1150Open in IMG/M
3300031753|Ga0307477_10383922All Organisms → cellular organisms → Bacteria963Open in IMG/M
3300031754|Ga0307475_10072551All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2634Open in IMG/M
3300031754|Ga0307475_10376902All Organisms → cellular organisms → Bacteria1140Open in IMG/M
3300031754|Ga0307475_10607837All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300031795|Ga0318557_10272462All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium776Open in IMG/M
3300031820|Ga0307473_10139683All Organisms → cellular organisms → Bacteria1361Open in IMG/M
3300031823|Ga0307478_10771290All Organisms → cellular organisms → Bacteria805Open in IMG/M
3300031833|Ga0310917_10593459All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300031879|Ga0306919_10070179All Organisms → cellular organisms → Bacteria → Acidobacteria2384Open in IMG/M
3300031945|Ga0310913_10380192All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1001Open in IMG/M
3300031946|Ga0310910_10416734All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1064Open in IMG/M
3300031962|Ga0307479_10288388Not Available1622Open in IMG/M
3300032044|Ga0318558_10487382All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium615Open in IMG/M
3300032059|Ga0318533_10759678All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium711Open in IMG/M
3300032180|Ga0307471_100796608All Organisms → cellular organisms → Bacteria1112Open in IMG/M
3300032180|Ga0307471_100908749All Organisms → cellular organisms → Bacteria1048Open in IMG/M
3300032261|Ga0306920_102332912All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300032782|Ga0335082_11349377All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium582Open in IMG/M
3300032954|Ga0335083_11139529All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300033158|Ga0335077_10487518All Organisms → cellular organisms → Bacteria1306Open in IMG/M
3300033402|Ga0326728_10181537All Organisms → cellular organisms → Bacteria → Acidobacteria2174Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil19.61%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil18.95%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil9.15%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.88%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.23%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.92%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.96%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.96%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.96%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.31%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.31%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.31%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.31%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.31%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.65%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.65%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.65%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.65%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.65%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.65%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.65%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.65%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.65%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.65%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.65%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.65%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.65%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.65%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003370Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012377Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012389Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019788Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020140Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021855Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022711Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022717Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026376Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-BEnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027460Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-C (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028573Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaGHost-AssociatedOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300030738Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assemblyEnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030940Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031590Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI26337J50220_103209413300003370Bog Forest SoilGTVSGIDGDSLILKISAEPPVKIRISRTAIAQVEASQDAK*
Ga0062389_10033359023300004092Bog Forest SoilGGIYGTINGIDGETVILKIADTGSAPVKIRIARSAITQVEASEDAK*
Ga0066677_1003446333300005171SoilTGSGIYGTISGIDGDAVIMKISSEPQVKIRIARAAIAQVEAPENAK*
Ga0066679_1091692713300005176SoilYGTVNGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0066690_1083285213300005177SoilSGIYGTISGIDGDSVIMKISSEPQVKIRIARAAIAQVETSEDAK*
Ga0066690_1101144723300005177SoilGIYGVINGIDGDTVILKIADTGSSPVKIRVARSAITQVEASEDAK*
Ga0066388_10213633723300005332Tropical Forest SoilGIYGTVNGFDGEVVILRIAEQVKIRISRSAIAQVEATEDAK*
Ga0066388_10384151323300005332Tropical Forest SoilGIYGTINGIDGDTIILKIADNVKIRVARAAIGQVEASEDAK*
Ga0070687_10063244323300005343Switchgrass RhizosphereNGGIYGTINGIDGDTVILKIADTGSSPVKIRIARSAITQVEATEDAK*
Ga0070766_1111000613300005921SoilINGIDGDSVILKISAEPQVKIRVARAAIAQVEASEDAK*
Ga0075028_10017393213300006050WatershedsGTINGIDGDTIILKIADQVKIRVARAAIAQVEASEDAKT*
Ga0075017_10108113423300006059WatershedsVINGFDGDTVILKIADSGSSPVKIRIARSAITQVETTEDAK*
Ga0075018_1064611223300006172WatershedsSGMDGETVILKIAEQVKIRIARSAIVQVEASQDAS*
Ga0070716_10070151023300006173Corn, Switchgrass And Miscanthus RhizosphereDTVILKIADTGSSAVKIRIARSAITQVEAPEDAK*
Ga0070765_10038964713300006176SoilYGTVNGMDGDTVILKIADNVKIRIARAAIAQVEASDDAK*
Ga0079222_1027178623300006755Agricultural SoilTGSGIYGTISGIDGEAVILKISSEPQVKIRIARAAIAQVETQEDAK*
Ga0066653_1071307723300006791SoilNGIDGDSVILKISAEPQVKIRISRAAIAQVEASQDAK*
Ga0066660_1067981813300006800SoilTVNGIDGDSVILKISSEPQVKIRVARAAIAQVEASEDAK*
Ga0073928_1056164013300006893Iron-Sulfur Acid SpringNGLDGDSVILKIATDPQVKIRVARSAIAQVETPEDAK*
Ga0075426_1077389813300006903Populus RhizosphereYGTINGMDGDTIILKVADNVKIRVARAAIAQVEASEDAK*
Ga0075435_10204635123300007076Populus RhizosphereGSGIYGTVSGIDGESVILKISSEPQVKIRIARAAIAQVETQEDAK*
Ga0099791_1004821423300007255Vadose Zone SoilIYGTVNGIDGDSVILRISSEPQVKIRIARAAIAQVEASEDAK*
Ga0099794_1051439123300007265Vadose Zone SoilGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK*
Ga0099794_1069177913300007265Vadose Zone SoilIYGTINRMDGDTVILKVADNVKIRVARAAIAQVEASDDAK*
Ga0066710_10433334523300009012Grasslands SoilSGMDGDTLILKIADTGSAAVKIRVARSAIAQVEASEDAKS
Ga0099830_1063479223300009088Vadose Zone SoilIYGTISGIDGETVILRIADQVKIRVARSAITQVEETEDAK*
Ga0099830_1094597813300009088Vadose Zone SoilGIYGTINGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0099830_1168212013300009088Vadose Zone SoilITNGGIYGVINGIDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK*
Ga0099828_1072629513300009089Vadose Zone SoilIYGTVNGIDGDSVILKISSEPQVKIRIARAAIAQVEAPEDAK*
Ga0099828_1079437713300009089Vadose Zone SoilGGIYGTVNGIDGDSVILKISSEPQVKIRIARAAIAQVEAPEDAK*
Ga0099828_1129413913300009089Vadose Zone SoilNGMDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK*
Ga0105242_1028962513300009176Miscanthus RhizosphereYGTVNGIDGDTVILKIADQVKIRIARSAIAQVEATEDAK*
Ga0116224_1046614113300009683Peatlands SoilTSGIYGTVNGIDGDTFILKVADNVKIRIARAAIAQVEAPEDAK*
Ga0126382_1050563813300010047Tropical Forest SoilGTVSGIDGDCVIMKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0126373_1293386423300010048Tropical Forest SoilGIDGETVILKIADQVKIRISRAAIAQVEATEDAK*
Ga0134088_1003107713300010304Grasslands SoilGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0126370_1150985413300010358Tropical Forest SoilVNGIDADIIILKIADQVKIRIARSAIAQVEATEDAK*
Ga0126372_1120196313300010360Tropical Forest SoilTSGIYGTINGMDGDTIILKVADNVKIRVARAAIAQVEASEDAK*
Ga0126378_1098179523300010361Tropical Forest SoilISGIDGDAVIMKISSEPQVKIRIARAAIAQVEAQEDAK*
Ga0126381_10349747713300010376Tropical Forest SoilINGIDGDTIILKIADTGSSPVKIRIARAAIAQVEASEDAK*
Ga0126383_1101040713300010398Tropical Forest SoilINGIDGDTIILKIADNVKIRVARAAIGQVEASDDAK*
Ga0150983_1294543823300011120Forest SoilSGIDGDSAILKISSEPQVKIRISRAAIAQVEASEDAK*
Ga0150983_1297680323300011120Forest SoilTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK*
Ga0137393_1030856723300011271Vadose Zone SoilINGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0137393_1031299613300011271Vadose Zone SoilIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0137389_1037599123300012096Vadose Zone SoilGGIYGTVNGLDGDSIILKISSEPQVKIRVARAAIAQVEALEDAK*
Ga0137389_1043239313300012096Vadose Zone SoilNGIDGDSVILKISSEPQVKIRIARAAIAQVEAPEDAK*
Ga0137364_1057702913300012198Vadose Zone SoilTINGIDGDSVILKISAEPQVKIRISRAAIAQVEASEDAK*
Ga0137376_1146343023300012208Vadose Zone SoilGIYGTVNGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0137360_1021268323300012361Vadose Zone SoilNGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0134029_118020323300012377Grasslands SoilVNGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0134040_124245013300012389Grasslands SoilTISGLDGDSVIMKISSEPQVKIRVARAAIAQVETSQDAK*
Ga0137395_1126749823300012917Vadose Zone SoilYGTVSGIDGDTVILKIADQVKIRILRSAIAQVEVEENVS*
Ga0137394_1035545923300012922Vadose Zone SoilTINGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK*
Ga0137413_1002871113300012924Vadose Zone SoilGIDGDSVILKISSEPQVKIRISRAAIAQVEASEDAK*
Ga0137416_1096017423300012927Vadose Zone SoilNGIDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK*
Ga0153915_1211586213300012931Freshwater WetlandsTVAGIDGEAVILRIADQVKIRVARSAIAQVEGSENEK*
Ga0126369_1019534023300012971Tropical Forest SoilGTINGMDGDTIILKIADNVKIRIARAAIAQVEASDDAK*
Ga0181539_111276923300014151BogGMDGDTIILKIADNVKIRIARAAIARVEAAEDAAK*
Ga0137414_113123123300015051Vadose Zone SoilIYGTINGMDGDTVILKIADNVKIRIARAAIAQVEASDDAK*
Ga0137414_114928043300015051Vadose Zone SoilWSYQCIDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK*
Ga0137420_119011713300015054Vadose Zone SoilDSVILRISSEPQVKIRIALAAIAAAIAQVEASEDAK*
Ga0182036_1123231813300016270SoilNGLDGDTVILKIADQVKIRVLRSAIAQVEVSEDAK
Ga0182033_1120359913300016319SoilNGLDGDTVILKIADQVKIRILRSAIAQVEASEDAK
Ga0182035_1108472613300016341SoilIYGTINGMDGDTIILKIADNVKIRIARAAIAQVEASDDAK
Ga0182032_1025415723300016357SoilSGIYGTINGMDGDTIILKIADNVKIRIARAAIAQVEASNDAK
Ga0187808_1013505913300017942Freshwater SedimentTSGIYGTINGIDGDTFILKVADNVKIRIARAAIAQVETTEDAK
Ga0187765_1115567323300018060Tropical PeatlandTSGIYGTINGIDGDTIILKIADNVKIRIARAAIGQVEASDDAK
Ga0187771_1128662413300018088Tropical PeatlandSGIYGTVNGMDGDTIILKIADNVKIRIARAAIAQVEAPEDAAK
Ga0066667_1212390223300018433Grasslands SoilYGTISGIDGDSVIMKISSEPQVKIRIARAAIAQVETSEDAK
Ga0182028_138176833300019788FenMAMDGDTIILKIADNVKIRIARAAIAQVEAPQDAAK
Ga0179590_101435013300020140Vadose Zone SoilINGIDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK
Ga0210407_1029518223300020579SoilSGIYGTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK
Ga0210399_1003518313300020581SoilGTINGMDGDTVILKVADNVKIRVARAAIAQVEASDDAK
Ga0210395_1051311613300020582SoilNGFDGETVILKIAEQVKIRIARSAITQVETTEDAK
Ga0210395_1088521923300020582SoilNGIDGDSVILKISTEPQVKIRISRAAIAQVEASEDAK
Ga0210406_1117810323300021168SoilGIYGTINGLDGDTVILKIADQVKIRIARSAISQVETTEDAK
Ga0210408_1009364313300021178SoilNAGIYGTISGIDGETVILKIADTGSSPVKIRIARSAISQVEASEDAK
Ga0210393_1135517723300021401SoilGTINGFDGETVILKIAEQVKIRIARSAITQVETTEDAK
Ga0210387_1028884413300021405SoilIDGDSLILKISAEPPVKIRILRSAIAQVEASEDAK
Ga0210386_1012096413300021406SoilMTSGGIYGVINGFDGDTVILKIADSGSSPVKIRIARSAITQVETPEDAK
Ga0210384_1057323123300021432SoilTNGGIYGVINGIDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK
Ga0210390_1011726213300021474SoilYGTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK
Ga0210390_1128505913300021474SoilGIYGTINGFDGETVILKIADQVKIRIARSAITQVETTEDAK
Ga0210392_1061912613300021475SoilGTINGIDGETVILKIADAGSSPVKIRIARAAIAQVEASEDAK
Ga0187846_1026975313300021476BiofilmVSGLDGDSLILKISNEPQVKIRVARVAIAQVEASEDAK
Ga0210398_1079134813300021477SoilYGTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAN
Ga0210402_1025397513300021478SoilGIYGTINGLDGDTVILKIADQVKIRIARSAITQVETPEDAK
Ga0213854_101468113300021855WatershedsYGTINGIDGDSVILKISSEPQVKIRISRAAIAQVEASEDAK
Ga0242658_111666323300022530SoilGTINGMDGDTVILKIADNVKIRVARAAIAQVEASDDAK
Ga0242674_105114423300022711SoilNSGIYGTINGIDGETVILKIADQVKIRIARSAIAQVEASEDAK
Ga0242661_111161113300022717SoilGIYGVINGFDGDTVILKIADSGSSPVKIRIARSAITQVETPEDAK
Ga0242654_1002572813300022726SoilIYGTINGIDGETVILKIADQVKIRIARSAIAQVEASEDAK
Ga0247678_106373023300024325SoilNGIDGETIILKIADQVKIRIARSAIAQVEASEDAK
Ga0137417_128063023300024330Vadose Zone SoilINGIDGDSVIVKISSEPQVKIRIARAAIAQVEASEDAK
Ga0207642_1083913623300025899Miscanthus RhizosphereIYGTVNGIDGDTVILKIADQVKIRIARSAIAQVEATEDAK
Ga0207712_1176289713300025961Switchgrass RhizosphereVNGIDGDTVILKIADQVKIRIARSAIAQVEATEDAK
Ga0207712_1179220413300025961Switchgrass RhizosphereYGTVNGIDGDTVILKIADQVKIRIARSGIAQVEATEDAK
Ga0209438_104161213300026285Grasslands SoilTVNGIDGDTIILKIADQVKIRIARSAIAQVEASEDAK
Ga0209686_108538813300026315SoilTGSGIYGTISGIDGDAVIMKISSEPQVKIRIARAAIAQVEAPENAK
Ga0209647_121430423300026319Grasslands SoilYGTVNGIDGDTIILKVADQVKIRIARSAIAQVEASEDAK
Ga0209803_123477233300026332SoilGTVNGIDGDTVILKIADQVKIRILRSAIAQVEAEENAS
Ga0209377_110074913300026334SoilIYGTINGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK
Ga0257167_104044913300026376SoilGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK
Ga0209056_1002043213300026538SoilGIDGDSVILKISAEPQVKIRVSRAAIAQVEASEDAK
Ga0209376_107222323300026540SoilSGIDGDSVIMKISSEPQVKIRIARAAIAQVETSEDAK
Ga0209648_1008326233300026551Grasslands SoilYGTINGIDGDSVILKISSEPQVKIRVSRAAIAQVEASEDAK
Ga0209648_1042985413300026551Grasslands SoilIYGTVNGIDGDSVILKISTEPQVKIRIARAAIAQVEASEDAK
Ga0179587_1057304723300026557Vadose Zone SoilYGTINGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK
Ga0207506_100435813300027460SoilGETVILKIADTGSTPVKIRIARSAIAQVEASEDAK
Ga0209735_114204613300027562Forest SoilNSGIYGTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK
Ga0209248_1010958113300027729Bog Forest SoilTINGIDGDTVILKIADTGSAPVKIRIARSAITQVEASEDAK
Ga0209180_1027290423300027846Vadose Zone SoilGVINVMDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK
Ga0209701_1013183823300027862Vadose Zone SoilIYGVINGIDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK
Ga0209701_1069105713300027862Vadose Zone SoilYGTISGIDGETVILRIADQVKIRVARSAITQVEETEDAK
Ga0209167_1079877723300027867Surface SoilGTINAIDGETVILKIADQVKIRIARSAIAQVEASEDAK
Ga0265334_1011694813300028573RhizosphereNGMDGDTVILKIADQVKIRVARVAIAQVEASEDAK
Ga0308309_1189088623300028906SoilGIYGTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK
Ga0311354_1022078923300030618PalsaAIDGDAVILKISAEPPVKIRVTRSAIAQVEASEDAK
Ga0310038_1024375013300030707Peatlands SoilGMDGDTIILKIADNVKIRVARAAIAQVEAPEDAAK
Ga0265462_1238897923300030738SoilTINGLDGETVILKIADQVKIRIARSAITQVEASEDAK
Ga0265765_100090513300030879SoilGIYGTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAN
Ga0265740_101223913300030940SoilINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK
Ga0170824_10064552613300031231Forest SoilIYGTINGLDGDSVILKIATDPQVKIRVARSAIAQVETPEDAK
Ga0318538_1014990313300031546SoilGTVNGFDGEVVILRIAEQVKIRIARSAIAQVEATEDAK
Ga0307483_102292623300031590Hardwood Forest SoilNGIDGDSVILKISSEPQVKIRISRAAIAQVEASEDAK
Ga0307483_103518323300031590Hardwood Forest SoilVINGIDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK
Ga0318542_1066321723300031668SoilSGMDGDTVILKIADNVKIRIARAAIAQVEASEDAK
Ga0310686_10347340513300031708SoilGIDGDSLILKISAEPPVKIRISRAAIAQVEASEDAK
Ga0307474_1024219513300031718Hardwood Forest SoilYGTVSGIDGDTVILKIADQVKIRILRSAIAQVEAEENAS
Ga0307477_1017844523300031753Hardwood Forest SoilGIYGVINGIDGDTVILKIADTGSSPVKIRIARSAITQVEASEDAK
Ga0307477_1028112823300031753Hardwood Forest SoilTNGGIYGVINGIDGDTIILKIADTGSSPVKIRIARSAITQVEASEDAK
Ga0307477_1038392213300031753Hardwood Forest SoilNSGIYGTINGIDGETVILKIADQVKIRILRSAIAQVEASEDAK
Ga0307475_1007255113300031754Hardwood Forest SoilVSGIDGDTVILKIADQVKIRILRSAIAQIEAEENAS
Ga0307475_1037690213300031754Hardwood Forest SoilIDGETVILKIADTGSSPVKIRIARSAISQVEAAEDAK
Ga0307475_1060783713300031754Hardwood Forest SoilGTVSGIDGETVILKIADQVKIRILRSAIAQVEAEENAS
Ga0318557_1027246223300031795SoilGTINGMDGDTIILKIADNVKIRVARAAIAQVEASDDAK
Ga0307473_1013968323300031820Hardwood Forest SoilGTVNGIDGDSVILKISSEPQVKIRIARAAIAQVEASEDAK
Ga0307478_1077129023300031823Hardwood Forest SoilIYGTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK
Ga0310917_1059345913300031833SoilNGLDGDTVILKIADQVKIRILRSAIAQVEATEDAK
Ga0306919_1007017933300031879SoilYGTINGMDGDTIILKIADNVKIRIARAAIAQVEASDDGK
Ga0310913_1038019213300031945SoilYGTISGIDGESVIMKISSEPQVKIRIARAAIAQVETSQDAK
Ga0310910_1041673423300031946SoilTINGMDGDTIILKIADNVKIRIARAAIAQVEASDDGK
Ga0307479_1028838813300031962Hardwood Forest SoilGDTVILKIADTGSSPVKIRVARSAITQVEASEDAK
Ga0318558_1048738223300032044SoilGIYGTINGMDGDTIILKIADNVKIRVARAAIAQVEASDDAK
Ga0318533_1075967823300032059SoilINGMDGDTIILKIADNVKIRIARAAIAQVEASDDGK
Ga0307471_10079660813300032180Hardwood Forest SoilINGIDGDSVILKISAEPQVKIRVARAAIAQVEASEDAK
Ga0307471_10090874913300032180Hardwood Forest SoilTINGIDGDTVILKIADQVKIRIARSAIAQVEASEDAK
Ga0306920_10233291213300032261SoilGTINGMDGDTIILKVADNVKIRVARAAIAQVEASEDAK
Ga0335082_1134937723300032782SoilGTINGIDGDTIILKIADNVKIRIARAAIGQVEASDDAK
Ga0335083_1113952923300032954SoilGTVNGIDGDTIILKIADNVKIRIARAAIGQVEASDDAK
Ga0335077_1048751813300033158SoilYGTINGIDGDTIILKVADNVKIRVARAAIGQVEASEDAK
Ga0326728_1018153713300033402Peat SoilSGMDGDTIILKIADNVKIRIARAAIARVEAAEDAAK


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