Metagenome / Metatranscriptome Family F043648

Basic Information
Family ID	F043648
Family Type	Metagenome / Metatranscriptome
Number of Sequences	156
Average Sequence Length	39 residues
Representative Sequence	MATTEDRRGVGGGTEEWRRELYEAAPERQGELFSTISGL
Number of Associated Samples	132
Number of Associated Scaffolds	156

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	21.43 %
% of genes near scaffold ends (potentially truncated)	96.79 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	130
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (72.436 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.231 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.128 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1Perma_A_C_04094670 2INPhiseqgaiiFebDRAFT_1015787421 3INPhiseqgaiiFebDRAFT_1054873381 4JGI10216J12902_1024381602 5A21PFW6_11264321 6F14TB_1003370481 7A20PFW1_10197912 8A1565W1_109926354 9A10PFW1_120216971 10Ga0062594_1018354272 11Ga0066680_101073871 12Ga0066684_110089992 13Ga0066676_106049031 14Ga0070683_1001207911 15Ga0066388_1040445371 16Ga0070665_1019105962 17Ga0066695_101052413 18Ga0066695_107469371 19Ga0066707_108021272 20Ga0066704_102424913 21Ga0066704_102545371 22Ga0066670_106471701 23Ga0070664_1000397647 24Ga0066703_103669762 25Ga0066708_109460412 26Ga0066706_110831312 27Ga0066706_113035232 28Ga0068856_1020777162 29Ga0070702_1002878461 30Ga0068864_1023525921 31Ga0066696_102062581 32Ga0070715_104473761 33Ga0070716_1017962632 34Ga0079220_111650082 35Ga0075425_1015550431 36Ga0075434_1001415751 37Ga0075426_111548791 38Ga0075424_1014169422 39Ga0074063_129897381 40Ga0099828_114750671 41Ga0066709_1007364212 42Ga0114129_117843921 43Ga0075423_123973321 44Ga0105084_10020032 45Ga0126304_100847211 46Ga0126304_102525292 47Ga0126315_107480221 48Ga0126314_100652336 49Ga0126380_114202541 50Ga0126384_108207322 51Ga0134070_102179411 52Ga0134109_101912812 53Ga0134080_101957883 54Ga0134080_106473672 55Ga0134071_107035542 56Ga0134062_101785791 57Ga0134062_102420751 58Ga0134062_107096291 59Ga0126378_125872582 60Ga0126377_101451541 61Ga0134125_120653881 62Ga0105239_103664561 63Ga0134127_127738562 64Ga0136623_101108641 65Ga0137364_110675152 66Ga0137383_108650711 67Ga0137383_113079532 68Ga0137382_100992911 69Ga0137382_109796582 70Ga0137365_105038262 71Ga0137381_107419012 72Ga0137376_116118981 73Ga0137376_116476512 74Ga0137379_101692463 75Ga0137379_102488101 76Ga0137370_107876821 77Ga0137387_112071592 78Ga0137366_102619721 79Ga0137368_102787601 80Ga0137360_106892341 81Ga0150984_1050045812 82Ga0157335_10479332 83Ga0157291_100472762 84Ga0157282_103763111 85Ga0164298_109452771 86Ga0164301_103309763 87Ga0164301_109407962 88Ga0134076_102529281 89Ga0164306_110973192 90Ga0164305_117453501 91Ga0157373_108263921 92Ga0163162_115933161 93Ga0157377_110071941 94Ga0182005_11379262 95Ga0134085_106159661 96Ga0132258_108318443 97Ga0132256_1036079441 98Ga0132257_1002100232 99Ga0132257_1044348982 100Ga0132255_1043229832 101Ga0183260_104210621 102Ga0163161_107760681 103Ga0187776_107428462 104Ga0184605_102436362 105Ga0184605_103936191 106Ga0184611_13383752 107Ga0184618_100069933 108Ga0190270_100280845 109Ga0066669_106901181 110Ga0066669_114282052 111Ga0066669_123257571 112Ga0173479_104142322 113Ga0193704_10023071 114Ga0193704_10397432 115Ga0210381_100028283 116Ga0210381_101493903 117Ga0193719_101467361 118Ga0247792_10180772 119Ga0207647_104248142 120Ga0207699_105047762 121Ga0207649_103863093 122Ga0207649_104421931 123Ga0207646_117590672 124Ga0207694_112555141 125Ga0207670_102378482 126Ga0207669_109031691 127Ga0207704_119166892 128Ga0207651_109706351 129Ga0207702_114396702 130Ga0209686_11453251 131Ga0209059_13043872 132Ga0209577_101474332 133Ga0307321_10759332 134Ga0307293_102976412 135Ga0307303_101065942 136Ga0307301_100331382 137Ga0307319_101386192 138Ga0307318_101382731 139Ga0307320_101610701 140Ga0307320_102991921 141Ga0307282_103910701 142Ga0307305_100760772 143Ga0307305_104115911 144Ga0307292_101696631 145Ga0307292_103556452 146Ga0247825_107771351 147Ga0307310_100637613 148Ga0307312_107356661 149Ga0307289_104981652 150Ga0307308_100292121 151Ga0307308_102433531 152Ga0318516_103765203 153Ga0306923_120178461 154Ga0308176_119185891 155Ga0307416_1038918681 156Ga0310890_113664542
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1Perma_A_C_04094670 2INPhiseqgaiiFebDRAFT_1015787421 3INPhiseqgaiiFebDRAFT_1054873381 4JGI10216J12902_1024381602 5F14TB_1003370481 6A20PFW1_10197912 7A1565W1_109926354 8Ga0066680_101073871 9Ga0066684_110089992 10Ga0066676_106049031 11Ga0070683_1001207911 12Ga0066388_1040445371 13Ga0070665_1019105962 14Ga0066707_108021272 15Ga0066704_102424913 16Ga0066704_102545371 17Ga0070664_1000397647 18Ga0066703_103669762 19Ga0066706_110831312 20Ga0066706_113035232 21Ga0068856_1020777162 22Ga0066696_102062581 23Ga0075423_123973321 24Ga0105084_10020032 25Ga0126304_100847211 26Ga0126304_102525292 27Ga0126315_107480221 28Ga0126380_114202541 29Ga0134109_101912812 30Ga0134080_106473672 31Ga0134062_102420751 32Ga0134062_107096291 33Ga0134127_127738562 34Ga0136623_101108641 35Ga0137364_110675152 36Ga0137383_108650711 37Ga0137382_109796582 38Ga0137365_105038262 39Ga0137381_107419012 40Ga0137376_116118981 41Ga0137368_102787601 42Ga0137360_106892341 43Ga0157335_10479332 44Ga0164301_109407962 45Ga0164305_117453501 46Ga0134085_106159661 47Ga0132256_1036079441 48Ga0183260_104210621 49Ga0187776_107428462 50Ga0184605_102436362 51Ga0190270_100280845 52Ga0066669_106901181 53Ga0207699_105047762 54Ga0207649_104421931 55Ga0207646_117590672 56Ga0209686_11453251 57Ga0307318_101382731 58Ga0307292_103556452 59Ga0247825_107771351 60Ga0307308_100292121 61Ga0306923_120178461 62Ga0308176_119185891
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38. 1Ga0126378_125872582 2Perma_A_C_04094670 3INPhiseqgaiiFebDRAFT_1015787421 4INPhiseqgaiiFebDRAFT_1054873381 5JGI10216J12902_1024381602 6A21PFW6_11264321 7A20PFW1_10197912 8A10PFW1_120216971 9Ga0062594_1018354272 10Ga0066680_101073871 11Ga0066684_110089992 12Ga0066676_106049031 13Ga0066707_108021272 14Ga0066704_102424913 15Ga0066704_102545371 16Ga0066708_109460412 17Ga0066706_113035232 18Ga0068856_1020777162 19Ga0070702_1002878461 20Ga0066696_102062581 21Ga0070716_1017962632 22Ga0079220_111650082 23Ga0075434_1001415751 24Ga0075424_1014169422 25Ga0099828_114750671 26Ga0114129_117843921 27Ga0075423_123973321 28Ga0105084_10020032 29Ga0126304_100847211 30Ga0126304_102525292 31Ga0126315_107480221 32Ga0126380_114202541 33Ga0126384_108207322 34Ga0134070_102179411 35Ga0134109_101912812 36Ga0134080_101957883 37Ga0134080_106473672 38Ga0134071_107035542 39Ga0134062_101785791 40Ga0105239_103664561 41Ga0136623_101108641 42Ga0137364_110675152 43Ga0137383_108650711 44Ga0137383_113079532 45Ga0137382_100992911 46Ga0137382_109796582 47Ga0137365_105038262 48Ga0137381_107419012 49Ga0137379_102488101 50Ga0137387_112071592 51Ga0137366_102619721 52Ga0137368_102787601 53Ga0150984_1050045812 54Ga0157335_10479332 55Ga0157282_103763111 56Ga0164298_109452771 57Ga0164305_117453501 58Ga0157373_108263921 59Ga0163162_115933161 60Ga0157377_110071941 61Ga0134085_106159661 62Ga0132256_1036079441 63Ga0132257_1002100232 64Ga0132257_1044348982 65Ga0183260_104210621 66Ga0163161_107760681 67Ga0190270_100280845 68Ga0066669_106901181 69Ga0193704_10023071 70Ga0210381_100028283 71Ga0210381_101493903 72Ga0207699_105047762 73Ga0207649_104421931 74Ga0207646_117590672 75Ga0209686_11453251 76Ga0209059_13043872 77Ga0209577_101474332 78Ga0307303_101065942 79Ga0307318_101382731 80Ga0307320_102991921 81Ga0307305_104115911 82Ga0307292_103556452 83Ga0247825_107771351 84Ga0307312_107356661 85Ga0307308_100292121 86Ga0307308_102433531 87Ga0318516_103765203 88Ga0306923_120178461 89Ga0308176_119185891 90Ga0307416_1038918681 91Ga0310890_113664542
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.91% β-sheet: 0.00% Coil/Unstructured: 82.09%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 156 Family Scaffolds
PF01923	Cob_adeno_trans	16.67
PF02518	HATPase_c	4.49
PF00512	HisKA	2.56
PF00563	EAL	1.92
PF01391	Collagen	1.92
PF01925	TauE	1.28
PF01642	MM_CoA_mutase	1.28
PF00441	Acyl-CoA_dh_1	1.28
PF00717	Peptidase_S24	0.64
PF02719	Polysacc_synt_2	0.64

COG ID	Name	Functional Category	% Frequency in 156 Family Scaffolds
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	1.92
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	1.92
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	1.92
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	1.92
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.92
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.28
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.28
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.28
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.28
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	1.28

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.44 %
Unclassified	root	N/A	27.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.44 %
Unclassified	root	N/A	27.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.44 %
Unclassified	root	N/A	27.56 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.28 %
Unclassified	root	N/A	27.56 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.64 %
Unclassified	root	N/A	27.56 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.64 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.56 %
Unclassified	root	N/A	27.56 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.64 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.28 %
Unclassified	root	N/A	27.56 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	16.03 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.28 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.64 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.28 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.28 %
Unclassified	root	N/A	27.56 %

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig222935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	974	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101578742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	2978	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105487338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1032	Open in IMG/M
3300000956\|JGI10216J12902_102438160	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300001333\|A21PFW6_1126432	Not Available	608	Open in IMG/M
3300001431\|F14TB_100337048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1466	Open in IMG/M
3300001532\|A20PFW1_1019791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2517	Open in IMG/M
3300001536\|A1565W1_10992635	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300001538\|A10PFW1_12021697	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300005093\|Ga0062594_101835427	Not Available	640	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.49%
Host-Associated	Host-Associated	20.51%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.13%
Plants	Host-Associated → Plants	20.51%
Terrestrial	Environmental → Terrestrial	74.36%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.82%
Sediment	Environmental → Aquatic → Sediment	2.56%
Soil	Environmental → Terrestrial → Soil	74.36%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.13%
Ice	Environmental → Aquatic → Freshwater → Ice	1.28%
Loam	Environmental → Terrestrial → Soil → Loam	6.41%
Sand	Environmental → Terrestrial → Soil → Sand	0.64%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.28%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.64%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.49%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.28%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.28%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.28%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.64%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.64%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.64%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.28%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.21%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.56%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.56%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.28%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.64%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.56%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.28%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.64%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.28%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.28%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.64%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.90%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001532	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-PF 12A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M

Showing 1 to 10 of 132 entries

Previous1 2 3 4 5…14Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_04094670	2124908032	Soil	MATTEDPRSGTSGTDVWLTELYENSPERTGELFSTISGLEN
INPhiseqgaiiFebDRAFT_1015787421	3300000364	Soil	MATTEDPRETTAAERWREELYERAPERQGELFSTMS
INPhiseqgaiiFebDRAFT_1054873381	3300000364	Soil	MATTEDPRARSDEGTAAWKRELYDAKPERQGELFSTISGLEN
JGI10216J12902_1024381602	3300000956	Soil	MATTEDKRGIEGGAEEWKRELFDATPERGDELSSTISGLENEPLYSPEN
A21PFW6_11264321	3300001333	Permafrost	MATTEDPRARSEDDSTAEWKRELYEAKPERGGELFSTISGLEN
F14TB_1003370481	3300001431	Soil	VATTGDRPGIESETDEWRRELYAAAPERQGELFSTI
A20PFW1_10197912	3300001532	Permafrost	MPTTEDPRETTGTEQWRDEFYDAVPERQGELFSTIS
A1565W1_109926354	3300001536	Permafrost	MLSMATTEDPRALSGTEAWRKELYEASPERQGELFSTISGG
A10PFW1_120216971	3300001538	Permafrost	MATTEDPRSLSGTEAWRKELYEASPERQGELFSTISGGE
Ga0062594_1018354272	3300005093	Soil	MATTEDPRAELDSTTEWRRELYDAKPEREGELFSTISGLEN
Ga0066680_101073871	3300005174	Soil	MATTEDPRARSDATAEWKRELYDATPERKGETSSTISGLENEPLYT
Ga0066684_110089992	3300005179	Soil	VATTEEPREVGRDKADWRRELYDAAPEREGELFSTISGLE
Ga0066676_106049031	3300005186	Soil	MATTEDKRGVGGTDDWKRELYDSAAERTGELFSTISGLEND
Ga0070683_1001207911	3300005329	Corn Rhizosphere	MATTEDKRKLGGDDEWRRELYEAAPERQGELFSTISGLEN
Ga0066388_1040445371	3300005332	Tropical Forest Soil	MATTKDPRSLSGTDAWRKELYEASKERQGELFSTISGIDVEPLY
Ga0070665_1019105962	3300005548	Switchgrass Rhizosphere	MATTEPRKHTPTGEWREELYDAVPEREGELFSTISG
Ga0066695_101052413	3300005553	Soil	MATTEDPRARSEDDSTAEWKRGLYDAKPEREGELFSTISGLEN
Ga0066695_107469371	3300005553	Soil	MATTEDPRSLSGTDAWRKELYEASKERQGELFSTI
Ga0066707_108021272	3300005556	Soil	MRLMATTRDEQGLEGGAEEWRRELFEATPEREGELHSTISGLPNDP
Ga0066704_102424913	3300005557	Soil	MATTEDPKAVGGTDDWRRELYEAKPERQGELFSTM
Ga0066704_102545371	3300005557	Soil	VATTEDPRARLTVTDAWRSELYEAAPERQGELFSTI
Ga0066670_106471701	3300005560	Soil	VATTEEPAGLEGNTDEWRRELYEAAPERQGELFSTIS
Ga0070664_1000397647	3300005564	Corn Rhizosphere	MATTEDKRGLEGGVQEWKRELYDATPERTDELSST
Ga0066703_103669762	3300005568	Soil	MATTEDRRDLGGDTEEWRQKLYAAAPERQGELFSTIS
Ga0066708_109460412	3300005576	Soil	MATTEDKREIEGGTEEWKRGLYDATPEREGELSSTISGLENEPLYT
Ga0066706_110831312	3300005598	Soil	MAITEDKRGAEEWRRELYDATPERDSELSSTISGLPNDPLY
Ga0066706_113035232	3300005598	Soil	MATTEDPRAQLDSTAEWKRELYDASRERDGVLFSTISGLENEP
Ga0068856_1020777162	3300005614	Corn Rhizosphere	VTEIEDRRELGGGEEWRRELYEASPEREGELFSTISGLENE
Ga0070702_1002878461	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VTEIEDRRELDGSQEWRRELYQASPEREGELFSTISGLENE
Ga0068864_1023525921	3300005618	Switchgrass Rhizosphere	MATTEDKRQLGGDDEWKRELYEAAPERQGELFSTI
Ga0066696_102062581	3300006032	Soil	MATTEEPREAGTPTEQWREELYETKPERQGELFSTI
Ga0070715_104473761	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MGAVATTGDRPGIESEAEEWRRELYDAAPERQGELF
Ga0070716_1017962632	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSAVATTGDRPGIESEAEEWRRELYDAVPERQGELFSTI
Ga0079220_111650082	3300006806	Agricultural Soil	MATTEPRKQTPTGEWRDELYAASPEREGELFSTISG
Ga0075425_1015550431	3300006854	Populus Rhizosphere	VATTGDRPGIESETDEWRRELYEAAPERQGELFSTI
Ga0075434_1001415751	3300006871	Populus Rhizosphere	VATTEEPAGLEGNTGEWRRELYEAAPERQGELFSTISGLENE
Ga0075426_111548791	3300006903	Populus Rhizosphere	MTRIEDRRELGGSGEWRRELYEASPEREGELFSTISG
Ga0075424_1014169422	3300006904	Populus Rhizosphere	MTRIEDRRELGGSGKWRRELYEASPEREGELFSTISGLEN
Ga0074063_129897381	3300006953	Soil	MATTEDKRGLEGGAGEWKRELYDATPERGDELSSTISGLENEP
Ga0099828_114750671	3300009089	Vadose Zone Soil	MATTEDPRAKASSTDAWRSELYEATPERDGELFSTVS
Ga0066709_1007364212	3300009137	Grasslands Soil	VATTEDRPGVEPGTDEWRRELYEAAPERQGELFST
Ga0114129_117843921	3300009147	Populus Rhizosphere	MATTEDKRGLEGGVDEWKRELYGATPERGDELSSTISG
Ga0075423_123973321	3300009162	Populus Rhizosphere	MAAQMATTEDPKASVDGTAQWREELYEGKPERRGELFS
Ga0105084_10020032	3300009811	Groundwater Sand	VATTEDPEQLTLPGLEAWRQLYDAKPERQGELFST
Ga0126304_100847211	3300010037	Serpentine Soil	MATTEDRAGLSGLAEWRKALYDAGAERQGELFSTISGLDVDPLYTA
Ga0126304_102525292	3300010037	Serpentine Soil	MATTEDRESLQATRVWREDLYARTPERQGELFSTI
Ga0126315_107480221	3300010038	Serpentine Soil	MATTEDGRKLSGLQEWRRQLYEATQERSEELFSTISG
Ga0126314_100652336	3300010042	Serpentine Soil	MATTEDRAGLSGLAEWRRALYEAAAERQGELFSTISGLD
Ga0126380_114202541	3300010043	Tropical Forest Soil	MATTEDPRALTGTDEWRKELYEPSAEREGELFSTIS
Ga0126384_108207322	3300010046	Tropical Forest Soil	MATTEDKRGIEGGAQDWKRELYDATPERADELSSTISGL
Ga0134070_102179411	3300010301	Grasslands Soil	MATTEDPRARSEDDSTAEWKRGLYDAKPEREGELFSTISGVENEP
Ga0134109_101912812	3300010320	Grasslands Soil	MATTEDRLDSTQEWKRDLYEAKPEREGELFSTISGL*
Ga0134080_101957883	3300010333	Grasslands Soil	MATTEDPRSLSGTDAWRKEPYEASKERQGELFSTISGIE
Ga0134080_106473672	3300010333	Grasslands Soil	MADMATTEEPEAGLGGLEEWRRELYDARPEREGVVFST
Ga0134071_107035542	3300010336	Grasslands Soil	MATTEDKRGVEGGADEWRRELYDATPERGDELTSTISGLEN
Ga0134062_101785791	3300010337	Grasslands Soil	VATTEDRPEVESGTGEWRRELYEAAPERQGELFSTISGL
Ga0134062_102420751	3300010337	Grasslands Soil	MATTDPHVGSGTEEWKKELYEAAPERQGELFSTISG
Ga0134062_107096291	3300010337	Grasslands Soil	MATTEDPRAGIDSTREWRRELYEATPERDGELFST
Ga0126378_125872582	3300010361	Tropical Forest Soil	MATTEDRRGVGGGTEEWRRELYEAAPERQGELFSTISGL
Ga0126377_101451541	3300010362	Tropical Forest Soil	MATTEDKRGIEGGAGEWRRELYDATPERGDELTSTISG
Ga0134125_120653881	3300010371	Terrestrial Soil	MATTEDPRARSDSTAEWKRELYEAKPERDGELFSTI
Ga0105239_103664561	3300010375	Corn Rhizosphere	MATTEDKRELGADDEWKRELYEAAPERQGELFSTISGLEN
Ga0134127_127738562	3300010399	Terrestrial Soil	MRSMATAEDKRGVEGGAGEWKRELYDATPERPDELSSTISGLEN
Ga0136623_101108641	3300012045	Polar Desert Sand	VAATEDRQDLDATAEWRRELYDRTPERQGELFSTISG
Ga0137364_110675152	3300012198	Vadose Zone Soil	MAATKDPRARSDSTGEWKRELYAAGEERQGELFTTIS
Ga0137383_108650711	3300012199	Vadose Zone Soil	MATTEDRRDLGGDTEEWRQKLYAAAPERQGELFSTVSGLENEPLYTAETVEI
Ga0137383_113079532	3300012199	Vadose Zone Soil	MATTEDPRSLSGTDEWRRELYDPSGERQGELFSTISGVEN
Ga0137382_100992911	3300012200	Vadose Zone Soil	MATTDPHVGSGTEEWKKELYEAAPERQGELFSTISGLENEP
Ga0137382_109796582	3300012200	Vadose Zone Soil	MATTEDPKAKPDSTEEWRQELYGTKPERQGELFSTISGLENE
Ga0137365_105038262	3300012201	Vadose Zone Soil	VATTEDQPGLRKGTEQWRRELYDAGSERKGELFSTISGLENE
Ga0137381_107419012	3300012207	Vadose Zone Soil	MATTKDPRAELDSTTEWKKELYEAKPEREGELLTTISGLE
Ga0137376_116118981	3300012208	Vadose Zone Soil	MTTTEDRRELGGSDDWRRDLYEAAPERQGELFSTI
Ga0137376_116476512	3300012208	Vadose Zone Soil	VATTGDRPGIESETDEWRRELYEAAPERQGELFSTIS
Ga0137379_101692463	3300012209	Vadose Zone Soil	MATTEDPRARSEESATAEWRRELYDAKPERDGELFST
Ga0137379_102488101	3300012209	Vadose Zone Soil	MATTEDPKAVGGTEEWRRELFDAKPEREGELFSTMSG
Ga0137370_107876821	3300012285	Vadose Zone Soil	LAVATTEEPREVGRDKADWRRELYDPAPEREGELFSTISGLENEPL
Ga0137387_112071592	3300012349	Vadose Zone Soil	MATTADRPEVGGGTEEWKQRLYEATPERQGELFSTIS
Ga0137366_102619721	3300012354	Vadose Zone Soil	MATTEDPRARSEESPTAEWKRELYDAKPEREGELFSTISGLENEPLYASDG
Ga0137368_102787601	3300012358	Vadose Zone Soil	VATTEDRPKQTSGTEQWRQELYEASPERQGELFSTIS
Ga0137360_106892341	3300012361	Vadose Zone Soil	MATTEDPRARSESATGAWKRELYDAKPEREGELFS
Ga0150984_1050045812	3300012469	Avena Fatua Rhizosphere	MATTEDPRSLSKTDAWRKEQYESSPERQGELFSTI
Ga0157335_10479332	3300012492	Arabidopsis Rhizosphere	VATTEDRKELGDSGKWRRELYESAPERQGELFSTISGL
Ga0157291_100472762	3300012902	Soil	MAITEDQQGIEGGADEWKRELYDATPEREGELSSTISGLPNEPLY
Ga0157282_103763111	3300012904	Soil	MATTEDRDSLDATQAWREELYDRTPERQGELFSTIS
Ga0164298_109452771	3300012955	Soil	MRDVATTEDPPGIENGTEEWRRELYAAAPERQGELFSTISG
Ga0164301_103309763	3300012960	Soil	MATTEDKRGLEGGAAEWKRELYDATPERGDELSSTISG
Ga0164301_109407962	3300012960	Soil	MNGHNQLMAKTEDRRDLTRNGEWRRDLYEASPERQGELFSTISG
Ga0134076_102529281	3300012976	Grasslands Soil	VATTGDRPGIESETDEWRRELYKAAPERQGELFSTISG
Ga0164306_110973192	3300012988	Soil	MATTADKRGLEGADEWKRELYDATPERGDELSSTISGLENEPLY
Ga0164305_117453501	3300012989	Soil	MATTEEPQGTTGTDAWREELYEAVPERQGELFSTMSRSENPPLS
Ga0157373_108263921	3300013100	Corn Rhizosphere	MATTEPRKHTPTGEWREELYDAVPEREGELFSTISGI
Ga0163162_115933161	3300013306	Switchgrass Rhizosphere	MATTEDRRELDGDDWRRELYDAAPERQGELFSTISGLE
Ga0157377_110071941	3300014745	Miscanthus Rhizosphere	MATTEDPRETTATDQWREESYGAVPERQGELFSTI
Ga0182005_11379262	3300015265	Rhizosphere	MATTEDPRSLSGTDAWRKELYDALPERQGELFSTISG
Ga0134085_106159661	3300015359	Grasslands Soil	MATTEDRLDSTAEWRRGLYDAKPEREGEVFSTISGLEN
Ga0132258_108318443	3300015371	Arabidopsis Rhizosphere	MATTEDKRELGGDDEWKRELYEAAPERQGELFSTISGL
Ga0132256_1036079441	3300015372	Arabidopsis Rhizosphere	MATTEDRPELAAGVDEWKSGLYDAVAERQGELFSTISGLENEPL
Ga0132257_1002100232	3300015373	Arabidopsis Rhizosphere	MATTEPRKTTPTDAWREEVYEAQPERQGELFSTIGG
Ga0132257_1044348982	3300015373	Arabidopsis Rhizosphere	MATTEDKRGLEGGAAEWKRELYDATPERPDELSSTISGLENE
Ga0132255_1043229832	3300015374	Arabidopsis Rhizosphere	MATTEDRPELAAGVDEWKSGLYDAVSERQGELFSTIS
Ga0183260_104210621	3300017787	Polar Desert Sand	MSGVATTEDPRTSLDGTEAWRQRLYDARPERQGELF
Ga0163161_107760681	3300017792	Switchgrass Rhizosphere	VATTGDRPGTESETEEWRRELYEAAPERQGELFSTISGLE
Ga0187776_107428462	3300017966	Tropical Peatland	VTENRQNQSMATTEDRRELGDWKKTLYDATPERQGELFSTISGLENE
Ga0184605_102436362	3300018027	Groundwater Sediment	VAITEDQQGVEGGAQEWKRELYDATPEREGELSSTISGLPNE
Ga0184605_103936191	3300018027	Groundwater Sediment	MATTEDPRARSEESPTAEWKRELYDAKPEREGELFSTISGLENEPLY
Ga0184611_13383752	3300018067	Groundwater Sediment	MATTEDKRGLEGDAAEWKRELYDATPERGDELSSTISGLENQ
Ga0184618_100069933	3300018071	Groundwater Sediment	MATTEDPRARSEDDSTAAWKRELYEAKPEREGELFST
Ga0190270_100280845	3300018469	Soil	MGHMALTEDRRSLTGMDDWRRELYDATPEREGELSST
Ga0066669_106901181	3300018482	Grasslands Soil	MATTEDPRATDGTAAWKGELYDAKPEREGELFSTISG
Ga0066669_114282052	3300018482	Grasslands Soil	MATTEDPRARSESTAEWKRELYDATPERKGELSSTISGLENEP
Ga0066669_123257571	3300018482	Grasslands Soil	MATTEDPRARADGTAEWKRELYDAKPERQGELFST
Ga0173479_104142322	3300019362	Soil	MAITEDQQGIEGGAEEWKRELYDATPEREGELSSTI
Ga0193704_10023071	3300019867	Soil	MATTEDTRELDDSGRWRRELYDAAPERQGELFSTI
Ga0193704_10397432	3300019867	Soil	MNGHNQRMAKTEDRRDLTGNGEWRRELYEASPEREGEL
Ga0210381_100028283	3300021078	Groundwater Sediment	MNGHNQLMAKTENRRDLTGTGEWRCELYEASPERQGELFSTISGL
Ga0210381_101493903	3300021078	Groundwater Sediment	MATTEDERGLEGGAREWKRELYDATPEREGELSSTISGLPN
Ga0193719_101467361	3300021344	Soil	MNGHNQRMAKTEDRRDLTGNGEWRRELYEASPERQGELFSTISGLE
Ga0247792_10180772	3300022880	Soil	MATTEDRRELGGDDWRRELYDAAPERQGELFSTIS
Ga0207647_104248142	3300025904	Corn Rhizosphere	VATTGDRPGIESETDEWRRELYEAAPERQGELFST
Ga0207699_105047762	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MATTEDPRAHTDGTAEWKRELYDAKPEREGELSTTISAVAALRPRY
Ga0207649_103863093	3300025920	Corn Rhizosphere	MATTEPRKHTPTGEWREELYDAVPERQGELFSTIS
Ga0207649_104421931	3300025920	Corn Rhizosphere	MATTEDPKAEIDGAGEWRRELYEAKPEREGELFSTMSGI
Ga0207646_117590672	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VATTEGQPGVDSGTGEWRRELYEASQERQGELFSTISGLEN
Ga0207694_112555141	3300025924	Corn Rhizosphere	MATTEDKRELGGDDEWKRELYEAAPERQGELFSTIS
Ga0207670_102378482	3300025936	Switchgrass Rhizosphere	MATTEDKRKLGGDDEWRRELYEAAPERQGELFSTISG
Ga0207669_109031691	3300025937	Miscanthus Rhizosphere	MATTEDKRGLEGDAAEWKRELYDATPERGDELTSTISGLENEPL
Ga0207704_119166892	3300025938	Miscanthus Rhizosphere	MATTEDKRGLEGDAAEWKRELYDATPERGDELTSTISGLENEPLYSPE
Ga0207651_109706351	3300025960	Switchgrass Rhizosphere	MATTEDKRQLGGDDEWKRELYEAAPERQGELFSTIS
Ga0207702_114396702	3300026078	Corn Rhizosphere	MATTEDPRAHTDGTAEWKRELYDAKPEREGELSTTISGLE
Ga0209686_11453251	3300026315	Soil	MRRMATTEDPRAKLDGSAEWRRELYDATPERAGELFSTISGL
Ga0209059_13043872	3300026527	Soil	MGSMATTEDPRAGIDSTREWRRELYEATPERSGELFSTISGLE
Ga0209577_101474332	3300026552	Soil	MGAVATTGDRPGIETETDEWRRELYEGAPERQGELFSTISGLEN
Ga0307321_10759332	3300028704	Soil	VATTGDRPGIESETDEWRRELYEAAPERQGELFSTISG
Ga0307293_102976412	3300028711	Soil	MTTTEDRRELGGSDDWRRDLYEAEPERQGELFSTIS
Ga0307303_101065942	3300028713	Soil	MNGHNQRMAKTEDRRDLTGNGEWRRELYEASPEREGELFSTISGLENE
Ga0307301_100331382	3300028719	Soil	VTEIEDRRELGGGEEWRRELYEASPEREGELFSTISGLENEPLYT
Ga0307319_101386192	3300028722	Soil	MATTEDPRARSEDGSTAEWKRELYEATPEREGELFSTISGLENEP
Ga0307318_101382731	3300028744	Soil	VFVDFDGMATTEDRPSALDGIAEWRRQLYEASPERQGELFS
Ga0307320_101610701	3300028771	Soil	MNGHNQRMAKTEDRRDLTGNGEWRRELYEASPEREGELF
Ga0307320_102991921	3300028771	Soil	MAITEDREGLEGGAEEWRRDLYDATPEREGELTSTISGLP
Ga0307282_103910701	3300028784	Soil	MATTEDPRARSEDDSTAEWKRELYDAKPEREGELFSTI
Ga0307305_100760772	3300028807	Soil	VTEIEDRRELGGGEEWRRELYEASPEREGELFSTISGLE
Ga0307305_104115911	3300028807	Soil	MTTTEDRRELGGSDDWRRDLYEAAPERQGELFSTISGL
Ga0307292_101696631	3300028811	Soil	VAITEDQQGVEGGAQEWKRELYDATPEREGELSSTISGLPNEPL
Ga0307292_103556452	3300028811	Soil	MATTEDPRARPEDDSAAEWKRELYEARPEREGELFSTIS
Ga0247825_107771351	3300028812	Soil	VRAVDCARMATTEDPRATNDTEAWRRELYDAVPERQGELF
Ga0307310_100637613	3300028824	Soil	MATTEDPRARADGTAEWKRELYDAKPEREGELFSTISGLEN
Ga0307312_107356661	3300028828	Soil	MATTEDPTAGVDGAGEWRRELYEAKPERQGELFST
Ga0307289_104981652	3300028875	Soil	MATTEDKRGLEGDAAEWKRELYDATPERGDELSSSISGLE
Ga0307308_100292121	3300028884	Soil	MGSMATTEDEREIGGGAGEWKREVYDATPEREGELSS
Ga0307308_102433531	3300028884	Soil	MATTEDRRELGGEEWRKELYDATPERQGELFSTISG
Ga0318516_103765203	3300031543	Soil	MATTEDPRSTTGTGEWRRELYEPSAEREGELFSTISG
Ga0306923_120178461	3300031910	Soil	MATTEDPRSLSGTDAWRSELYESSPERETELSSTIS
Ga0308176_119185891	3300031996	Soil	MATTEDPQAVGDLEEWRRERYDATPERRGELFSTMS
Ga0307416_1038918681	3300032002	Rhizosphere	MATTEDKRGLEDGAEEWKRELYDATPERDGELSSTISGLSN
Ga0310890_113664542	3300032075	Soil	MAITEDQQGIEGGADEWKRELYDATPEREGELSSTISGLPNEPLYS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F043648

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences