NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F042850

Metagenome / Metatranscriptome Family F042850

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F042850
Family Type Metagenome / Metatranscriptome
Number of Sequences 157
Average Sequence Length 89 residues
Representative Sequence VPFTASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAAA
Number of Associated Samples 117
Number of Associated Scaffolds 157

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 64.97 %
% of genes near scaffold ends (potentially truncated) 22.93 %
% of genes from short scaffolds (< 2000 bps) 97.45 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (61.146 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(35.669 % of family members)
Environment Ontology (ENVO) Unclassified
(35.669 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.586 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116
14MG_04800630
2ICChiseqgaiiDRAFT_08155874
3JGI10216J12902_1072157571
4C688J13580_10137502
5Ga0062593_1007659282
6Ga0062593_1010374221
7Ga0062595_1015681892
8Ga0066809_101285672
9Ga0070682_1003647613
10Ga0070709_113640832
11Ga0070662_1011493932
12Ga0070662_1011871883
13Ga0070684_1003278224
14Ga0070684_1004409794
15Ga0070684_1016378841
16Ga0068853_1016462261
17Ga0066705_104519832
18Ga0068854_1003859692
19Ga0068854_1004720131
20Ga0068856_1001072641
21Ga0068856_1004895282
22Ga0070702_1008252391
23Ga0068866_110552742
24Ga0068861_1005586642
25Ga0066656_108984601
26Ga0066652_1013703201
27Ga0066652_1019485382
28Ga0079222_102765173
29Ga0075434_1013890002
30Ga0111539_112162602
31Ga0105245_110477413
32Ga0105245_132232442
33Ga0075418_107734911
34Ga0105243_131445712
35Ga0105241_116177112
36Ga0105241_121330092
37Ga0105248_117998942
38Ga0126313_105554002
39Ga0126313_110219712
40Ga0138514_1000287972
41Ga0137365_101024594
42Ga0137369_103354452
43Ga0137368_103984733
44Ga0137375_101099775
45Ga0137375_109336172
46Ga0137373_105450801
47Ga0157289_103776522
48Ga0157286_100125863
49Ga0157301_104623901
50Ga0157302_105447742
51Ga0164298_103627172
52Ga0164298_112464262
53Ga0164299_108297573
54Ga0164299_114046992
55Ga0164302_102801322
56Ga0164302_117306621
57Ga0164308_104456192
58Ga0164307_101831362
59Ga0164306_102971764
60Ga0164305_120834321
61Ga0157371_112501582
62Ga0157369_111815192
63Ga0157369_119106152
64Ga0157374_112213621
65Ga0157378_114556341
66Ga0163162_124714081
67Ga0182008_105618831
68Ga0173483_106961303
69Ga0132258_122396941
70Ga0132258_128429393
71Ga0132258_131366981
72Ga0132256_1008146831
73Ga0132256_1010897631
74Ga0132257_1003010193
75Ga0132257_1036995641
76Ga0132255_1037881973
77Ga0190266_109836512
78Ga0184604_101008062
79Ga0184605_101346522
80Ga0184608_102116641
81Ga0184620_101087932
82Ga0184621_100570032
83Ga0184621_100657102
84Ga0184619_100607084
85Ga0184619_100889402
86Ga0184619_103319671
87Ga0184617_11278192
88Ga0184618_103097292
89Ga0184624_103505511
90Ga0184609_102567612
91Ga0066667_122966922
92Ga0210381_101659061
93Ga0182009_105931331
94Ga0247794_100809552
95Ga0247794_102969152
96Ga0207642_104127881
97Ga0207699_109639532
98Ga0207687_109004451
99Ga0207687_110387101
100Ga0207690_114135171
101Ga0207706_109391772
102Ga0207706_115344931
103Ga0207702_111219502
104Ga0207702_125121271
105Ga0207641_120071551
106Ga0207675_1006181223
107Ga0247822_115433341
108Ga0307276_100022433
109Ga0307291_10115813
110Ga0307279_100197782
111Ga0307285_100733273
112Ga0307307_101500482
113Ga0307307_101700223
114Ga0307307_102151171
115Ga0307301_100270773
116Ga0307301_100767003
117Ga0307319_100624761
118Ga0307297_102943902
119Ga0307297_103496921
120Ga0307316_101897601
121Ga0307280_101217172
122Ga0307280_103058561
123Ga0307290_100534142
124Ga0307284_101323793
125Ga0307284_103396131
126Ga0307284_104132872
127Ga0307305_103784102
128Ga0307292_103229062
129Ga0307302_101960281
130Ga0307302_102483892
131Ga0307312_104922321
132Ga0307312_104990182
133Ga0307314_102430083
134Ga0307286_101186393
135Ga0307278_100610104
136Ga0307278_102068981
137Ga0307277_100902242
138Ga0307277_101173892
139Ga0307277_101196713
140Ga0307308_105476072
141Ga0307304_101589123
142Ga0307304_103152691
143Ga0247827_100501194
144Ga0247826_113914182
145Ga0308178_10076382
146Ga0308178_10264942
147Ga0308187_101626021
148Ga0307501_100162011
149Ga0308194_101115462
150Ga0310886_106815671
151Ga0310904_110705732
152Ga0307406_115348641
153Ga0308175_1027174541
154Ga0307409_1003504832
155Ga0308176_110985161
156Ga0310906_108097351
157Ga0310890_109964341
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.42%    β-sheet: 20.34%    Coil/Unstructured: 54.24%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090VPFTASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAAASequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
61.1%38.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Serpentine Soil
Soil
Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Soil
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Switchgrass, Maize And Mischanthus Litter
8.3%35.7%3.8%3.8%5.7%3.8%4.5%3.2%3.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
4MG_048006302170459019Switchgrass, Maize And Mischanthus LitterVPFTARQLGEVPAYDDASHESIYDVELPYGRLGRCRVSEAVGVDVGTRLEQVAAALSVYEARNGRAATASQLLGAGVDLSSQDGPAKATAA
ICChiseqgaiiDRAFT_081558743300000033SoilVPFTARQLGEVPASDVASHESVYDVELPYGRLGRCRVSEAVGVDVGTGLEQVAAALSIYETRHGRAATASQLLGTGVDLGSQDGPAKTTAT*
JGI10216J12902_10721575713300000956SoilVPFTARQLGEVPAYDDASHESVYDVELPYRRLGRCRMSEAVGVDVGTGLEQVAAALSIYETRNGRAATAAQLLGAGVDLSAQDGPAKTTAT*
C688J13580_101375023300001205SoilVPFTASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAAA*
Ga0062593_10076592823300004114SoilVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPAPARGG*
Ga0062593_10103742213300004114SoilVPFTASQLGEVPARDAAAEMRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERHGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0062595_10156818923300004479SoilVPFTASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0066809_1012856723300005168SoilVPFTASQLGEVPARDDAAQIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTTYEERNGRAATASQLLGSGVDLEAKDGPATAAA*
Ga0070682_10036476133300005337Corn RhizosphereVTFIASQLDEVLARDRGRDVRLFDVELPYRRLGRCRMSAEVAEQIGTGLADVAEALSIYESRHGRAVTASQLLGEGVDLGPPERGVVPD*
Ga0070709_1136408323300005434Corn, Switchgrass And Miscanthus RhizosphereVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0070662_10114939323300005457Corn RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPTPA*
Ga0070662_10118718833300005457Corn RhizosphereVPFTASQLGEVPARDAAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0070684_10032782243300005535Corn RhizosphereVPFTASQLGEVPTGEDGAQERVYDVEMPYRRLGRCRMSGPVAVALGTRLDQVAAALSSYEERTGRAVTASQLLGAGVDLE
Ga0070684_10044097943300005535Corn RhizosphereVTFIASQLDEVLARDRGRDVRLFDVELPYRRLGRCRMSAAVAEQIGIGLADVAEALSIYETRHGRAVTASQLLGEGVDLGPPERGVVPD*
Ga0070684_10163788413300005535Corn RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMAVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPA
Ga0068853_10164622613300005539Corn RhizosphereVPFTASQLGEVPTGEDGAQERVYDVEMPYRRLGRCRMSGPVAVALGTRLDQVAAALSSYEERTGRAVTASQLLGAGVDLEPQDGPASKAA*
Ga0066705_1045198323300005569SoilVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEATDGPATAAA*
Ga0068854_10038596923300005578Corn RhizosphereSQLGEVPTGEDGAQERVYDVEMPYRRLGRCRMSGPVAVALGTRLDQVAAALSSYEERTGRAVTASQLLGAGVDLEPQDGPASKAA*
Ga0068854_10047201313300005578Corn RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPTP
Ga0068856_10010726413300005614Corn RhizosphereVPFTASQLGEVPTGEDGAQERVYDVEMPYRRLGRCRMSGPVAVALGTRLDQVAAALSSYEERTGRAVTASQLLGAGVDLESQDGPASKAA*
Ga0068856_10048952823300005614Corn RhizosphereVPFTARQLGEVPGYDDASHDSSYDVELPYRRLGRCRMSATVGVDVGSGLEQVAAALSIYETRNGRAATAAQLLGAGVDLTSQDGPATPTPA*
Ga0070702_10082523913300005615Corn, Switchgrass And Miscanthus RhizosphereVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0068866_1105527423300005718Miscanthus RhizosphereVPFTARQLGEVPAYDDASHDSLYDVELPYGRLGRCRVSEAVGVDVGTGLKQVAAALSIYESRHGRAATASQLLGAGVDLSSDDGPAKTTAA*
Ga0068861_10055866423300005719Switchgrass RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMAVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPAPARGG*
Ga0066656_1089846013300006034SoilLDEVSVQTDGAPGRVYDVELPYRRLGRCRMSETVGVDAGTRLDEVAAALSIYETRNGRAQTASQLLGAGVDLGPQDDPAKTTAT*
Ga0066652_10137032013300006046SoilVPFTARQLGEVPAYDDASHESVYDVELPYRRLGRCRMSATVGVDVGTGLEQVAAALSIYETRNGRAATASQLLGAGVDLSAQDGPAKTTPA*
Ga0066652_10194853823300006046SoilVPFTARQMGEVPAPADGAHERAYDVDLPYRRLGRCRTSEPVAVALGTRLDQVAAALTTYEARNGQAATESQLLGAGVDLGAQDAPA*
Ga0079222_1027651733300006755Agricultural SoilVPFTARQLGEVPAYDDASHESIYDVELPYGRLGRCRVSEAVGVDVGTRLEQVAAALSIYETRNGRAATASQLLGAGVDLSCQDGPAKTTAA*
Ga0075434_10138900023300006871Populus RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPTPARGG*
Ga0111539_1121626023300009094Populus RhizosphereVPFTARQLCELPAPAERLQGRVYDVELPYRRLGRCRMSETVGVEVGTRLEEVAAALSSYEARHGRAETASRLLGVGVDLGPQDAPAKAAAT*
Ga0105245_1104774133300009098Miscanthus RhizosphereVPFIASQLDEVLARDGGRDVRVFDVELPYRRLGRCRMSAAVTEQIGIGLADVAEALSIYETRHGRAVTASQLLGEGVDLGPPERGGVPD*
Ga0105245_1322324423300009098Miscanthus RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPKPT*
Ga0075418_1077349113300009100Populus RhizosphereVPFTARQLCELPAQAERLQGRVYDVELPYRRLGRCRMSETVGVEVGTRLEEVAAALSSYEARHGRAETASRLLGVGVDLGPQDAPAKAAAT*
Ga0105243_1314457123300009148Miscanthus RhizosphereAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0105241_1161771123300009174Corn RhizosphereVPFTARQLGEVPAYDDASRDSLYDVELPYGRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPAPARGG*
Ga0105241_1213300923300009174Corn RhizosphereVPFTASQLGEVPARDDAAETRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0105248_1179989423300009177Switchgrass RhizosphereRADAAETRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0126313_1055540023300009840Serpentine SoilMGEVPAPADGARVRAYDVDMPYRRLGRCRMSEPVAVALGTRLDQVAAALTTYEARNGRAATESQLLGTGVDLGAQDGPA*
Ga0126313_1102197123300009840Serpentine SoilDDGAQVRVYDVDLPYRRLGRCRMSEPVAVALGTRLDQVAAALTTYEERTGRAATAAQLLGAGVDLEAKDGPATQLA*
Ga0138514_10002879723300011003SoilVPFTARQLDEVANGADGSHGRVYDVELPYRRLGRCRMAEAVGVEVGTRLDQVAAALSTYETRNGRAATASELLGAGVDLGSQDGPAKTAAA*
Ga0137365_1010245943300012201Vadose Zone SoilVPFTARQLGEVPVHADGLQGSVYDVELPYRRLGRCRMSATVGMDVGSRLEQVAAALSIYETRNGRAATAAQLLGAGVDLSSQDGPAKTTPA*
Ga0137369_1033544523300012355Vadose Zone SoilMPFTARQLGEVPGQANGVDGHVYDVELPYRRLGRCRVSATVGADVGTRLEEVAAALSTYEARNGRAETASRLLGVGVDLGAQDGPAAAS*
Ga0137368_1039847333300012358Vadose Zone SoilMPFTARQLGEVPARDDGAQVRVYHVDLPYRRLGRCRMSEPVAVALGTRLDQVAAALTTYEERMGRAVTAAQLLGAGVDLEAKDGPATQPA*
Ga0137375_1010997753300012360Vadose Zone SoilMPFTARQLGEVPARDDGAQVRVYDVDLPYRRLGRCRMSEPVAVALGTRLDQVAAALTTYEERMGRAVTAAQLLGAGVDLEAKDGPATQPA*
Ga0137375_1093361723300012360Vadose Zone SoilVSFTARQLGEVPAYDDASHESVYDVELPYRRLGRCRMSEAVGVDVGTGLEQVAAALSIYETRNGRAATAAQLLGAGVDLSAQDGPAKTTAT*
Ga0137373_1054508013300012532Vadose Zone SoilFTASQLGEVPTADSPTPADGACGRVYDVELPYRRLGRCRMSEPVAVELGTRLDQVAAALSTYEARNGRSETASQLLGAGVDLGAQDGPE*
Ga0157289_1037765223300012903SoilVPFTASQLGEVPARDAAAEMRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERHGRAATASQLLGSGVDLEAKDGPAT
Ga0157286_1001258633300012908SoilVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGTGVDLSSQDGPAKTTSCIGPRPDGPRSVYTR*
Ga0157301_1046239013300012911SoilVPFTARQLGEVPAYDAASRELVYDVELPYRRLGRCRMSDAVAAEVGIGLANVAAALSIHETRHGRAATASQLL
Ga0157302_1054477423300012915SoilVPFTARQLGEVPVQADGSHGRVYDVELPYRRLGRCRMSETVGVELGTRLDQVAAALSIYESRNGRAATASQLLGAGVDLGPQDGR*
Ga0164298_1036271723300012955SoilVPFTARQLGEVPVYDDASRESLYDVELPYRRLGRCRMSATVGVDVGSGLEQVAAALSIYETRNGRAATAAQLLGAGVDLTSQDGPAKAAPA*
Ga0164298_1124642623300012955SoilVPFTARQLGEVPAYDDASQESVYDVELPYGRLGRCRVSGGVGVDVGTGLEQVAAALSIYETRHGRAATASRLLGAGVDLSSQDGPATTTPAGADEPDGPRSV*
Ga0164299_1082975733300012958SoilVPFTASQLGEVPARDAAAEIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTTYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0164299_1140469923300012958SoilPAAEDRSPVRVYDVELPYRRLGRCRVSDAVALTLGTRLDQVAAALTTYEERHGRAATASQLLGAGVDLEAKDGPATAVAR*
Ga0164302_1028013223300012961SoilVPFTARQLGEVPAYDDASRELVYDVELPYRRLGRCRMSATVGEDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTSKDGPAEAHARTS*
Ga0164302_1173066213300012961SoilVPFTASQLGEVPAYDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0164308_1044561923300012985SoilVPFTARQLGEVPAYDDASRELVYDVELPYRRLGRCRMSATVGVDVGSGLEQVAAALSSYETRNGKAATAAQLLGAGVDLSSQDGPAKATPA*
Ga0164307_1018313623300012987SoilVPYKASQLGEVPGRDDAAEDHVYDVELPYRRLGRCRMTGPVADALGTRPDQVAAALSSYEERVGRSVTASQLLGAGVDLEARDGPATKAA*
Ga0164306_1029717643300012988SoilVPFTARQLGEVPVYDDASRESLYDVELPYRRLGRCRMSATVGVDVGSGLEQVAAALSSYETRNGKAATAAQLLGAGVDLSSQDGPAKATPA*
Ga0164305_1208343213300012989SoilLGEVPAYDDASRELVYDVELPYRRLGRCRMSATVGVDVGSSLKQVAAALSIYETRNGRAATASRLLGAGVDLSSQDGPATTTPAGADEPDGPRSV*
Ga0157371_1125015823300013102Corn RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMAVGSSLKQVAAALSIYETRHGRAATASQLLGTGVDLSSQDGPAKTTRCIGPRPDGPRSVY
Ga0157369_1118151923300013105Corn RhizosphereVPFTASQLGEVPAYDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNSYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0157369_1191061523300013105Corn RhizosphereVTFIASQLDEVLARDRGRDVRLFDVELPYRRLGRCRMSAEVAEQIGTGLADVAEALSIYESRHGRAVTASQLLGEGVDLGPPERGGVPD*
Ga0157374_1122136213300013296Miscanthus RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGVDVGSSLKEVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPAPARGG*
Ga0157378_1145563413300013297Miscanthus RhizosphereVPFTASQLGEVPARDDTAEIRVFDVELPYRRLGRCRMSGPVAVALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAV
Ga0163162_1247140813300013306Switchgrass RhizosphereASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTTYEERNGRAATASQLLGSGVDLEAKDGPATAVA*
Ga0182008_1056188313300014497RhizosphereLTVPFTASQLGEVPTREDGAQERVYDVELPYRRLGRCRMSGPVAVALGTRLDQVAAALSSYEQRTGRAVTASQLLGAG
Ga0173483_1069613033300015077SoilVPFTASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSETPGVDLGTRLELVAAALSTYETRHGRAETASRLLG
Ga0132258_1223969413300015371Arabidopsis RhizosphereVPFTARQLGEVPVYDDASHESVYDVSLPYGRLGRCRVSQAVGADVGTDLRQVAAALSIYETRNGRAATASQLLGAGVDLSSQDGPAETTSA*
Ga0132258_1284293933300015371Arabidopsis RhizosphereVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATVVA*
Ga0132258_1313669813300015371Arabidopsis RhizosphereVPFTASQLGEVSAPDGGMNGRVYDVELPYRRLGRCRMSEAVGAEVGFGLADVAAALSIHETRHGRAATAAQLLGPGVDLASRDGED*
Ga0132256_10081468313300015372Arabidopsis RhizosphereVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEARDGPATAAA*
Ga0132256_10108976313300015372Arabidopsis RhizosphereVPFTARQLGEVPVYDDASHESVYDVSLPYGRLGRCRVSQAVGADVGTDLRQVAAALSIYETRNGRATTASQLLGAGVDLSSQDGPPGTTPA*
Ga0132257_10030101933300015373Arabidopsis RhizosphereVPFTASQLGEVPARDDAAQIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATVVA*
Ga0132257_10369956413300015373Arabidopsis RhizosphereYDDASHESVYDVSLPYGRLGRCRVSQAVGADVGTDLRQVAAALSIYETRNGRAATASQLLGAGVDLSSQDGPAETTSA*
Ga0132255_10378819733300015374Arabidopsis RhizosphereVPFTARQLGEVPAYDDASHESVYDVSLPYGRLGRCRVSQAVGADVGTDLRQVAAALSIYETRNGRAATASQLLGAGVDLSSQDGPAKTTSA*
Ga0190266_1098365123300017965SoilVPFTASQLGEVPARDDAAAVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAAA
Ga0184604_1010080623300018000Groundwater SedimentMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGAGVDLEAKDGPATAAA
Ga0184605_1013465223300018027Groundwater SedimentVPFTARQLDEVPNGADGSHGRVYDVELPYRRLGRCRVAETVGADVGIGLDQVAAALSIYETRNGRAATASELLGAGVDLGSQDGPAKTVAA
Ga0184608_1021166413300018028Groundwater SedimentMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERNGRAATASQLLGAGVDLEAKDGPATAAA
Ga0184620_1010879323300018051Groundwater SedimentMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERNGRAATASQLLGAGVDLEAKDGPATAVA
Ga0184621_1005700323300018054Groundwater SedimentMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYAERNGRAATASQLLGAGVDLEAKDGPATAAA
Ga0184621_1006571023300018054Groundwater SedimentVPFTARQLDEVPNGADGSHGRVYDVELPYRRLGRCRVAETVGAEVGTRLDQVAAALSIYETRNGRAATASELLGAGVDLGSQDGPAKTVAA
Ga0184619_1006070843300018061Groundwater SedimentMNADGSNGRVYDVELPYRRLGRCRMAETVGLDVGTRLDQVAAALSIYETRNGRAATASQLLGAGVDLGSQDGPAKTAAA
Ga0184619_1008894023300018061Groundwater SedimentVPADGVHGRVYDVELPYRRLGRCRMSETVGAEVGIRLADVAAALSTYETRHGRAETASQLLGAGVDLASEDCAAKTTAA
Ga0184619_1033196713300018061Groundwater SedimentVPFTARQLGEVPVYDDASRESVYDVELPYRRLGRCRMSATVGVDVGSGLEQVAAALSIYETRNGRAATAAQLLGAGVDLSSQDGPAKTTPA
Ga0184617_112781923300018066Groundwater SedimentMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSEPVAVALGTRPDQVAAALSIYEERNGRAATASQLLGAGVDLEAKDGPATAAA
Ga0184618_1030972923300018071Groundwater SedimentMPFTASQLGEVPARDAGAQERVFDVELPYRRLGRCRMSEPVAVALGTRLDQVAAALSMYEERNGRAATASQLLGAGVDLEAKDGPATKAA
Ga0184624_1035055113300018073Groundwater SedimentMPFTTSQLGEVPARDDGAQERVYDVELPYRRLGRCRMSEPVAVALGTRPDQVAAALSIYEERNGRAATASQLLGAGVDLEAQDGPATKAA
Ga0184609_1025676123300018076Groundwater SedimentNGADGSHGRVYDVELPYRRLGRCRVAETVGAEVGTRLDQVAAALSIYETRNGRAATASELLGAGVDLGSQDGPAKTVAA
Ga0066667_1229669223300018433Grasslands SoilVPFTARQLGEVPAYDDASHESVYDVELPYRRLGRCRMSATVGVDVGTGLEQVAAALSIYETRNGRAATASQLLGAGVDLSAQDDPAKSTPA
Ga0210381_1016590613300021078Groundwater SedimentPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERNGRAATASQLLGAGVDLEAKDGPATAAA
Ga0182009_1059313313300021445SoilVPYKASQLGEVPGRDAAAEDRVYDVELPYRRLGRCRMSGPVADALGTRLDQVAAALSMYEERNGRAATASDLLGDGVDLETRDGPATKAA
Ga0247794_1008095523300024055SoilVPFTASQLGEVPARDAAAEMRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERHGRAATAAQLLGSGVDLEAKDGPATAVA
Ga0247794_1029691523300024055SoilVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPAPARGG
Ga0207642_1041278813300025899Miscanthus RhizosphereVLFTARQLGEVPAYDDASHDSLYDVELPYGRLGRCRVSEAVGVDVGTGLKQVAAALSIYESRHGRAATASQLLGAGVDLSSDDGPAKTTAA
Ga0207699_1096395323300025906Corn, Switchgrass And Miscanthus RhizosphereVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNSYEERNGRAATASQLLGSGVDLEAKDGPATAVA
Ga0207687_1090044513300025927Miscanthus RhizosphereVPFTASQLGEVPTGEDGAQERVYDVEMPYRRLGRCRMSGPVAVALGTRLDQVAAALSSYEERTGRAVTASQLLGAGVDLEPQDGPASKAA
Ga0207687_1103871013300025927Miscanthus RhizosphereVPFTASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAVA
Ga0207690_1141351713300025932Corn RhizosphereVPFTARQLGEVPAYDDASRELVYDVELPYRRLGRCRMSATVGVDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPAPAPGG
Ga0207706_1093917723300025933Corn RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMDVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPTPA
Ga0207706_1153449313300025933Corn RhizosphereVPFTASQLGEVPARDAAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAVA
Ga0207702_1112195023300026078Corn RhizosphereVPFTASQLGEVPTGEDGAQERVYDVEMPYRRLGRCRMSGPVAVALGTRLDQVAAALSSYEERTGRAVTASQLLGAGVDLESQDGPASKAA
Ga0207702_1251212713300026078Corn RhizosphereVPFTARQLGEVPGYDDASHDSSYDVELPYRRLGRCRMSATVGVDVGSGLEQVAAALSIYETRNGRAATAAQLLGAGVDLTSQDGPATPTPA
Ga0207641_1200715513300026088Switchgrass RhizosphereVPFTARQLGEVPAYDDASHDSLYDVELPYGRLGRCRVSEAVGVDVGTGLKQVAAALSIYESRHGRAATASQLLGAGVDLSSDDGPAKTTAA
Ga0207675_10061812233300026118Switchgrass RhizosphereVPFTARQLGEVPAYDDASRESVYDVELPYRRLGRCRMSATVGMAVGSSLKQVAAALSIYETRNGRAATASQLLGAGVDLTAQDGPAKPAPARGG
Ga0247822_1154333413300028592SoilVPFTASQLGEVPARDAAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATVVA
Ga0307276_1000224333300028705SoilVPFTARQLGEVPVYDDASHVSVYDVELPYRRLGRCRMSATVGVDVGSGLEQVAAALSIYETRNGRAATADQLLGAGVDLTSQDGPAKATPA
Ga0307291_101158133300028707SoilMPFTASQLGEVPARDAAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGAGVDLEAKDGPATAAA
Ga0307279_1001977823300028709SoilVPFTASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAAA
Ga0307285_1007332733300028712SoilASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERNGRAATASQLLGAGVDLEAKDGPATAVA
Ga0307307_1015004823300028718SoilVPARDAAAHGRAYDVELPYRRLGRCRMSGPVAVTLGTELDQVAAALSMYEERNGRAATASQLLGAGVDLEAQDGPATKAA
Ga0307307_1017002233300028718SoilMPFTASQLGEVPARDAAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKD
Ga0307307_1021511713300028718SoilMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERHGRAATASQLLGAGVDLEAKDGPATAVA
Ga0307301_1002707733300028719SoilMPFTASQLGEVPARDDGAQERVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERNGRAATASQLLGAGVDLEAKDGPATAAA
Ga0307301_1007670033300028719SoilVPFTARQLDEVPNGADGSHGRVYDVELPYRRLGRCRVAETVRAEVGTRLDQVAAALSIYETRNGRAATASELLGAGVDLGSQDGPAKTVAA
Ga0307319_1006247613300028722SoilMPFTASQLGEVPARDDGAQVRVYDVELPYRRLGRCRMSDAVATALGTRLDQVAAALTIYEERTGRATTATELLGPGVDLEAQDAPATKAA
Ga0307297_1029439023300028754SoilMPFTASQLGEVPARDAAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAAA
Ga0307297_1034969213300028754SoilVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMTDPVALALGTRLDQVAAALTSYEERNGRGATESQLLGSGVDLEATDG
Ga0307316_1018976013300028755SoilVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMTDPVALALGTRLDQVAAALTSYEERNGRGATESQLLGSGVDLEAKD
Ga0307280_1012171723300028768SoilMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAAA
Ga0307280_1030585613300028768SoilMPFTASQLGEVPARDDDAQVRVYDVDLPYRRLGRCRMSEPVAAALGTRLAEVAAALTMYEERTGRAATASQLLGDGVDL
Ga0307290_1005341423300028791SoilMPFTASQLGEVPARDDGAQERVYDVELPYRRLGRCRMSEPVAVALGTRPDQVAAALSIYEERNGRAATASQLLGAGVDLEAQDGPATKAA
Ga0307284_1013237933300028799SoilVPFTARQLDEVANGADGSHGRVYDVELPYRRLGRCRMAETVGAEVGTRLDQVAAALSIYETRNGRAATASELLGAGVDLGSQDGPAKTAAA
Ga0307284_1033961313300028799SoilVPFTARQLDEVPNGADGSHGRVYDVELPYRRLGRCRMSESVGVDVGTGLKQVAAALSVYETRNGRAATASQLLGAGVDLTSQDAPA
Ga0307284_1041328723300028799SoilMPFTASQLGEVPARDDVAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAAA
Ga0307305_1037841023300028807SoilVPFTASQLGEVHAPDDGPHGSVYDVELPYRRLGRCRMSESVGVDVGTGLKQVAAALSVYETRNGRAATASQLL
Ga0307292_1032290623300028811SoilVPFTASQLGEVAAQAGDQRGRAYDVDLPYRRLGRCRMSEAVGVDVGIRLKDVAAALSIYETRHGRAATATQLLGAGVDLGSDDGPARATAS
Ga0307302_1019602813300028814SoilMPFTASQLGEVPARDEGAQERVYDVELPYRRLGRCRMSEPVAVALGTRPDQVAAALSIYEERNGRAATASQLLGAGVDLEAQDGPATKAA
Ga0307302_1024838923300028814SoilVPFTASQLGEVPARDDGAQVRVYDVELPYRRLGRCRMSDAVATALGTRLDQVAAALTTYEERTGRGATASQLLGPGVDLEAQDAPATKAA
Ga0307312_1049223213300028828SoilVPFTASQLGEVPVPADGVHGRVYDVELPYRRLGRCRMSETVGAEVGIRLADVAAALSTYETRHGRAETASQLLGAGVDLASEDCAAKTTAA
Ga0307312_1049901823300028828SoilVPFTASQLGEVPARDDAAEIRVFDVELPYRRLGRCRMTDPVALALGTRLDQVAAALTSYEERNGRGATESQLLGSGVDLEATDGPATAAA
Ga0307314_1024300833300028872SoilMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERNGRAATASQLL
Ga0307286_1011863933300028876SoilVPFTASQLGEVTARDDAAEIRVFDVELPYRRLGRCRMTDPVALALGTRLDQVAAALTSYEERNGRGATESQLLGSGVDLEATDGPATAAA
Ga0307278_1006101043300028878SoilVPFTARQLDEVPNGADGSHGRVYDVELPYRRLGRCRVAETVGVDVGIGLDQVAAALSTYETRNGRAATASQLLGAGVDLGSQDGPAKTAEA
Ga0307278_1020689813300028878SoilVPFTASQLGEVPARDDAAPARVYDVELPYRRLGRCRMSEPVAVALGTRLDQVAAALTTYEERNGRAATASQLLGAGVDLEAQDGPATKAA
Ga0307277_1009022423300028881SoilVPFTARQLDEVANGADGSHGRVYDVELPYRRLGRCRMAEAVGVEVGTRLDQVAAALSIYETRNGRATTASELLGAGVDLGSQDGPAKTAAA
Ga0307277_1011738923300028881SoilVPFTASQLGEVPARDDGAQVRVYDVELPYRRLGRCRMSDAVATALGTRLDQVAAALTIYEERAGRAATATELLGPGVDLEAQDAPATKAA
Ga0307277_1011967133300028881SoilVPFTAKQLGEVPARDDAAEIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGAGVDLEAKDGPATAAA
Ga0307308_1054760723300028884SoilVPFTARQLGEVPVHADGLDGSVYDVELPYRRLGRCRMSATVGVDVGSGLEQVAAALSIYETRNGRAATAAQLLGAGVDLSSHDGPAKTTPA
Ga0307304_1015891233300028885SoilPTRDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERNGRAATASQLLGAGVDLEAKDGPATAVA
Ga0307304_1031526913300028885SoilVPFTASQLGEVPARDAAAHGRAYDVELPYRRLGRCRMSGPVAVTLGTELDQVAAALSMYEERNGRAATASQLLGAGVDLEARDGPATKAA
Ga0247827_1005011943300028889SoilVPFTASQLGEVPARDAAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTTYEERNGRAATASQLLGSGVDLEAKDGPATVVA
Ga0247826_1139141823300030336SoilVPFTARQLGEVPAYDDASHDSVYDVSLPYGRLGRCRVSQAVGADVGTDLRQVAAALSIYETRNGRAATASLLLGAGVDLSSQDGPAATTPA
Ga0308178_100763823300030990SoilVPFTARQLDEVANGADGSHGRVYDVELPYRRLGRCRVAETVGAEVGTRLDQVAAALSIYETRNGRAATASELLGAGVDLGSQDGPAKTVAA
Ga0308178_102649423300030990SoilVPFTASQLGEVHAPDDGPHGSVYDVELPYRRLGRCRMSESVGVDVGTGLKQVAAALSVYETRNGRAATASQLLGAGVDLTSQDAPAKVMAE
Ga0308187_1016260213300031114SoilMPFTASQLGEVPARDDVVQSRVYDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERHGRAATASQLLGAGVDLAAKDGPATAVA
Ga0307501_1001620113300031152SoilVPFTARQLGEVPAYDDASHESVYDVELPYRRLGRCRMSEAVGVDVGTGLEHVAAALSIYETRNGRAATAAQLLGVGVDLSSQDGPAKTAPA
Ga0308194_1011154623300031421SoilMPFTASQLGEVPARDDGARIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALNTYEERNGRAATASHLLGAGVDLEAKDGPATAAA
Ga0310886_1068156713300031562SoilVPFTASQLGEVPARDDAAQIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTTYEERNGRAATASQLLGSGVDLEAK
Ga0310904_1107057323300031854SoilVPFTASQLGEVPARDDDAQIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTTYEERNGRAATASQLLGSGVDLEAKDGPATAAA
Ga0307406_1153486413300031901RhizospherePVPFTARQMGEVPAPADGARVRAYDVDMPYRRLGRCRMSEPVAVALGTRLDQVAAALTTYEARNGRAATESQLLGTGVDLGAQDGPA
Ga0308175_10271745413300031938SoilVPFTASQLGEVPARDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDG
Ga0307409_10035048323300031995RhizosphereVPFTARQMGEVPAPADGARVRAYDVDMPYRRLGRCRMSEPVAVALGTRLDQVAAALTTYEARNGRAATESQLLGTGVDLGAQDGPA
Ga0308176_1109851613300031996SoilVPFTARQLGEVPAYDDASHESIYDVELPYRRLGRCRMAEAVGAEVGTRLEQVAAALSIYETRNGRAATASELLGAGVDLGSQDGPAKTAAA
Ga0310906_1080973513300032013SoilVPFTASQLGEVPARDDAAQIRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTTYEERNGRAATASQLLGSGVDLEAKDGPATAAA
Ga0310890_1099643413300032075SoilVPFTASQLGEVPAYDDAAEVRVFDVELPYRRLGRCRMSDPVALALGTRLDQVAAALTSYEERNGRAATASQLLGSGVDLEAKDGPATAVA


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.