Metagenome / Metatranscriptome Family F042812

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F042812
Family Type	Metagenome / Metatranscriptome
Number of Sequences	157
Average Sequence Length	65 residues
Representative Sequence	MQPAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLLEMLSAIDGQIAVLKEIDAGSA
Number of Associated Samples	118
Number of Associated Scaffolds	157

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.18 %
% of genes near scaffold ends (potentially truncated)	30.57 %
% of genes from short scaffolds (< 2000 bps)	74.52 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (73.885 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.561 % of family members)
Environment Ontology (ENVO)	Unclassified (28.025 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.408 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.0: automated matches	d5hjfa_	5hjf	0.91229
a.25.1.1: Ferritin	d2cf7a_	2cf7	0.9056
a.25.1.1: Ferritin	d3ka8a_	3ka8	0.90192
a.25.1.1: Ferritin	d4cvra_	4cvr	0.89888
a.2.5.1: Prefoldin	d1fxka_	1fxk	0.89578

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 157 Family Scaffolds
PF13416	SBP_bac_8	14.01
PF01717	Meth_synt_2	8.28
PF09347	DUF1989	3.82
PF00496	SBP_bac_5	3.82
PF12840	HTH_20	2.55
PF13458	Peripla_BP_6	1.91
PF03928	HbpS-like	1.91
PF00528	BPD_transp_1	1.91
PF10518	TAT_signal	1.27
PF00291	PALP	0.64
PF01266	DAO	0.64
PF01145	Band_7	0.64
PF08450	SGL	0.64
PF05163	DinB	0.64
PF01022	HTH_5	0.64
PF00903	Glyoxalase	0.64
PF13683	rve_3	0.64

COG ID	Name	Functional Category	% Frequency in 157 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	8.28
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.64
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.64
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.89 %
Unclassified	root	N/A	26.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.89 %
Unclassified	root	N/A	26.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.89 %
Unclassified	root	N/A	26.11 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	36.31 %
Unclassified	root	N/A	26.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.46 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.27 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	36.31 %
Unclassified	root	N/A	26.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.27 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	36.31 %
Unclassified	root	N/A	26.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.27 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.11 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	15.29 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.27 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.64 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.11 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	15.29 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.27 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.64 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.64 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101428647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	713	Open in IMG/M
3300000550\|F24TB_11730418	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300000955\|JGI1027J12803_100212210	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	524	Open in IMG/M
3300000955\|JGI1027J12803_103326916	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300000956\|JGI10216J12902_101894086	Not Available	786	Open in IMG/M
3300000956\|JGI10216J12902_117849339	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	907	Open in IMG/M
3300002562\|JGI25382J37095_10209477	Not Available	588	Open in IMG/M
3300003319\|soilL2_10127559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1339	Open in IMG/M
3300004267\|Ga0066396_10030095	Not Available	786	Open in IMG/M
3300004281\|Ga0066397_10022809	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300004480\|Ga0062592_101376013	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300004633\|Ga0066395_10941222	Not Available	525	Open in IMG/M
3300005093\|Ga0062594_100304962	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1214	Open in IMG/M
3300005167\|Ga0066672_10001536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8655	Open in IMG/M
3300005177\|Ga0066690_10375526	Not Available	965	Open in IMG/M
3300005179\|Ga0066684_11021931	Not Available	533	Open in IMG/M
3300005180\|Ga0066685_10023906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3705	Open in IMG/M
3300005180\|Ga0066685_10345445	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1032	Open in IMG/M
3300005180\|Ga0066685_10760899	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	659	Open in IMG/M
3300005180\|Ga0066685_10761935	Not Available	659	Open in IMG/M
3300005186\|Ga0066676_10000044	All Organisms → cellular organisms → Bacteria	29743	Open in IMG/M
3300005186\|Ga0066676_10574469	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	764	Open in IMG/M
3300005295\|Ga0065707_10125367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2025	Open in IMG/M
3300005295\|Ga0065707_10428765	Not Available	822	Open in IMG/M
3300005332\|Ga0066388_100003542	All Organisms → cellular organisms → Bacteria	10163	Open in IMG/M
3300005332\|Ga0066388_100403025	All Organisms → cellular organisms → Bacteria	2013	Open in IMG/M
3300005332\|Ga0066388_100862295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1489	Open in IMG/M
3300005332\|Ga0066388_103679107	Not Available	783	Open in IMG/M
3300005332\|Ga0066388_106041801	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	611	Open in IMG/M
3300005332\|Ga0066388_107861048	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	534	Open in IMG/M
3300005341\|Ga0070691_11007225	Not Available	520	Open in IMG/M
3300005353\|Ga0070669_100638528	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300005363\|Ga0008090_14380191	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300005441\|Ga0070700_100331811	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300005445\|Ga0070708_100894870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	833	Open in IMG/M
3300005446\|Ga0066686_10285397	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300005467\|Ga0070706_100352124	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1372	Open in IMG/M
3300005518\|Ga0070699_100075650	All Organisms → cellular organisms → Bacteria	2930	Open in IMG/M
3300005540\|Ga0066697_10312582	Not Available	921	Open in IMG/M
3300005549\|Ga0070704_101787477	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	569	Open in IMG/M
3300005552\|Ga0066701_10007582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4712	Open in IMG/M
3300005555\|Ga0066692_10665386	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	648	Open in IMG/M
3300005556\|Ga0066707_10030873	All Organisms → cellular organisms → Bacteria	2964	Open in IMG/M
3300005568\|Ga0066703_10078018	All Organisms → cellular organisms → Bacteria	1911	Open in IMG/M
3300005713\|Ga0066905_100627503	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300005764\|Ga0066903_100101225	All Organisms → cellular organisms → Bacteria	3894	Open in IMG/M
3300005983\|Ga0081540_1273989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	583	Open in IMG/M
3300006049\|Ga0075417_10002568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5506	Open in IMG/M
3300006800\|Ga0066660_10719756	Not Available	817	Open in IMG/M
3300006854\|Ga0075425_101145952	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300006854\|Ga0075425_102806113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	536	Open in IMG/M
3300006881\|Ga0068865_101237684	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	662	Open in IMG/M
3300006953\|Ga0074063_10417249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	553	Open in IMG/M
3300006969\|Ga0075419_11165686	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	567	Open in IMG/M
3300007255\|Ga0099791_10150139	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300009012\|Ga0066710_100109434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3726	Open in IMG/M
3300009012\|Ga0066710_104229182	Not Available	536	Open in IMG/M
3300009100\|Ga0075418_10843610	Not Available	990	Open in IMG/M
3300009147\|Ga0114129_13344652	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	517	Open in IMG/M
3300009162\|Ga0075423_10027622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5707	Open in IMG/M
3300009553\|Ga0105249_11759995	Not Available	692	Open in IMG/M
3300009553\|Ga0105249_12194915	Not Available	625	Open in IMG/M
3300009792\|Ga0126374_10247210	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300010043\|Ga0126380_11806910	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300010046\|Ga0126384_10873094	Not Available	810	Open in IMG/M
3300010303\|Ga0134082_10491981	Not Available	534	Open in IMG/M
3300010359\|Ga0126376_10093001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2277	Open in IMG/M
3300010359\|Ga0126376_12272610	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	588	Open in IMG/M
3300010360\|Ga0126372_12991263	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	524	Open in IMG/M
3300010361\|Ga0126378_11688238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	720	Open in IMG/M
3300010362\|Ga0126377_11597526	Not Available	726	Open in IMG/M
3300010362\|Ga0126377_13406881	Not Available	514	Open in IMG/M
3300010366\|Ga0126379_10026172	All Organisms → cellular organisms → Bacteria	4475	Open in IMG/M
3300010376\|Ga0126381_101948110	Not Available	847	Open in IMG/M
3300010398\|Ga0126383_10091095	All Organisms → cellular organisms → Bacteria	2694	Open in IMG/M
3300010398\|Ga0126383_11216604	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300010403\|Ga0134123_10733417	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300012096\|Ga0137389_10133319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2017	Open in IMG/M
3300012202\|Ga0137363_10424061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1111	Open in IMG/M
3300012203\|Ga0137399_10336586	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1252	Open in IMG/M
3300012205\|Ga0137362_10894861	Not Available	758	Open in IMG/M
3300012208\|Ga0137376_11095291	Not Available	681	Open in IMG/M
3300012211\|Ga0137377_11640577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	566	Open in IMG/M
3300012362\|Ga0137361_10818529	Not Available	847	Open in IMG/M
3300012582\|Ga0137358_10079500	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2206	Open in IMG/M
3300012685\|Ga0137397_10242429	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300012685\|Ga0137397_10546447	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	862	Open in IMG/M
3300012922\|Ga0137394_10342815	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1275	Open in IMG/M
3300012929\|Ga0137404_10142121	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1987	Open in IMG/M
3300012944\|Ga0137410_10102988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2119	Open in IMG/M
3300012948\|Ga0126375_10277149	Not Available	1151	Open in IMG/M
3300012948\|Ga0126375_11921771	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	520	Open in IMG/M
3300012971\|Ga0126369_10093680	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2700	Open in IMG/M
3300012972\|Ga0134077_10533984	Not Available	523	Open in IMG/M
3300014154\|Ga0134075_10000435	All Organisms → cellular organisms → Bacteria → Proteobacteria	12572	Open in IMG/M
3300015245\|Ga0137409_10215124	All Organisms → cellular organisms → Bacteria	1723	Open in IMG/M
3300015371\|Ga0132258_10511398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3005	Open in IMG/M
3300015371\|Ga0132258_12385405	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300015374\|Ga0132255_100181135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2967	Open in IMG/M
3300015374\|Ga0132255_100411761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1971	Open in IMG/M
3300016270\|Ga0182036_11688621	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	534	Open in IMG/M
3300018431\|Ga0066655_10012666	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3712	Open in IMG/M
3300018431\|Ga0066655_10153127	Not Available	1372	Open in IMG/M
3300018468\|Ga0066662_10067680	All Organisms → cellular organisms → Bacteria	2374	Open in IMG/M
3300018468\|Ga0066662_11902087	Not Available	623	Open in IMG/M
3300020170\|Ga0179594_10040287	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1538	Open in IMG/M
3300021560\|Ga0126371_11598693	Not Available	778	Open in IMG/M
3300025910\|Ga0207684_10012118	All Organisms → cellular organisms → Bacteria	7505	Open in IMG/M
3300025910\|Ga0207684_10039927	All Organisms → cellular organisms → Bacteria	3978	Open in IMG/M
3300025910\|Ga0207684_10881439	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	753	Open in IMG/M
3300025922\|Ga0207646_10133429	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2235	Open in IMG/M
3300025922\|Ga0207646_10171663	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300026296\|Ga0209235_1058829	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1806	Open in IMG/M
3300026309\|Ga0209055_1001466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15523	Open in IMG/M
3300026342\|Ga0209057_1010337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5848	Open in IMG/M
3300026528\|Ga0209378_1238193	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	579	Open in IMG/M
3300026542\|Ga0209805_1014722	All Organisms → cellular organisms → Bacteria	4157	Open in IMG/M
3300027527\|Ga0209684_1015377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1196	Open in IMG/M
3300027873\|Ga0209814_10003092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6164	Open in IMG/M
3300027873\|Ga0209814_10030870	All Organisms → cellular organisms → Bacteria	2206	Open in IMG/M
3300027874\|Ga0209465_10041264	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2195	Open in IMG/M
3300027880\|Ga0209481_10009079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4250	Open in IMG/M
3300027907\|Ga0207428_10000283	All Organisms → cellular organisms → Bacteria	68603	Open in IMG/M
3300027909\|Ga0209382_10546762	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300027909\|Ga0209382_11444177	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300027909\|Ga0209382_12058464	Not Available	545	Open in IMG/M
3300028380\|Ga0268265_10418979	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1243	Open in IMG/M
3300028792\|Ga0307504_10095389	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	938	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10013702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2083	Open in IMG/M
3300031226\|Ga0307497_10169356	Not Available	922	Open in IMG/M
3300031538\|Ga0310888_10009216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3701	Open in IMG/M
3300031545\|Ga0318541_10135608	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300031547\|Ga0310887_10497587	Not Available	733	Open in IMG/M
3300031562\|Ga0310886_10122317	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1331	Open in IMG/M
3300031720\|Ga0307469_10134725	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1816	Open in IMG/M
3300031720\|Ga0307469_10218235	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1505	Open in IMG/M
3300031720\|Ga0307469_10502210	Not Available	1063	Open in IMG/M
3300031720\|Ga0307469_11237549	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300031720\|Ga0307469_11492461	Not Available	647	Open in IMG/M
3300031720\|Ga0307469_12449714	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	510	Open in IMG/M
3300031740\|Ga0307468_100140236	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1530	Open in IMG/M
3300031769\|Ga0318526_10433203	Not Available	537	Open in IMG/M
3300031793\|Ga0318548_10175310	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300031858\|Ga0310892_11025992	Not Available	582	Open in IMG/M
3300031944\|Ga0310884_10960487	Not Available	529	Open in IMG/M
3300031946\|Ga0310910_10371208	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1132	Open in IMG/M
3300032044\|Ga0318558_10129464	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1203	Open in IMG/M
3300032174\|Ga0307470_10850155	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	712	Open in IMG/M
3300032180\|Ga0307471_100071584	All Organisms → cellular organisms → Bacteria	2994	Open in IMG/M
3300032180\|Ga0307471_100209237	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1961	Open in IMG/M
3300032180\|Ga0307471_100559427	Not Available	1299	Open in IMG/M
3300032180\|Ga0307471_100998185	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300032180\|Ga0307471_103994553	Not Available	521	Open in IMG/M
3300033004\|Ga0335084_10948039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	869	Open in IMG/M
3300033502\|Ga0326731_1057198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	910	Open in IMG/M
3300034668\|Ga0314793_139631	Not Available	539	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.71%
Host-Associated	Host-Associated	15.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.71%
Plants	Host-Associated → Plants	15.29%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.46%
Peat	Environmental → Terrestrial → Peat	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.88%
Loam	Environmental → Terrestrial → Soil → Loam	15.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.64%
Sand	Environmental → Terrestrial → Soil → Sand	0.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.01%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.91%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.64%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.28%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.18%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.27%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.64%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.64%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.64%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.64%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.64%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.64%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033502	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fraction	Environmental	Open in IMG/M
3300034668	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1014286472	3300000364	Soil	MHAAEERANQIRILSGVAGHLCSALESLARSDCDWYTSDLLEMLSAIDGQIAVLKQIDAGNA*
F24TB_117304182	3300000550	Soil	MPDADSRAYQIRVLSGAAGHLCSALEALAHSECDWYTRDLLAMLSAIDGQIAVLRAIDGV
JGI1027J12803_1002122101	3300000955	Soil	SQIRILSGVAGHLCSALESLARSDCDWYTSDLLEMLSAIDGQIAVLKQIDAGNA*
JGI1027J12803_1033269162	3300000955	Soil	MHEAASRAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLKELDEGRPLGL*
JGI10216J12902_1018940861	3300000956	Soil	RLTGARFRLTKPEMHEAASRAHQIRVLSGVAGHLCSAFEALSRSDCDWYTTDLLEMLSAIDGQIAVLKELDEGRPLGL*
JGI10216J12902_1178493391	3300000956	Soil	MHAAEERANQIRILSGVAGHLCSALEALATSDSDWYTSDLLEMLSAIDGQIAVLKQIDAGNA*
JGI25382J37095_102094771	3300002562	Grasslands Soil	MQDAGTRADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAALKELDEGRPLGF*
soilL2_101275592	3300003319	Sugarcane Root And Bulk Soil	MYDVSSRAHQIRVLSGVAGHLCSALEALSRSNCDSYTSDLLAMLSAIDGQIAVLKELDES
Ga0066396_100300952	3300004267	Tropical Forest Soil	MQNAEERANQIRILSGVAGHLCSALETLTRSDCDWYTTDLLEMLSAIDGQIAILKEIDAGSA*
Ga0066397_100228092	3300004281	Tropical Forest Soil	MHAAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLREMLSAIDGQIAVLEEID
Ga0062592_1013760131	3300004480	Soil	MHDTDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGQIAA
Ga0066395_109412222	3300004633	Tropical Forest Soil	TKRPMHAAEERANQIRILSGVAGHLCSELEALAKSDCDWYTTDLREMLSAIDGQIAVLEEIDAGDA*
Ga0062594_1003049621	3300005093	Soil	MHDTDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGQIAALRELDAGLA*
Ga0066672_100015366	3300005167	Soil	MYHDDARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF*
Ga0066690_103755262	3300005177	Soil	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDGQIAMLKELDKGRPLSL*
Ga0066684_110219311	3300005179	Soil	MHHDDARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF*
Ga0066685_100239066	3300005180	Soil	HDDARAHQIRVLSGVAGHLCSALETLSRSDCDRYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF*
Ga0066685_103454451	3300005180	Soil	KWTTSRLTGARFRLTKRRMQDAAERANQIRILSGVAGHLCSALETLARSDCEGYTKDLLEMLSAIDSQIAVLKEIDARSA*
Ga0066685_107608991	3300005180	Soil	MYHDDARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLED
Ga0066685_107619351	3300005180	Soil	MHDAGARADQIRVLSRVAGHLCSALEALSRSDCDWYSTDLLEMLSTIDRQIAVLKELDKGRPLGL*
Ga0066676_1000004428	3300005186	Soil	MQDAAERANQIRILSGVAGHLCSALETLARSDCEGYTKDLLEMLSAIDSQIAVLKEIDARSA*
Ga0066676_105744692	3300005186	Soil	MYHDDARAHQIRVLSGVAGHLCSALETLSRSDCDRYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF*
Ga0065707_101253671	3300005295	Switchgrass Rhizosphere	MHEAASRAHQIRVLSGAAAHLCSALEALSRSDCDWYTTDLLEMLSAIDGQI
Ga0065707_104287651	3300005295	Switchgrass Rhizosphere	LTAARFRLNKRRVQNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR*
Ga0066388_1000035428	3300005332	Tropical Forest Soil	MHAAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLREMLSAIDGQIAVLEEIDAGDA*
Ga0066388_1004030253	3300005332	Tropical Forest Soil	VDKWTTSRLTGTRFRLTKRRMQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA*
Ga0066388_1008622951	3300005332	Tropical Forest Soil	RWIDVDKWTTSRLTGPRFRLTKRRMQNAEERANQIRILSGVAGHLCSALETLTRSDCDWYTTDLLEMLSAIDGQIAILKEIDAGSA*
Ga0066388_1036791072	3300005332	Tropical Forest Soil	AEERADQIRILSGVAGHLCSALDALAKSDCDWYTTDLLEMLSAIDGQIAVLKEIDAGNA*
Ga0066388_1060418012	3300005332	Tropical Forest Soil	MQDAEERANQIRILSGVAGHLCSALETLERGDCDWYTSDLLEMLSTIDGQIAILKEIDAANA*
Ga0066388_1078610481	3300005332	Tropical Forest Soil	MQDAEERASQIRILSGVAGHLCSALETLARNDCDWYRTDLLEMLSTIDGQIAVLKEIDAGNA*
Ga0070691_110072252	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	AMLETDARAHQIRVLSGVAGHLCLALEALARSDCDWYTTDLLELLSAIDGQIAALRELDAGLA*
Ga0070669_1006385282	3300005353	Switchgrass Rhizosphere	MHDTDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGQIAALRELDAGLV*
Ga0008090_143801912	3300005363	Tropical Rainforest Soil	MQDAEERANQIRILSGVAGHLCSALETLARNDCDWYTTDLLEMLSTIDGQISILKVIDAGNA*
Ga0070700_1003318112	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR*
Ga0070708_1008948702	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQDAGARADQIRALSGVAGHLCSALEALSRSDCDWYTADLLAMLSAIDRQIAVLKELDEVRPRGF*
Ga0066686_102853972	3300005446	Soil	MYHDDARAHQIRVLSGVAGHLCSALDALSRSDCDWYTTDLLAMLSAIDGQIAVLEELDEGRPRGF*
Ga0070706_1003521242	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LTGARFRLTKREMQDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAALKELDEGRPLGF*
Ga0070699_1000756502	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MQDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAALKELDEGRPLGF*
Ga0066697_103125821	3300005540	Soil	MHHDDARAHQIRVLSGVAGHLCSALETLSRSDCDRYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF*
Ga0070704_1017874771	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	NSRGIYRVDPGDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGQIAALRELDAGLV*
Ga0066701_100075822	3300005552	Soil	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDRQIAVLKELDKGRPLSL*
Ga0066692_106653861	3300005555	Soil	LTGARFRLTKRRMQDAAERANQIRILSGVAGHLCSALETLARSDCEGYTKDLLEMLSAIDSQIAVLKEIDARSA*
Ga0066707_100308732	3300005556	Soil	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSTIDRQIAVLKELDKGRPLGL*
Ga0066703_100780182	3300005568	Soil	MHHDDARAHQIRVLSGVAGHLCSALEALSRSDCDRYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF*
Ga0066905_1006275032	3300005713	Tropical Forest Soil	MQPAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLLEMLSAIDGQIAVLKEIDTGGA*
Ga0066903_1001012252	3300005764	Tropical Forest Soil	VDKWTTSRLTGPRFRLTKRRMQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA*
Ga0081540_12739892	3300005983	Tabebuia Heterophylla Rhizosphere	MTEADARAHQIRVLSGVAGHLCSALEALARSDCDWYTTDLLEMLSAIDGQIAVLKAIDEERPRG
Ga0075417_100025683	3300006049	Populus Rhizosphere	MAEADARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLTELDEERPRGF*
Ga0066660_107197562	3300006800	Soil	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDGQIAVLKQLDAGRPLGL*
Ga0075425_1011459522	3300006854	Populus Rhizosphere	MQDAGTRADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLKALDEGRPLGF*
Ga0075425_1028061131	3300006854	Populus Rhizosphere	MAEADARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLAMLSAIDGQIAVLKEIDEGRPFGL*
Ga0068865_1012376842	3300006881	Miscanthus Rhizosphere	LTATAFPDYQAAMLETDARAHQIRVLSGVAGHLCLALEALARSDCDWYTTDLLELLSAIDGQI
Ga0074063_104172491	3300006953	Soil	MHDTDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGQIAALRE
Ga0075419_111656863	3300006969	Populus Rhizosphere	MHNATAREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQI
Ga0099791_101501391	3300007255	Vadose Zone Soil	LTAAAFPDYQAAMLDTDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDL
Ga0066710_1001094346	3300009012	Grasslands Soil	LTKRRNVDARAHQIRVLSGVVGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF
Ga0066710_1042291822	3300009012	Grasslands Soil	MQDAGARADQIRALSGVAGHLCSALEALSRSDYDWYTADLLAMLSAIDRQIAVLKELDEVRPRGF
Ga0075418_108436102	3300009100	Populus Rhizosphere	MHNATAREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELDER
Ga0114129_133446521	3300009147	Populus Rhizosphere	MHNATAREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQ
Ga0075423_100276222	3300009162	Populus Rhizosphere	MLETDARAHQIRVLSGVAGYLCSALEALARSDCDRYTTDLLELLSAIDGQIAALQELDAGLV*
Ga0105249_117599951	3300009553	Switchgrass Rhizosphere	VQNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR
Ga0105249_121949151	3300009553	Switchgrass Rhizosphere	AAMLETDARAHQIRVLSGVAGHLCLALEALARSDCDWYTTDLLELLSAIDGQIAALRELDAGLA*
Ga0126374_102472102	3300009792	Tropical Forest Soil	MQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA*
Ga0126380_118069101	3300010043	Tropical Forest Soil	RPMHAAEERADQIRILSGVAGHLCSALEALANSDCDWYTTDLLEMLSAIDGQIAVLEEIDAGNA*
Ga0126384_108730942	3300010046	Tropical Forest Soil	MQPADERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLLEMLSAIDGQIAGLKEIDAGGA*
Ga0134082_104919811	3300010303	Grasslands Soil	MQDAAERANQIRILSGVAGHLCSALETLARSDCEGYTKDLLEMLSAIDSQIAVLQEIDARSA*
Ga0126376_100930012	3300010359	Tropical Forest Soil	MHAAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLRKMLSAIDGQIAVLEEIDAGDA*
Ga0126376_122726102	3300010359	Tropical Forest Soil	MQDAEARANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA*
Ga0126372_129912632	3300010360	Tropical Forest Soil	MHADDERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLLEMLSAIDGQIAVLKEIDAGDA*
Ga0126378_116882381	3300010361	Tropical Forest Soil	MQDAEERANQIRILSGVAGHLCSALETLARNDCDWYRTDLLEMLSTIDGQIAVLKEIDAGNA*
Ga0126377_115975261	3300010362	Tropical Forest Soil	MHAAEERADQIRILSGVAGHLCSALEALANSDCDWYTTDLLEMLSAIDGQIAVLKEINAGNA*
Ga0126377_134068811	3300010362	Tropical Forest Soil	SRLTAARFRLTKRPMHAAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLREMLSAIDGQIAVLEEIDAGDA*
Ga0126379_100261721	3300010366	Tropical Forest Soil	MHAAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLREMLSAIDGQIAVLEEIDAG
Ga0126381_1019481102	3300010376	Tropical Forest Soil	MQNAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLREMLSAIDGQIAVLEEIDAGDA*
Ga0126383_100910954	3300010398	Tropical Forest Soil	MHAAEERANQIRILSGVAGHLCSPLEALAKSDCDWYTTDLREMLSAIDGQIAVLEEIDAGDA*
Ga0126383_112166042	3300010398	Tropical Forest Soil	MHAAEERANRIRILSGVAGHLCSALETLAKSDCDWYTTDLLEMLSTIDDQIAGLNEIDAGNA*
Ga0134123_107334172	3300010403	Terrestrial Soil	MHDTDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGQIAALLELDAGLV*
Ga0137389_101333193	3300012096	Vadose Zone Soil	MHNADARAHQIRVLSGVAGHLCSALEVLSRSDCDWYTPDLLEMLSAIDGQIAVLRELEREPG*
Ga0137363_104240612	3300012202	Vadose Zone Soil	MHDAHARADQVRVLSGAAGHLCAALEALSRSDCDWYTTDLLEMLSAIDGQIAVLKELDEGLPLGL*
Ga0137399_103365862	3300012203	Vadose Zone Soil	MNGDEWTNFAVDTSAGFRLTKRPMHDADARAQQIRVLSGVAGHLCSAIEALARSDCDWYTTDLLEMLSAIDGQIAVLRESDSGRA*
Ga0137362_108948612	3300012205	Vadose Zone Soil	MNGDEWTNFAVDTSAGFRLTKRPMHDADARAQQIRVLSGVAGHLCSAIEALARSDCDWYTTDLLEMLSAIDGQIAVLREIDSGRA*
Ga0137376_110952911	3300012208	Vadose Zone Soil	AGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSTIDRQIAVLKELDKGRPLGL*
Ga0137377_116405771	3300012211	Vadose Zone Soil	MQDAGARADQIRALSGVAGHLCSALEALSRSDYDWYTADLLAMLSAIDRQIAVLKELDEVRPRGF*
Ga0137361_108185292	3300012362	Vadose Zone Soil	RLTKREMQDAGTRADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLELLSAIDGQIAALRELDAGLV*
Ga0137358_100795002	3300012582	Vadose Zone Soil	MSGDEWTNFAVDTSAGFRLTKRPMHDADARAQQIRVLSGVAGHLCSAIEALARSDCDWYTTDLLEMLSAIDGQIAVLREIDSGRA*
Ga0137397_102424292	3300012685	Vadose Zone Soil	MHDAHARAHQIRVLSGVAGHLCSALEALSRGECDWYRTDLLEMLSAIDGQIAVLKELDESRPLGL*
Ga0137397_105464472	3300012685	Vadose Zone Soil	MHNAAARADQIRVLSGVAGHLCSALDALARSECDWYTTDLLEMLSAIDGQIAVLREIDAGRA*
Ga0137394_103428151	3300012922	Vadose Zone Soil	LTGARFGLTKRAMHDAHARAHQIRVLSGVAGHLCSALEALSRGECDWYRTDLLEMLSAIDGQIAVLKELDESRPLGL*
Ga0137404_101421212	3300012929	Vadose Zone Soil	MHDAHARADQIRVLSGAAGHLCAALEALSRSDCDWYTTDLLEMLSAIDGQIAVLKELDEGLPLGL*
Ga0137410_101029883	3300012944	Vadose Zone Soil	MHDAHARAHQIRVLSGVAGHLCSALEALSRGECDWYRTDLLEMLSAIDGQIAVLKELDE
Ga0126375_102771491	3300012948	Tropical Forest Soil	MQNADERANQIRILSGVAGHLCSALETLARNDCDWYRTDLLEMLSTIDGQIAVLKEIDAGNA*
Ga0126375_119217712	3300012948	Tropical Forest Soil	MQPAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLLEMLSAIDGQIAVLKEIDAGSA*
Ga0126369_100936803	3300012971	Tropical Forest Soil	MHAAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLREMLSAIDGQISVLEEIDAGDA*
Ga0134077_105339841	3300012972	Grasslands Soil	MQDAGTRADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF*
Ga0134075_1000043513	3300014154	Grasslands Soil	GARFRLTKRRMRDADERANQIRILSGVAGHLCSALETLARSDCEGYTKDLLEMLSAIDSQIAVLKEIDARSA*
Ga0137409_102151241	3300015245	Vadose Zone Soil	MHDAHARAHQIRVLSGVAGHLCSALEALSRGECDWYRTDLLEMLSAIDGQIAVLKELDESRP
Ga0132258_105113984	3300015371	Arabidopsis Rhizosphere	MHDADARAHQIRILSGVAGHLCSALEALARSDCDWYTTALLEMLSAIDGQIAALKELDARPA*
Ga0132258_123854052	3300015371	Arabidopsis Rhizosphere	MLETDSRAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGQIAALRELDAGLV*
Ga0132255_1001811353	3300015374	Arabidopsis Rhizosphere	MHDAAARAHQIRILSGVAGHLCSALEALARSDCDWYTTALLEMLSAIDGQIAALKELDARPA*
Ga0132255_1004117612	3300015374	Arabidopsis Rhizosphere	MQDVSPRDHQIRVLSGVAGHLCSALEALSRSDCDSYTSDLLAMLSAIDGQIAVLKELDER
Ga0182036_116886212	3300016270	Soil	TKRRMQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA
Ga0066655_100126662	3300018431	Grasslands Soil	MQDAAERANQIRILSGVAGHLCSALETLARSDCEGYTKDLLEMLSAIDSQIAVLKEIDARSA
Ga0066655_101531272	3300018431	Grasslands Soil	MYHDDARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEELDEGRPRGF
Ga0066662_100676802	3300018468	Grasslands Soil	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDGQIAMLKELDKGRPLSL
Ga0066662_119020871	3300018468	Grasslands Soil	MQDAGTRADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF
Ga0179594_100402871	3300020170	Vadose Zone Soil	LTGVPFRLTKRAMHDAHARADQIRVLSGAAGHLCAALEALSRSDCDWYTTDLLEMLSAIDGQIAVLKELDEGLPLGL
Ga0126371_115986932	3300021560	Tropical Forest Soil	MQNAEERANQIRILSGVAGHLCSALETLTRSDCDWYTTDLLEMLSAIDGQIAILKEIDAGSA
Ga0207684_100121186	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MQDAGTRADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAALKELDEGRPLGF
Ga0207684_100399275	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDGQIAM
Ga0207684_108814392	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MHDAGARADQIRMLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDGQIAMLKELDKGRPLSL
Ga0207646_101334292	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MQDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAALKELDEGRPLGF
Ga0207646_101716631	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDGQIAMLKEDVRSAS
Ga0209235_10588293	3300026296	Grasslands Soil	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDRQIAVLKELDKGRPLSL
Ga0209055_10014668	3300026309	Soil	MYHDDARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF
Ga0209267_10035548	3300026331	Soil	VLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF
Ga0209057_10103372	3300026342	Soil	MHHDDARAHQIRVLSGVAGHLCSALETLSRSDCDRYTTDLLEMLSAIDGQIAVLEDLDEGRPRGF
Ga0209378_12381931	3300026528	Soil	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSTIDRQIAVLKELDKGRPLGL
Ga0209805_10147224	3300026542	Soil	MYHDDARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLEDLAEGRPRGF
Ga0209684_10153772	3300027527	Tropical Forest Soil	VDKWTTSRLTGTRFRLTKRRMQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA
Ga0209814_100030921	3300027873	Populus Rhizosphere	KRRMAEADARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLTELDEERPRGF
Ga0209814_100308702	3300027873	Populus Rhizosphere	MQNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR
Ga0209465_100412642	3300027874	Tropical Forest Soil	MHAAEERANQIRILSGVAGHLCSALEALAKSDCDWYTTDLREMLSAIDGQIAVLEEIDAGDA
Ga0209481_100090795	3300027880	Populus Rhizosphere	MAEADARAHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLTELDEERPRGF
Ga0207428_1000028323	3300027907	Populus Rhizosphere	MHNATAREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKKLDER
Ga0209382_105467622	3300027909	Populus Rhizosphere	MQKVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR
Ga0209382_114441772	3300027909	Populus Rhizosphere	AHQIRVLSGVAGHLCSALEALSRSDCDWYTTDLLEMLSAIDGQIAVLTELDEERPRGF
Ga0209382_120584642	3300027909	Populus Rhizosphere	HQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKKLDER
Ga0268265_104189793	3300028380	Switchgrass Rhizosphere	MHDTDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGQIAALRELDAGLV
Ga0307504_100953892	3300028792	Soil	MHNADARAHQIRVLSGVAGHLCSALEVLSQSDCDWYTPDLLEMLAAIDGQIAVLRALGSEPS
(restricted) Ga0255310_100137021	3300031197	Sandy Soil	LTKRRIHNADARAHQIRVLSGVAGHLCSALEVLSQSDCDWYTPDLLEMLAAIDGQIAVLRALGSEPS
Ga0307497_101693561	3300031226	Soil	MHDTDARAHQIRVLSGVAGYLCSALEALARSDCDWYTTDLLELLSAIDGRIAALRELDAGLV
Ga0310888_100092162	3300031538	Soil	MPNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR
Ga0318541_101356082	3300031545	Soil	MQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA
Ga0310887_104975871	3300031547	Soil	SSLTGARFRLNKRRMQNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR
Ga0310886_101223171	3300031562	Soil	TGDKWTTSSLTGARFRLNKRRMQNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR
Ga0307469_101347252	3300031720	Hardwood Forest Soil	MDDADARAHQIRVLSGVAGHLCSALDALARSDCDSYTTDLLEMLSAIDGQIAVLRDFDAGRA
Ga0307469_102182352	3300031720	Hardwood Forest Soil	MHDADELARQIRVLSGVAGHLCSAIEALSRSDCDWYTTDLLEMLSAIDGEIAVLREIGARRA
Ga0307469_105022102	3300031720	Hardwood Forest Soil	MHAAEERANQIRILSGVAGHLCSALESLARSDCDWYTSDLLEMLSAIDGQIAVLKQIDAGNA
Ga0307469_112375492	3300031720	Hardwood Forest Soil	MHEAASRAHQIRVLSGVAGHLCSALEVLSRSDCDWYTTDLLEMLSAIDGQIAVLKELDEGRPLGL
Ga0307469_114924611	3300031720	Hardwood Forest Soil	MQNASSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKEIEAR
Ga0307469_124497141	3300031720	Hardwood Forest Soil	MQDAGTRADQIRVLSGVAGHLCSALEVLSRSDCDCYTTDLLEMLSAIDGQIAVLKELDEDRPLG
Ga0307468_1001402362	3300031740	Hardwood Forest Soil	MQNASSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAELKEIEAR
Ga0318526_104332031	3300031769	Soil	DVDKWTTSRLTGTRFRLTKRRMQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA
Ga0318548_101753103	3300031793	Soil	MQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKE
Ga0310892_110259922	3300031858	Soil	KWTTSSLTGARFRLNKRRMQNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEAR
Ga0310884_109604871	3300031944	Soil	RMPNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELEA
Ga0310910_103712081	3300031946	Soil	GTRFRLTKRRMQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA
Ga0318558_101294642	3300032044	Soil	FRWIDVDKWTTSRLTGTRFRLTKRRMQDAEERANQIRILSGVAGHLCSALETLARNECDWYTTDLLEMLSAIDGQIAVLKEIDAGSA
Ga0307470_108501551	3300032174	Hardwood Forest Soil	DGDKWITSWLTPPRFQINKRRMVDADSRAYQIRVLSGAAGHLCSALEALAHSQCDWYTRDLLAMLSAIDGQIAVLRDFAAGRA
Ga0307471_1000715843	3300032180	Hardwood Forest Soil	MQDADARAHQIRVLSGVAGHLCAAIDALARSDCDGYTTDLLEMLSAIDGQIAVLKEIDAGRA
Ga0307471_1002092372	3300032180	Hardwood Forest Soil	MHDAGARADQIRVLSGVAGHLCSALEALSRSDCDWYSTDLLEMLSAIDRQIAVLKELDKGRPLGL
Ga0307471_1005594272	3300032180	Hardwood Forest Soil	MQDAGARADQIRALSGVAGHLCSALEALSRSDCDWYTADLLAMLSAIDRQIAVLKELDEVRPRGF
Ga0307471_1009981852	3300032180	Hardwood Forest Soil	MDDADARAHQIRVLSGVAGHLCAALDALARSDCDSYTTDLLEMLSAIDGQIAVLRDFDAGRA
Ga0307471_1039945531	3300032180	Hardwood Forest Soil	MQDAGTRADQIRVLSGVAGHLCSALEVLSRSDCDWYTTDLLEMLSAIDGQIAVLKELDEGRPLGF
Ga0335084_109480392	3300033004	Soil	MHDADARAHQIRILSGVAGHLCAALEALARSDCDWYTTDLLEMLSAIDGQIAALKELDARPA
Ga0326731_10571982	3300033502	Peat Soil	MHDTDARVHQIRVLSGVAGHLCAALEALTRSDCDWYTTDLLEMLSAIDGEIAALRALDAGLA
Ga0314793_139631_131_313	3300034668	Soil	MQNVSSREHQIRVLSGVAGHLCSALEALSRSECDSYTSDLLAMLSAIDGQIAVLKELDGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters