Metagenome / Metatranscriptome Family F041109

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F041109
Family Type	Metagenome / Metatranscriptome
Number of Sequences	160
Average Sequence Length	51 residues
Representative Sequence	MRAVAIKKGSREKTAGFQEMGTLRCDGCGEEFFIGHNPQSVDKWVAEKQAK
Number of Associated Samples	128
Number of Associated Scaffolds	160

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	54.03 %
% of genes near scaffold ends (potentially truncated)	67.50 %
% of genes from short scaffolds (< 2000 bps)	70.62 %
Associated GOLD sequencing projects	123
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.875 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.250 % of family members)
Environment Ontology (ENVO)	Unclassified (27.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.750 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.46% β-sheet: 22.78% Coil/Unstructured: 60.76%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 160 Family Scaffolds
PF00196	GerE	1.25
PF07311	Dodecin	1.25
PF00857	Isochorismatase	1.25
PF00072	Response_reg	1.25
PF12891	Glyco_hydro_44	0.62
PF00717	Peptidase_S24	0.62
PF00239	Resolvase	0.62
PF01381	HTH_3	0.62
PF14534	DUF4440	0.62
PF13649	Methyltransf_25	0.62
PF12704	MacB_PCD	0.62
PF07883	Cupin_2	0.62
PF02861	Clp_N	0.62
PF06863	DUF1254	0.62
PF04366	Ysc84	0.62
PF02781	G6PD_C	0.62
PF00782	DSPc	0.62
PF04439	Adenyl_transf	0.62
PF04185	Phosphoesterase	0.62
PF06067	DUF932	0.62
PF05227	CHASE3	0.62
PF01471	PG_binding_1	0.62
PF02129	Peptidase_S15	0.62
PF11154	DUF2934	0.62
PF03150	CCP_MauG	0.62
PF00982	Glyco_transf_20	0.62
PF01165	Ribosomal_S21	0.62
PF04226	Transgly_assoc	0.62
PF13570	PQQ_3	0.62
PF03572	Peptidase_S41	0.62
PF04024	PspC	0.62
PF00903	Glyoxalase	0.62
PF08281	Sigma70_r4_2	0.62
PF05402	PqqD	0.62
PF09579	Spore_YtfJ	0.62

COG ID	Name	Functional Category	% Frequency in 160 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.25
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.25
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	1.25
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.62
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.62
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.62
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.62
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.62
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	0.62
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.62
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.62
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.62
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.62
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.62
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.88 %
Unclassified	root	N/A	23.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.88 %
Unclassified	root	N/A	23.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.88 %
Unclassified	root	N/A	23.12 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	63.12 %
Unclassified	root	N/A	23.12 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.25 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	54.38 %
Unclassified	root	N/A	23.12 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.12 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.38 %
Unclassified	root	N/A	23.12 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.50 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.38 %
Unclassified	root	N/A	23.12 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.50 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.38 %
Unclassified	root	N/A	23.12 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	1.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.38 %
Unclassified	root	N/A	23.12 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.88 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	0.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.38 %
Unclassified	root	N/A	23.12 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.88 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.38 %
Unclassified	root	N/A	23.12 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.88 %
unclassified Anaeromyxobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter	0.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	54.38 %
Unclassified	root	N/A	23.12 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.88 %
Anaeromyxobacter sp. SG22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. SG22	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10067391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300001593\|JGI12635J15846_10700440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300002245\|JGIcombinedJ26739_100133136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2347	Open in IMG/M
3300002245\|JGIcombinedJ26739_100299628	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300002459\|JGI24751J29686_10003123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3336	Open in IMG/M
3300002459\|JGI24751J29686_10074499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300003505\|JGIcombinedJ51221_10418318	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300004091\|Ga0062387_101653319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300005176\|Ga0066679_10259211	All Organisms → cellular organisms → Bacteria → Acidobacteria	1122	Open in IMG/M
3300005289\|Ga0065704_10222115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1070	Open in IMG/M
3300005294\|Ga0065705_10633526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300005330\|Ga0070690_101083503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300005344\|Ga0070661_100633734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	866	Open in IMG/M
3300005434\|Ga0070709_10816758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300005445\|Ga0070708_100007975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8482	Open in IMG/M
3300005445\|Ga0070708_101581952	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300005450\|Ga0066682_10949969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300005455\|Ga0070663_101140619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300005467\|Ga0070706_100557730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300005468\|Ga0070707_102349108	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005538\|Ga0070731_10932688	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005547\|Ga0070693_100956701	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300005563\|Ga0068855_101467379	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300005568\|Ga0066703_10884102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300005569\|Ga0066705_10967614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300005602\|Ga0070762_10252357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1097	Open in IMG/M
3300005602\|Ga0070762_10941321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300005921\|Ga0070766_11253248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300006031\|Ga0066651_10557219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300006052\|Ga0075029_100297096	All Organisms → cellular organisms → Bacteria → Proteobacteria	1030	Open in IMG/M
3300006059\|Ga0075017_100373860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300006796\|Ga0066665_10737874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300006797\|Ga0066659_10328759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1177	Open in IMG/M
3300006893\|Ga0073928_10858801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300007258\|Ga0099793_10707695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300009012\|Ga0066710_103872469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300009012\|Ga0066710_103872478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300009088\|Ga0099830_10383126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1135	Open in IMG/M
3300009088\|Ga0099830_11188654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300009088\|Ga0099830_11599193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300009101\|Ga0105247_10505408	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300009628\|Ga0116125_1087287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300009672\|Ga0116215_1519966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300010373\|Ga0134128_10807814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1039	Open in IMG/M
3300010379\|Ga0136449_103131314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300011119\|Ga0105246_10771459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	850	Open in IMG/M
3300012096\|Ga0137389_10358566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1241	Open in IMG/M
3300012189\|Ga0137388_10320676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1424	Open in IMG/M
3300012189\|Ga0137388_11009553	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300012202\|Ga0137363_10157408	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1790	Open in IMG/M
3300012203\|Ga0137399_10217951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1555	Open in IMG/M
3300012203\|Ga0137399_10688267	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300012206\|Ga0137380_10843585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300012351\|Ga0137386_10792380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300012356\|Ga0137371_10831044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300012362\|Ga0137361_11420359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300012363\|Ga0137390_10110595	All Organisms → cellular organisms → Bacteria → Acidobacteria	2719	Open in IMG/M
3300012923\|Ga0137359_11463357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300012957\|Ga0164303_10364636	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	879	Open in IMG/M
3300013306\|Ga0163162_11028798	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300013308\|Ga0157375_13780738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300014495\|Ga0182015_10889826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300015262\|Ga0182007_10016351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2739	Open in IMG/M
3300015372\|Ga0132256_101780030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300015374\|Ga0132255_102308549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300017928\|Ga0187806_1150517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300017943\|Ga0187819_10704292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300017995\|Ga0187816_10177781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300017995\|Ga0187816_10374356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300019361\|Ga0173482_10061508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1256	Open in IMG/M
3300019887\|Ga0193729_1193531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300019888\|Ga0193751_1079167	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1318	Open in IMG/M
3300019890\|Ga0193728_1043549	All Organisms → cellular organisms → Bacteria	2201	Open in IMG/M
3300020006\|Ga0193735_1036425	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300020022\|Ga0193733_1142496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300020580\|Ga0210403_11480776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300020581\|Ga0210399_10368885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1198	Open in IMG/M
3300021046\|Ga0215015_10770268	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300021088\|Ga0210404_10136322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1274	Open in IMG/M
3300021170\|Ga0210400_10511086	All Organisms → cellular organisms → Bacteria → Acidobacteria	992	Open in IMG/M
3300021170\|Ga0210400_11282809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300021171\|Ga0210405_11082803	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300021178\|Ga0210408_10149884	All Organisms → cellular organisms → Bacteria	1847	Open in IMG/M
3300021178\|Ga0210408_10893642	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	692	Open in IMG/M
3300021178\|Ga0210408_11454864	Not Available	514	Open in IMG/M
3300021181\|Ga0210388_11079084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300021404\|Ga0210389_10132212	All Organisms → cellular organisms → Bacteria	1931	Open in IMG/M
3300021432\|Ga0210384_11249893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300021432\|Ga0210384_11455584	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	590	Open in IMG/M
3300021474\|Ga0210390_10939078	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	710	Open in IMG/M
3300021478\|Ga0210402_11048594	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300021559\|Ga0210409_10701317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300021559\|Ga0210409_11257809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300025320\|Ga0209171_10450118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300025419\|Ga0208036_1001452	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9826	Open in IMG/M
3300025498\|Ga0208819_1001286	All Organisms → cellular organisms → Bacteria	13547	Open in IMG/M
3300025908\|Ga0207643_10835461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300025910\|Ga0207684_10055062	All Organisms → cellular organisms → Bacteria → Acidobacteria	3375	Open in IMG/M
3300025937\|Ga0207669_11505221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300026035\|Ga0207703_11349897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300026041\|Ga0207639_11088232	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300026088\|Ga0207641_11637242	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300026354\|Ga0257180_1053257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300026469\|Ga0257169_1055361	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300026497\|Ga0257164_1092345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300027439\|Ga0209332_1002090	All Organisms → cellular organisms → Bacteria	4308	Open in IMG/M
3300027575\|Ga0209525_1075816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300027660\|Ga0209736_1207114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300027684\|Ga0209626_1004459	All Organisms → cellular organisms → Bacteria → Acidobacteria	3109	Open in IMG/M
3300027684\|Ga0209626_1182150	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300027684\|Ga0209626_1216234	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300027875\|Ga0209283_10241025	All Organisms → cellular organisms → Bacteria → Acidobacteria	1199	Open in IMG/M
3300027884\|Ga0209275_10264078	All Organisms → cellular organisms → Bacteria → Acidobacteria	947	Open in IMG/M
3300027895\|Ga0209624_10227800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1239	Open in IMG/M
3300027903\|Ga0209488_10220235	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300027903\|Ga0209488_10458411	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	938	Open in IMG/M
3300028047\|Ga0209526_10105319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1984	Open in IMG/M
3300028047\|Ga0209526_10359316	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	974	Open in IMG/M
3300028047\|Ga0209526_10791669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300029636\|Ga0222749_10386804	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300030007\|Ga0311338_11628005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300031708\|Ga0310686_108570609	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. SG22	1028	Open in IMG/M
3300031962\|Ga0307479_10344562	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300031962\|Ga0307479_11966875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.50%
Host-Associated	Host-Associated	12.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.38%
Plants	Host-Associated → Plants	12.50%
Aquatic	Environmental → Aquatic	8.12%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.25%
Freshwater	Environmental → Aquatic → Freshwater	5.62%
Peat	Environmental → Terrestrial → Peat	2.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.25%
Sediment	Environmental → Aquatic → Sediment	1.25%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.50%
Loam	Environmental → Terrestrial → Soil → Loam	18.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.50%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.25%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.25%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.25%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.62%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.62%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.25%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.88%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.25%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.25%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.25%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.25%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.25%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.25%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.62%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.62%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.62%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.62%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012004	Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental	Open in IMG/M
3300025498	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100673911	3300001545	Forest Soil	MRAVAIKKSSQEKTVGFQEMGTLRCDSCGEEFFIGHRLVSADKWVAERHKWVAE
JGI12635J15846_107004401	3300001593	Forest Soil	MKAVAIKKGQAREKAAGLREMGTLRCDGCGEEFAIGHDPIFADKRVAEKQAGWLEKVLA
JGIcombinedJ26739_1001331364	3300002245	Forest Soil	MRAVAIKKSSREKTIGFQEMGTLRCDGCVEEFFIGHNPKSVDKWVAERQANWL
JGIcombinedJ26739_1002996284	3300002245	Forest Soil	MRGVAIKKNSRGKAVGFQQMGTLRCDVCGEEFFVVHHPASVDKRVA
JGI24751J29686_100031236	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MQSVAIKKGTREKTLGFLEMGTLRCDGCGEEFLIGHNPLSADMQVAERQAKWL
JGI24751J29686_100744991	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MKKSSPEKATGFQEMGTLRCDGCGEEFVIGHDPQSADKWVAEKQAKWLE
JGIcombinedJ51221_104183181	3300003505	Forest Soil	MRAVAIKKGQIREKAAGLQEMGTLRCDGCGEEFFIHHHPASADKSVAETQAKWLEKV
Ga0062387_1016533192	3300004091	Bog Forest Soil	MKAVAIKKGQGQEKAAGFQEMGTLRCDGCGEEFFIGHHPPFVDKWLADKQAHWLEKVLAE
Ga0062593_1032951381	3300004114	Soil	MRAVAIKKSGREKTAGFQEMGTLRCDGCGEEFFIGHNPQSVDKWVA
Ga0066679_102592112	3300005176	Soil	MKAVAIKKGQIREKADADFYEMGTVRCDGCGEEFVISHQPSFTNKWAAEQHR*
Ga0066675_101514173	3300005187	Soil	MKAMAIKKTSREKTEGFQEMGTLRCDACGEEFFIGHHPASVYVHCSFPEV*
Ga0065704_102221153	3300005289	Switchgrass Rhizosphere	MQAVAIKKGSREKTSGFQEMGTLRCDGCGEEFFIGHKPQSADKRNAERQ
Ga0065705_106335262	3300005294	Switchgrass Rhizosphere	MLAVAMKKVSRQRTSGFREMGTLRCDGCGEEFLIGHNPLSADTRVAERQAKWLEKF*
Ga0070690_1010835031	3300005330	Switchgrass Rhizosphere	MRAVAIKKSGREKTTGFQDMGTLRCDGCGEEFFIGHNPQSVDKWVAEKQAKWLEKVLAE
Ga0070661_1006337341	3300005344	Corn Rhizosphere	MLAVAIKKGSRQRTSGFREMGTLRCDGCGEEFLIGHNPLSADTRVAERQAKWLEKF*
Ga0070709_108167582	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MQAVAIKKGSRERTVGFQEMGTFRCDSCGEEFFIGHHPESVDKQGAEKQAKWLEKV
Ga0070708_10000797510	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAKWLEKV
Ga0070708_1015819521	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRAVAIKKGSREKTAGFQEMGTLRCDGCGEEFFIGHNPQSVDKWVAEKQAK
Ga0066682_109499691	3300005450	Soil	MQAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAKWLEKVLAEE
Ga0070663_1011406191	3300005455	Corn Rhizosphere	MQAVAIKKGSREKTSGFQEMGTLRCDGCGEEFFIGHKPQSADKRNAERQAKWLEKV
Ga0070706_1005577302	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VRAVAIKKGQSRQKAAAGFQEMGTLRCDGCGEEFVIWHESAFVDKWVAD*
Ga0070707_1023491082	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKAVAIKKSSGEKAAGFQEMGNLRCDGCGEEFFIGHHFASVDKWVAEKPAKWLEKVLAE
Ga0070731_109326882	3300005538	Surface Soil	MRAIAIKKGSREKTTGFQEMGILRCDGCGEEFFIGHAPPSLDKRAAEKQAKWLEK
Ga0070732_103513451	3300005542	Surface Soil	MKAVAIKRGQSREKAAGFQEMGTLRCEGCGEEFSINHHPAFVDKW
Ga0070693_1009567011	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MGAVAIKKSSREKAAGLQEMGTLRCDACGEEFILGHNPASVDRWIAEEQAKLLEKVLAE
Ga0068855_1014673791	3300005563	Corn Rhizosphere	MKKSSPEKATGFQEMGTLRCDGCGEEFVIGHDPQSADKWVAEKQAKWLEKVLADEH
Ga0066703_108841022	3300005568	Soil	MQAVAIKKTSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAKWLEKVLAEE
Ga0066705_109676142	3300005569	Soil	MQAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAK
Ga0066708_101314503	3300005576	Soil	MKAMAIKKTSREKTEGFQEMGTLRCDACGEEFFIGHHPAS
Ga0070762_102523571	3300005602	Soil	MQALAIKKGSREKTTGFQEMGTLRCDGCGEEFFIGHNPQSIDKRVAEKQAKWLERV
Ga0070762_109413211	3300005602	Soil	MKVETKKGGQEETAGFQEMGTLRCDCCGEEFVIGHDPTLVDKWLAEK*
Ga0070766_112532482	3300005921	Soil	MKAVAIKKGQGREKAEGFQEMGTLRCDGCGEEFLIGHHPASVDKWVAEKQAKWLEKVLAE
Ga0066651_105572192	3300006031	Soil	MRAVAIKKTSREKTEGFQEMGTLRCDACGEEFFIGHHPASVDKWVAERQAKWLEKVLAEE
Ga0075029_1002970963	3300006052	Watersheds	MKAVAIKKSSREKTLGFQEMGTPRCDLCGEEFFIGHNPAWVDNKWVAEKQAKWLEKV
Ga0075017_1003738605	3300006059	Watersheds	MIAVAIKKSSREKTAGFQEMGTLRCDLCGEEFFIGHNPA
Ga0066665_100490411	3300006796	Soil	MQAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPKS
Ga0066665_107378741	3300006796	Soil	MQAVAIKKTSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQ
Ga0066659_103287593	3300006797	Soil	MQAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAKWLE
Ga0073928_108588012	3300006893	Iron-Sulfur Acid Spring	MRAVAIKKSSREKTIGFQEMGTLRCNGCGEEFFIGHNPTSVDNGVAEKQAKWLEKVLAEE
Ga0099793_107076951	3300007258	Vadose Zone Soil	MRAVAIKKSSREKTIGFQEMGTLRCDGCCEEFFIGHNPQSVDKWVAEKQAKW
Ga0066710_1038724692	3300009012	Grasslands Soil	MTAVAIKKGQSREADFQEMGTLRCDGCGEEFIIGHQTAFADKWLADRQAHWLG
Ga0066710_1038724782	3300009012	Grasslands Soil	MRAVAIKKGQSRAADFQEMGTLRCDGCGEEFIIGHQTAFADKWLADRQAHWLG
Ga0099830_103831263	3300009088	Vadose Zone Soil	MRAVAVKKSSREKTMGFQEMGTLRCDGCGEEFFIGHNPQSVDKWVAEKQAKWLE
Ga0099830_111886542	3300009088	Vadose Zone Soil	MRAVAIKKSSREKATGFQEMGSLRCDLCGEEFFIGHNPGSVDKWVAEK*
Ga0099830_115991931	3300009088	Vadose Zone Soil	MTTAMGAVAIKKGQSRQKAAADFQEMGTVRCDGCGEEFVIGHHLASVNKWVADR*
Ga0105247_105054082	3300009101	Switchgrass Rhizosphere	MQAVAMKKSSPEKATGFQEMGTLRCDGCGEEFVICHDPQSADKWVAEKQAKWLEKY
Ga0099792_100572152	3300009143	Vadose Zone Soil	MAIKKSSLEKTIGFEEMGTLRCDGCGEEFFIGHNPKSADKWVA
Ga0105237_113727412	3300009545	Corn Rhizosphere	MKAVAIKKSSREKTLGFQEMGTLKCDSCGEEFFIGHNPA
Ga0116125_10872871	3300009628	Peatland	MRAAVAIKKSSSEKTTGFHEMGTLRCDGCGEEFFIGHRPESVDMRAAEKQAKW
Ga0116215_15199662	3300009672	Peatlands Soil	MKAVAIRRGQGQEKAAGFQEMGTLRCDGCGEEFFIGHDPAFVDKWLADR
Ga0134125_114955791	3300010371	Terrestrial Soil	MKAVAIKKSSREKTLGFQEMGTLKCDSCGEEFFIGHNPAAVDKLAA
Ga0134128_108078141	3300010373	Terrestrial Soil	MRAVAIKKSGREKTTGFQDMGTLRCDGCGEEFFIGHNPQTVDKWVAEKQAKWLEKVLAEE
Ga0136449_1031313143	3300010379	Peatlands Soil	MRAVAIKKSSREKTADFREMGTLRCDGCGEEFFIGHSPQSVDKGV
Ga0105246_107714591	3300011119	Miscanthus Rhizosphere	MIAVAIKKSSREQTAGFQEMGTLRCDLCGEEFFIGHNPAWVDKRLAEKQAKWLEK
Ga0150983_142065341	3300011120	Forest Soil	MSAVAIKKGQSGEKAMGLREMGTLRCEGCGEEFVVNHEPGLFDTA
Ga0137392_107848413	3300011269	Vadose Zone Soil	MRAVAIKKGSREKAIGFQEMGTLRCDGCGEEFFIGH
Ga0137392_109946781	3300011269	Vadose Zone Soil	MKAVAIKKSSREKTVGFLEMGTLRCEVCGEDFFIGHN
Ga0120134_11165532	3300012004	Permafrost	MGAVAIKKSSREKAVGFQEMGNLRCDGCGEEFFIGHSPGS
Ga0137389_102300772	3300012096	Vadose Zone Soil	MQAVAIKKSSRERTTGFQEMGTLRCDGCGEEFFIGHNPKSVD
Ga0137389_103585661	3300012096	Vadose Zone Soil	MKAVAIKKGQARETAAADFFEMGTVRCDGCGEEFVIAHQPAFVDKWVAEKQA
Ga0137388_103206764	3300012189	Vadose Zone Soil	MGAAVKAVAMKKGQAREKAAADFLEMGTVRCDGCGEEFVIAHQPAFVDRWVAERQAVWLERVLS
Ga0137388_110095532	3300012189	Vadose Zone Soil	MKAVAIKKSSREKTAGLQEMGTLRCDGCGEEFILGHNPTSVDRWVAEKQA
Ga0137363_101574083	3300012202	Vadose Zone Soil	MKAVAIKKSSREKTVGFQEMGTLRCDSCGEEFFIGHNPASVDKGVAEKQAK
Ga0137399_102179511	3300012203	Vadose Zone Soil	MQAVAIKKSSRERTTGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAKWLEK
Ga0137399_106882671	3300012203	Vadose Zone Soil	MKTIAIKKGQNREKVAGLQEMGTVRCDGCGEEFLIGHPPASADKKIAETQAHWLEKVL
Ga0137380_108435852	3300012206	Vadose Zone Soil	MRAVAIKKGSREKAIGFQEMGTLRCDGCGEEFFIGHNPQSVDKWVAERQAK*
Ga0137386_107923803	3300012351	Vadose Zone Soil	MRAVAIKKGSREKAIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAE
Ga0137371_108310442	3300012356	Vadose Zone Soil	MQAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAKWLEKVL
Ga0137361_114203592	3300012362	Vadose Zone Soil	MKAVAIKKSSREKTVGFLEMGTLRCDVCGEDFFIGHNPASVDKGVAEKQAKWLEKVLAE
Ga0137390_101105951	3300012363	Vadose Zone Soil	MRAVAIKKGQSREKVAGFQEMGALRCDGCGEEFFLMHHPTFVDK
Ga0137359_114633571	3300012923	Vadose Zone Soil	MGAVAIKKSSREKTAGFQEMGTLRCDSCGEEFFIGHSPASVDKSVAEKQAKWLEKVL
Ga0164303_103646361	3300012957	Soil	MLAVAIKKGSREKTLDFQEMGTVRCDGCGEEFFIGHDPQSADRRVAERQARWLEKVLSV*
Ga0164299_108463892	3300012958	Soil	MLAVAIKKGSREKTLDFQEMGTVRCDGCGEEFFIGH
Ga0163162_110287981	3300013306	Switchgrass Rhizosphere	MGAVAIKKSSREKAAGLQEMGTLRCDGCGEQFILGHNPTSVDRWGAEKQAKWLEK
Ga0157375_137807382	3300013308	Miscanthus Rhizosphere	MRAVAIKKSGREKTTGFQDMGTLRCDGCGEEFFIGHNPQSVDKWVAEKQA
Ga0182015_108898261	3300014495	Palsa	MKAVAIKKGQNREKAPDFQEMGTLRCDGCGEEFVIGHDPAFADKRVAEKQAGW
Ga0182007_100163515	3300015262	Rhizosphere	MRAVAIKKSGREKTTGLQEMGTLRCDGCGEEFFIGHNPQSVDKWVAEK
Ga0132256_1017800301	3300015372	Arabidopsis Rhizosphere	MLAVAIKKGSREKTLDFQEMGTVRCDGCGEEFFIGHDPQSADRRVAERQARW
Ga0132255_1023085491	3300015374	Arabidopsis Rhizosphere	MLAVAIKKGSREKTSGFREMGTLRCDGCGEEFLIGHNPLSADTRVAERQAK
Ga0187806_11505172	3300017928	Freshwater Sediment	MRAVAIKNGLGQEKAAGFEEMGMLRCDGCGEKFFIEHYPASAAQ
Ga0187819_107042921	3300017943	Freshwater Sediment	MKAVAIKKGQSREKAAGFQEMGTLRCDGCGEEFVIGQHPTFIDQRLADEQA
Ga0187816_101777813	3300017995	Freshwater Sediment	MRAVAIKKGQSREKAVGFREMGTLRCEGCGEEFFIDHHPAFVDKWLAEKQA
Ga0187816_103743561	3300017995	Freshwater Sediment	MKAVAIKKGQSREKAAGFQEMGTLRCDGCGEEFVIGQHPTFIDQRLADEQAHWLERV
Ga0187871_108142632	3300018042	Peatland	MRAVAIKKGQSREPAAGLQEMGTLRCEGCGEEFVIGHD
Ga0066669_102047311	3300018482	Grasslands Soil	MRAVAVKKTSREKTIGFQEMGTLRCDNCGEEFLIGH
Ga0066669_119517692	3300018482	Grasslands Soil	MKAVAIKKSSRVKAEGLQEMGTLRCDGCGEEFFIGHSPGSVDKWV
Ga0173482_100615084	3300019361	Soil	MQSVAIKKGTREKTLGFLEMGTLRCDGCGEEFLIGHNPLSADMQVAERQAKWLEKVLA
Ga0193707_10705771	3300019881	Soil	MRAVAIKKSSREKSAGFQEMGTLRCDGCGEEFFLGHNPASADRWVAE
Ga0193729_11935311	3300019887	Soil	MKAVAIKKGQSQEKAAGFQEMGIVRCDACGEEFIIGHQTAFVDMWVAYQQAYWLE
Ga0193751_10791671	3300019888	Soil	MQAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQ
Ga0193728_10435492	3300019890	Soil	MRAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGQDAKSVVKGFAEKQAKWLEKVLAEE
Ga0193730_11866491	3300020002	Soil	MLAVAIKKGSREKTLDFQEMGTVRCDGCGEEFFIGHNPQS
Ga0193735_10364253	3300020006	Soil	MLAVAIKKGSREKTLDFQEMGTVRCDGCGEEFFIGHNPQSADRRVA
Ga0193733_11424961	3300020022	Soil	MRAVAIKTSSREKADGFQEMGTLRCDGCGEEFFIGHSPASVDKWVAEKQAK
Ga0210403_114807761	3300020580	Soil	MKAVATKKGLGQEKPEGFREMGTLRCDGCGEEFSIGHDPAFVDKWLAEKQAYWL
Ga0210399_103688852	3300020581	Soil	MRAVAIKKGQSREQAAGLQEMGTLRCEGCGEEFVIGHDLAFVDRWLADKQAHWLERVL
Ga0215015_107702681	3300021046	Soil	MKAVAIKKGQSKEIAPDAHEMGTVRCDGCGEEFLINHPPSSADKWVAEKQARWLERVLAEAVSYTHLRAH
Ga0210404_101055951	3300021088	Soil	MQAVAIKKGSREKTTGLQEMGTLRCDGCGEEFFIGHNPQSVDK
Ga0210404_101363222	3300021088	Soil	MRAVAIKKGSREKTIGFQEMGILRCDGCGEEFFIGHNPQLVDKRVAEKQAQWLEKV
Ga0210400_105110863	3300021170	Soil	MKALGIKKGQNREKAAGFQEMGTLRCDGCGEEFIICHHPASVDKWVAEKQAKWLEKVLA
Ga0210400_112828092	3300021170	Soil	MRTVAIKKSSRETTIGFQEMGTLRCDDCGEEFLICHNPQSVDKWV
Ga0210400_114114711	3300021170	Soil	MQAVAIKKSSREKTRGFQEMGTLRCDGCGEEFFIGHN
Ga0210405_110828031	3300021171	Soil	MRAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPESVDKWVAEKQAKWLERALAEE
Ga0210405_113189422	3300021171	Soil	MRAVAIKKGQSREQSAGFQEMGTLRCEGCGEEFVIGHDLAFVDK
Ga0210408_101498841	3300021178	Soil	MREAAAGFQEMGTLRCDGCGEEFLIGHHPAFVDKWLAEKQAHWLERVLAEEHE
Ga0210408_108936422	3300021178	Soil	MQALAIKKGSREKTTGFQEMGTLRCDGCGEEFFIGH
Ga0210408_114548642	3300021178	Soil	MKAVAIKKGQGREKAEGFQEMGTLRCDGCGEEFLIGHHPASVDKWVAEKQAKWLEKVL
Ga0210388_110790841	3300021181	Soil	MRAVAIKKGQSREQAAGLQEMGTLRCEGCGEEFVIGHDLAFVDKWLADKQAHW
Ga0210389_101322124	3300021404	Soil	MPQMGAVAIKKGQSREKAMGLQEMGTLRCDGCGEEFVVNHEPALVDKRLAEKQASWLER
Ga0210384_110261911	3300021432	Soil	MWAVAIKKSSREKTTGFQEMGTLRCDGCGEEFFIG
Ga0210384_112498931	3300021432	Soil	MKAVEMSMRAVAIKKGQGQEKAADFEEMGTLRCDGCGEEFFIVHHPAFADKWLAEKQAHWLERVL
Ga0210384_114555841	3300021432	Soil	MQAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPKSVDKWAAEKQAK
Ga0210384_115147161	3300021432	Soil	MRAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNP
Ga0210390_109390782	3300021474	Soil	MQALAIKKGSREKTTGFQEMGTLRCDGCGEEFFIGHNPQSIDTRVAEKQAKWLERV
Ga0210402_110485942	3300021478	Soil	MRAVAIKKGSREKTTGLQEMGTLRCDGCGEEFLIGHSPQSVDKRAAERQAMWLEKVLA
Ga0210409_107013171	3300021559	Soil	MRAVAIKKTSREKTTGFQEMGTLRCDGCGEEFFIGHDPKSVDGRVAAKQAKW
Ga0210409_112578091	3300021559	Soil	MRAVAIKKSSREKTIGFQEMGTLRCDGCGEEFFIGHNPESVDKWVAEKQAKWLERAL
Ga0224545_10096561	3300022881	Soil	MRAVAIKKGGREKTTGFQEMGTLRCDGCGEEFFNGHN
Ga0209171_104501182	3300025320	Iron-Sulfur Acid Spring	MRAVAIKKSSLEKTIGFQEMGTLRCDGCGEEFFIGHKPKSADKRVAEKQAKWLE
Ga0208036_100145211	3300025419	Peatland	MKALAIKKGQSREKAAGFQEMGTLRCDGCGEEFVIGQRPAFVDMKIAEKQAAWLEKV
Ga0208819_10012861	3300025498	Peatland	MKALAIKKGQSREKAAGFQEMGTLRCDGCGEEFVIGHRPGFVDKKIAEKQAAWLEKVLAE
Ga0207643_108354611	3300025908	Miscanthus Rhizosphere	MKKSSPEKATGFQEMGTLRCDGCGEEFVIGHDPQSADKWVAEKQAKWLEKVLADEHERDR
Ga0207684_100550621	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSAAVRAVAIKKGQSRQKAAAGFQEMGTLRCDGCGEEFVIWHESAFVDKWVAD
Ga0207684_102642641	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRAVAIKKSSREKALGFQEMGTLRCDGCGEEFFIGHDPQSV
Ga0207654_113296751	3300025911	Corn Rhizosphere	MGAVAIKKSSREKAAGLQEMGTLRCDACGEEFILGHNPTS
Ga0207669_115052211	3300025937	Miscanthus Rhizosphere	MQSVAIKKGTREKTLGFLEMGTLRCDGCGEEFLIGHNPLSADMQVAERQAKWLEKVLAE
Ga0207703_113498972	3300026035	Switchgrass Rhizosphere	MQAVAIKKGSREKTSGFQEMGTLRCDGCGEEFFIGHKPQSADKRNAERQAKWLE
Ga0207639_110882321	3300026041	Corn Rhizosphere	KGSRQRTSGFREMGTLRCDGCGEEFLIGHNPLSADTRVAERQAKWLEKF
Ga0207641_116372422	3300026088	Switchgrass Rhizosphere	MKAVAIKKSSREKTLGFQEMGTLKCDSCGEDFFIGHNPAAVDKLAAEIQAKWLEKV
Ga0257180_10532572	3300026354	Soil	MKAVAIKKSSREKTVGFQEMGTLRCDSCGEEFFIGHNPASVDKGVAEKQAKWLEK
Ga0257169_10553612	3300026469	Soil	MGLAIKKGQTRVKAEGLQEMGTLRCDGCGEEFILGHNPASVDKWVAEKQAKWLEK
Ga0257164_10923451	3300026497	Soil	MIAVAIKKSSREKTAGFQEMGTLRCDLCGEEFFIGHNPKWVDKRVAEKQAKWLEKVL
Ga0209332_10020907	3300027439	Forest Soil	MRAVAIKKGQSREKAMGLQEMGTLRCDSCGEEFVVNHEPALVDKRLAEKQAGWLERVL
Ga0209115_10502862	3300027567	Forest Soil	MGAVAIKKGQSREKAMGLQEMGTLRCDGCGEEFVVNHEPA
Ga0209525_10758162	3300027575	Forest Soil	MRAVAIKKGQGHEKAPGLQEMGTLRCDGCGEEFVVNHEPALVDTGLAEKQAGWLEKVLAD
Ga0209736_12071142	3300027660	Forest Soil	MRAVAIKKSSRETTTGFQEMGTLRCDGCGEEFVIGQNPQSTDKRVAEKQAR
Ga0209626_10044592	3300027684	Forest Soil	MRAVAVKKSSRERTIGFQEMGTLRCDGCGEEFVIGQNPQSTDKRVAEKQAR
Ga0209626_11821501	3300027684	Forest Soil	LGKIQEMKPVAIKKGEIRDEFAGFREMGILRCDGCGEEFVIGHDPAFADKRVAEKQASWLEKVLAE
Ga0209626_12162341	3300027684	Forest Soil	MGAVAIKKGQSREKAMGLQEMGTLRCDGCGEEFVVNHDPALVDKRLAEKQASWLE
Ga0209283_102410251	3300027875	Vadose Zone Soil	MTTVAKAVAIKKGQTREKPAADCQEMGTVRCDGCGEEFVIGHQAAFVDKLAAEKQAYWLE
Ga0209275_102640782	3300027884	Soil	MKVETKKGGQEETAGFQEMGTLRCDCCGEEFVIGHDPTLVDKWLAEK
Ga0209624_102278001	3300027895	Forest Soil	MGAVAIKKGQSREKAMGLQEMGTLRCDGCGEEFVVNHEPALVDKRLAEK
Ga0209488_102202351	3300027903	Vadose Zone Soil	MGAVAIKKSSREKTAGFREMGTLRCDSCGEEFFIGHSPASVDKSVAEKQAKW
Ga0209488_104584112	3300027903	Vadose Zone Soil	MKAVAIKKSSRETTVGFQEMGTLRCDRCGEEFFIGHNPASVDKGVAEKQAKWLEKVL
Ga0209526_101053191	3300028047	Forest Soil	MRAVAIKKSSQEKTVGFQEMGTLRCDSCGEEFFIGHRLVSADKWVAERHKWVAER
Ga0209526_103593162	3300028047	Forest Soil	MQAVAIKKTSREKTTGFHEMGTLRCDGCGEEFFIGHNPNSVDKSVAEKQAKWL
Ga0209526_107916691	3300028047	Forest Soil	MQAVAIKKSSREKTTGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAKWLEKVLAEE
Ga0222749_103868041	3300029636	Soil	MRAVAIKKGSREKTMGFQEMGVLKCDGCGEEFFIGHNPLSVDKRLAEKQAKWLEKVLAEE
Ga0311338_116280052	3300030007	Palsa	MRAVAIKKSSREKTADFQEMGTLRCDGCGEEFFIGHNPRSVDKSVAEKQA
Ga0311353_107483021	3300030399	Palsa	MRAVAIKKSSREKTADFQEMGTLRCDGCGEEFFIGHNP
Ga0311372_108161061	3300030520	Palsa	MRAVAIKKSSREKTTGFQEMGTLRCDGCGEAFFIGHNP
Ga0310686_1085706091	3300031708	Soil	MRAVAIKKGQSREKAVGSREMGTLRCEDCGEEFSISHDPVFADKWLAEKQAHWLEKVLA
Ga0307476_109624671	3300031715	Hardwood Forest Soil	MKAVAIKRGQSREKAAGFQEMGTLRCEGCGEEFSINHH
Ga0307469_117579241	3300031720	Hardwood Forest Soil	MRALAIKKGSREKTTGLQEMGTLRCDDCGEEFFIGHDPQSVDKQVVE
Ga0307468_1023817752	3300031740	Hardwood Forest Soil	MKAVAIKKGQSREKAAGFQEMGIVRCDASGEEFMIGHETAFVDM
Ga0307479_103445623	3300031962	Hardwood Forest Soil	VAIKKGSRERTISFQEMGTLRCDGCGEEFFIGHHPDSVDKQVAEKHAIWLENFFGGRARA
Ga0307479_119668752	3300031962	Hardwood Forest Soil	MKAVAIKKGQSWEQVAGFQEMGTLRCDGCGEEFVIGHQPASADNKIAEKTGTLA
Ga0307471_1004615201	3300032180	Hardwood Forest Soil	MIAVAIKKSSREKTAGFQEMGTLRCDLCGEEFFIGHNPAWVD
Ga0307472_1019276431	3300032205	Hardwood Forest Soil	MRAVAIKKGSREKTIGFQEMGTLRCDSCGEEFFIGHKPQSV
Ga0307472_1026516912	3300032205	Hardwood Forest Soil	MRAVAIKKSSREKTVGFHEMGTLRCDGCGEEFFIGHNPTSVDK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F041109

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences