NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F040874

Metagenome / Metatranscriptome Family F040874

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F040874
Family Type Metagenome / Metatranscriptome
Number of Sequences 161
Average Sequence Length 65 residues
Representative Sequence MESTVTQRSAIYFKRHKGSKGRAALFQQLRASPANQTSDVKQQTFGNAYIAQGLPSGQLSLRGFA
Number of Associated Samples 149
Number of Associated Scaffolds 161

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 27.50 %
% of genes near scaffold ends (potentially truncated) 51.55 %
% of genes from short scaffolds (< 2000 bps) 87.58 %
Associated GOLD sequencing projects 142
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.031 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(20.497 % of family members)
Environment Ontology (ENVO) Unclassified
(30.435 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.342 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116
1SwRhRL2b_0672.00007410
2FA3_02041810
3ICChiseqgaiiFebDRAFT_110875352
4F14TC_1004577082
5JGI11615J12901_105100551
6JGI10216J12902_1087096742
7Ga0062590_1024282262
8Ga0066672_102068862
9Ga0066680_109302391
10Ga0066673_100992981
11Ga0066685_103216702
12Ga0066678_100244544
13Ga0065704_100401543
14Ga0065704_104090662
15Ga0065712_100085512
16Ga0065715_100211401
17Ga0070675_1001955513
18Ga0070671_1017209281
19Ga0070709_102086862
20Ga0070709_116971302
21Ga0070714_1010760381
22Ga0070713_1010350302
23Ga0070711_1001290822
24Ga0066689_101821154
25Ga0070662_1007287893
26Ga0068867_1001319581
27Ga0070699_1012130641
28Ga0070699_1015194311
29Ga0070697_1000366303
30Ga0070697_1010724372
31Ga0066697_103549791
32Ga0066701_100171103
33Ga0066661_100149813
34Ga0066692_104198981
35Ga0066704_109168991
36Ga0066698_109688352
37Ga0066670_107558672
38Ga0068855_1016665481
39Ga0066702_102154102
40Ga0066702_102412442
41Ga0066708_104688951
42Ga0070715_110687262
43Ga0070716_1010509211
44Ga0070712_1007227191
45Ga0079222_114684772
46Ga0066665_103026742
47Ga0079220_102211292
48Ga0075425_1022597822
49Ga0075434_1009630642
50Ga0104326_1044222
51Ga0105247_105699111
52Ga0066709_1014378623
53Ga0105241_123725881
54Ga0134070_101547631
55Ga0134109_104134631
56Ga0134067_101422461
57Ga0134066_100449192
58Ga0134125_106904502
59Ga0134124_110000211
60Ga0134122_120297861
61Ga0134121_108811722
62Ga0138514_1001009521
63Ga0137382_102237121
64Ga0137365_109882632
65Ga0137363_107639492
66Ga0137374_100858714
67Ga0137362_114992932
68Ga0137376_114167601
69Ga0137379_111530731
70Ga0137378_108448271
71Ga0137378_112424802
72Ga0137370_102051471
73Ga0137367_106147701
74Ga0137369_100197174
75Ga0137371_109844901
76Ga0137361_105780192
77Ga0137361_112952551
78Ga0137373_110642671
79Ga0137397_101523932
80Ga0137395_100646054
81Ga0137359_113071171
82Ga0137413_111571061
83Ga0137407_101785531
84Ga0137407_105246811
85Ga0164298_113463282
86Ga0164303_103975562
87Ga0164308_114040411
88Ga0164304_108773281
89Ga0157307_10279982
90Ga0157378_111174652
91Ga0134079_102819821
92Ga0157377_110694811
93Ga0137403_103780723
94Ga0132258_119211933
95Ga0132257_1025751491
96Ga0134083_100814683
97Ga0184605_103103511
98Ga0184608_101374801
99Ga0184620_101738382
100Ga0184619_100401552
101Ga0184619_102840611
102Ga0184619_105369751
103Ga0184618_103021692
104Ga0066662_114537611
105Ga0173482_104522042
106Ga0193722_10652812
107Ga0193723_10626662
108Ga0193707_10356872
109Ga0193729_12594101
110Ga0193751_11000912
111Ga0193731_10182511
112Ga0193730_10136193
113Ga0210403_104234962
114Ga0210381_103890891
115Ga0210382_105007351
116Ga0210404_102077792
117Ga0193719_100938782
118Ga0193709_10034541
119Ga0182009_100858342
120Ga0222625_10254762
121Ga0224452_12831681
122Ga0222623_100071402
123Ga0207697_103135472
124Ga0207697_105180392
125Ga0207684_110710731
126Ga0207646_112736711
127Ga0207700_116140441
128Ga0207691_106025642
129Ga0209350_11208031
130Ga0209234_10112414
131Ga0209688_11028571
132Ga0209265_11422991
133Ga0209153_11464702
134Ga0209154_10543521
135Ga0209470_12464981
136Ga0209473_11572071
137Ga0209267_10497111
138Ga0209808_11389871
139Ga0209690_10572142
140Ga0209160_12520321
141Ga0209056_100681194
142Ga0209805_10011651
143Ga0209577_100854741
144Ga0209577_101210144
145Ga0179587_105769842
146Ga0207625_1060372
147Ga0207601_1095131
148Ga0209968_10813713
149Ga0209422_10816821
150Ga0209177_100431242
151Ga0268264_126018881
152Ga0307293_100582181
153Ga0307288_102884451
154Ga0307282_102814252
155Ga0307302_106601451
156Ga0307312_101538222
157Ga0307278_100246132
158Ga0307277_102072351
159Ga0307469_113737081
160Ga0307475_110822411
161Ga0310811_108246262
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.46%    β-sheet: 0.00%    Coil/Unstructured: 50.54%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035404550556065MESTVTQRSAIYFKRHKGSKGRAALFQQLRASPANQTSDVKQQTFGNAYIAQGLPSGQLSLRGFASequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
95.0%5.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Groundwater Sediment
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Grasslands Soil
Grass Soil
Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Soil
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
4.3%14.9%14.9%3.7%20.5%8.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
SwRhRL2b_0672.000074102162886007Switchgrass RhizosphereMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNGYITQGLPSGQLLLKGFAS
FA3_020418102170459023Grass SoilMQPTAKQSSVIYFKRHKGSKCRAALFRQLRASPANQTRDVKQQTFGNGNIAQGLQSGQLR
ICChiseqgaiiFebDRAFT_1108753523300000363SoilMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNRYIPQGLPSGQLLLEGRILEPRDDA
F14TC_10045770823300000559SoilMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNRYIPQGLPSGQLLLEGFAS*
JGI11615J12901_1051005513300000953SoilMKPTVQQSSAIYFKRHKGSKSRAALFRQLRASPANQTHDVKQQTFGNAHIGQGLRSEQPWLRGLEV
JGI10216J12902_10870967423300000956SoilMESTVAQRSAIYFKRHKGSKGRAALFRQLRASPPNQSRNPKQQLFGYADIGQELPSGQRLLRGFAT*
Ga0062590_10242822623300004157SoilKSRAALFRQLRASPANQTHDVKQQTLDNAHIGQGLRSEQPWLRGLEV*
Ga0066672_1020688623300005167SoilMQSTVTQRSAIYFKRHKGSKGRAALFRQLRALRANQTRDVKQQTFGNAYVTQGLPSGQLSLKGFAS*
Ga0066680_1093023913300005174SoilMESTVMQRSAVYFKRHKGSKGRAALFRQLRALRANQTRDVKQQTFGNAYLTQGLPSGQLSLKGFAS*
Ga0066673_1009929813300005175SoilVTQRSAIYFKRHKGSKGRAALFRQLRASPANLIRDLKQQTFGKAYITQGLPSGQLSLRGFAS*
Ga0066685_1032167023300005180SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPANLIRDLKQQTFGKAYITQGLPSGQLSLEGSHLRTRGDAIRTRGQA
Ga0066678_1002445443300005181SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPANLIRDLKQQTFGKAYITQGLPSGQLSLEGSHLRTRGDAI
Ga0065704_1004015433300005289Switchgrass RhizosphereMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNGYIPQGLPSGQLLLEGFAS*
Ga0065704_1040906623300005289Switchgrass RhizosphereTDMQLTVQQSSANYFKRHKGSKHRAALFRQLRASAADQTCDVKQQTFGNAFIGQRLRSGQLWLRGFEFEYAPGDATRKRG*
Ga0065712_1000855123300005290Miscanthus RhizosphereMESIATQKSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNGYIPQGLPSGQLLLKGFAS*
Ga0065715_1002114013300005293Miscanthus RhizosphereMESTVMQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLPSGQLSLKGFALRTSGDATRTR
Ga0070675_10019555133300005354Miscanthus RhizosphereMQRSAIYFKRHKGSKGRAALFRRLRAPRANRDVKQQTFGNAYVTQDLPSGQLSLKGF
Ga0070671_10172092813300005355Switchgrass RhizosphereLNTQANEMESTVAQRSAIYFKRHKGSKGRAALFRQLRASPPNQRRDPKQQLFGCADIGQELPSGQRLLEVSQLRIRVAVHPANVIR
Ga0070709_1020868623300005434Corn, Switchgrass And Miscanthus RhizosphereMESTITQRSAIYFRRHKSSKRRAALFRQLRASPPNQSRDPKQQMFGYAEIGQELPSGQRLLRGFAT*
Ga0070709_1169713023300005434Corn, Switchgrass And Miscanthus RhizosphereMESTVAQMSAIYFKQHKGSKGRAALFRQLRASPPNQRRDPKQQLFGCADIGQELPSGQRLLRGFAT*
Ga0070714_10107603813300005435Agricultural SoilMESTVMQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLPSGQLSLKVRILEPAV
Ga0070713_10103503023300005436Corn, Switchgrass And Miscanthus RhizosphereMESTVMQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLPSGQLSLKGFALRTSGDATRTRGQ
Ga0070711_10012908223300005439Corn, Switchgrass And Miscanthus RhizosphereMESIATQRSAIYFKRHKRSKGRAALFRQLRASAANQTRDVQQQMFGNGYITQGLPSGQLLLKGFAS*
Ga0066689_1018211543300005447SoilMEPIVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTDDVKQQTFGNAHIAQGLRSGQLWLRGLEV*
Ga0070662_10072878933300005457Corn RhizosphereMQPTVQQSSANYFKRHKGSKHRAALFRQLRASAADQTSDVKQQAFGNVFIGPRLRSGQLWLRGFEFEYARGDATRKRG*
Ga0068867_10013195813300005459Miscanthus RhizosphereNEMESTVMQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLPSGQLSLKGFAS*
Ga0070699_10121306413300005518Corn, Switchgrass And Miscanthus RhizosphereMSVGDIKTKPNMKLTLTQSSALYFNRHKGSKRRAALFRQLRALPTNQTGDVKQQTFGNAYIAQVLRSGQQSLRGFAS*
Ga0070699_10151943113300005518Corn, Switchgrass And Miscanthus RhizosphereMESTVTQRSAIYFKRHKGSKGRAALFQQLRASPANQTSDVKQQTFGNAYIAQGLPSGQLSLRGFA
Ga0070697_10003663033300005536Corn, Switchgrass And Miscanthus RhizosphereMKLTLTQSSALYFNRHKGSKRRAALFRQLRALPTNQTGDVKQQRFGNAYIAQVLRSGQQ*
Ga0070697_10107243723300005536Corn, Switchgrass And Miscanthus RhizosphereMESTVTQRSAIYFKRHKGSKGRAALFRRLRTSRANRDVKQQTFGNAYVTQDLPSGQLSLKGRIL
Ga0066697_1035497913300005540SoilSAIYFKRHKGSKSRAALFRQLRASLANQTHDVKQQTFGNAHIAQGLRSGQLWLRGLEV*
Ga0066701_1001711033300005552SoilMEPTVQQSSAIYFKRYKGSKSRGALFRQLRASLANQIHGVKQQTLGNAHIAQGLRSGQLWLRGLEV*
Ga0066661_1001498133300005554SoilMEPIVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTHDVKQQTFGNAHIAQGLRSGQLWLSGLEV*
Ga0066692_1041989813300005555SoilMEPTVQQSSTIYFKRYKGSKSRAALFRQLRASLANQIHDVKQQTFGNAHIAQGLRSGQPWLTGLEV*
Ga0066704_1091689913300005557SoilMESTVMQRSAVYFKRHKGSKGRAALFRQLRALRANQTRDVKQQTFGNAYVTQDLPSGQLSLKGFAS*
Ga0066698_1096883523300005558SoilMEPIVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTDDVKQQTFGNAHIAQGLRSGQLWLRGLEL*
Ga0066670_1075586723300005560SoilMESIATKKSAIYFERHKRSKGRAALFRQLRASPAKQTRDVPQQMFGNGYITQGLPPSGQLLLKGFTSYNPR*
Ga0068855_10166654813300005563Corn RhizosphereMKLSVAQSSAIYFKRHKRSRGRAALFRQLGASTTQRLGIKQRAFGHGFISPGLQSGQLSLRGFGSN
Ga0066702_1021541023300005575SoilMESTVTQRSAIYFKRHKGSKGRAALFWQLRASPANQTRDVKQQTFGNKYITEDLPSGQLSLRGFAS*
Ga0066702_1024124423300005575SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPANQIRDVKQQTFGKAYITQGLPSGQLSLEGSHLRTRGDA
Ga0066708_1046889513300005576SoilMESIATQRSAIYFKRHKRSKGRAALFRQLRASPAKQTRDVQQQMFGNGYITQGLP
Ga0070715_1106872623300006163Corn, Switchgrass And Miscanthus RhizosphereMESTVMQRSAIYFKRHKGSKGRAALFRRLRAPRANRDVKQQTFGNAYVTQDLPSGQLSLKGRIL
Ga0070716_10105092113300006173Corn, Switchgrass And Miscanthus RhizosphereMQPTVQQRSAIYFKQHKGSKHRAALFRQLRASATNQTCDVKQQTFGNTHVGQRLRSGQLWLRGFEFEYAP
Ga0070712_10072271913300006175Corn, Switchgrass And Miscanthus RhizosphereMESTVAQMSAIYFKQHKGSEGRAALFRQLRASPPNQRRDPKQQLFGCADIGQELPSGQRLLRGFAT*
Ga0079222_1146847723300006755Agricultural SoilMESLATQRSAIYFKRHKRSKGRAALFRQLPASPANQTPDVQQQMFGNEYTTQDIPLGQLLLKGFAS*
Ga0066665_1030267423300006796SoilMEPTVQQSSAIYFKRYKGSKSRGALFRQLRASLANQIHDVKQQTLGNAHIAQGLRSGQLWLRGLEV*
Ga0079220_1022112923300006806Agricultural SoilMEPMAFERSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNGYIPQGVPSGQLLLKGFAP*
Ga0075425_10225978223300006854Populus RhizosphereMPNIENEMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQRMFGNGYIPQGLPSGQLLLKGFAS*
Ga0075434_10096306423300006871Populus RhizosphereMITAQWNVVIQNMEANVQQSSAICFKRHKGSKSRAALFRQLRASPANQTHDVKQQTFGNAHIAQGLRSGQLWLRGLEV*
Ga0104326_10442223300007740SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPPNQSRDPKQQIFGNADIGQELPSGQRLLRGFAS*
Ga0105247_1056991113300009101Switchgrass RhizosphereMQPTVQQSSAIYFKRHKGSKHRAALFRQLRASAANQTCDVKQQTFGNAHVGQRLGSGQLWLRGFEFEYAPGDPTRKRG*
Ga0066709_10143786233300009137Grasslands SoilMKPTVKQSSAIYFKRHKGSKSQTALFRQLRASLASQTHDVKQQMVGNAHVAQGLRSGQLWLRGLEV*
Ga0105241_1237258813300009174Corn RhizosphereMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNGYILQGLPSGQLLLKGFAS*
Ga0134070_1015476313300010301Grasslands SoilMQPTAKQSSAIYFKRHKASKCRAALFRQLRASPPNQTRDIKQQTCGNGYIAQGLRS
Ga0134109_1041346313300010320Grasslands SoilMEPIVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTDDVKQQTFGNAHIAQGLRSGQLWLRGLEL
Ga0134067_1014224613300010321Grasslands SoilMEPIVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTDDVKQQTFGNSHIAQGLRS
Ga0134066_1004491923300010364Grasslands SoilMQPTAKQSSAIYFKRHKGSKCRAALFRQILTSPANQTRDVKQQMFGNGYIAQELRTGQLPLGFAV*
Ga0134125_1069045023300010371Terrestrial SoilMQPTVQQSSAIYFKRHKGSKHRVALFRQLRASAANQTCDVKQQTFGNAHVGERLRSGQLWLRGFEFEYAPGDPTRKRG*
Ga0134124_1100002113300010397Terrestrial SoilMQPTVQQSSAIYFKRHKGSKHRVALFRQLRASAANQTCDVKQQTFGNAHVGERLRSGQLWLRGFEFEYAPG
Ga0134122_1202978613300010400Terrestrial SoilMQPTVQQSSAIYFKRHKGSKHRVALFRQLRASAANQTCDVKQQTFGNAHVGQRLRSGQLWLRGFEFEYAPGDPTLKRG*
Ga0134121_1088117223300010401Terrestrial SoilMESTVAQMSAIYFKQHKGSKGRAALFRQLRASPPNQRRNPKQQLFGYADIGQELPSGQRLLRGFAT*
Ga0138514_10010095213300011003SoilMESTVAQKSAIYFKRHKGSKGRAALFRQLRASPPNQRRDPKQQLFGYADIGQELPSGQRLLRGFAT*
Ga0137382_1022371213300012200Vadose Zone SoilMESIATQRSAIYFKRHKRSKGRAALFRQLRASLANQTRDVQQQMFGNGYIPQGLPSGQLLLKGFAS*
Ga0137365_1098826323300012201Vadose Zone SoilKRHKGSKGRAALFRQLRASPANQIRDLKQQTFGKAYITQGFPSGQLSLRGFAS*
Ga0137363_1076394923300012202Vadose Zone SoilMESIATQRSAIYFKRHKRSKGRAALFRQLRASFANQTRDVQQQMFGNGYIPQGLPSGQLLLKGFAS*
Ga0137374_1008587143300012204Vadose Zone SoilMKPTVKQSSAIYFKRHKGSKSRTALFRQLRASLASQTHDVKQQMVGNAHVAQGLRSAQLWLRGLEV*
Ga0137362_1149929323300012205Vadose Zone SoilTVTQRSAIYFKRHKGSKGRAALFRQLRTSHANQIRDVKQQTFGNAYVTQDLPSGQLSLKGFAS*
Ga0137376_1141676013300012208Vadose Zone SoilMQPKAKQSSAIYFKRHKRSKCRAALFRQLRALPANQTRDFKQQTYGNGYTAQGLRSGQLP
Ga0137379_1115307313300012209Vadose Zone SoilNEMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPANQIRDLKQQTFGKAYITQGLPSGQLSLRGFAS*
Ga0137378_1084482713300012210Vadose Zone SoilPNMKPTAKQSSAIYFKRHKGSKCRAALFRQLRASPANQTRDIKQTFGNTYIAQGLQSGQLPLRGLEV*
Ga0137378_1124248023300012210Vadose Zone SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPANQIRDLKQQTFGKAYITQGFPS
Ga0137370_1020514713300012285Vadose Zone SoilMQPTAKQSSAIYFKRHKGSKCRAALFRQLRTSPANQTRDVKQQMFGNGYIAQEL
Ga0137367_1061477013300012353Vadose Zone SoilMQPTAKQSSAIYFKRHKASKCRAALFRQLRASPASQTRDVKQQTFSNGFIAQGLRSGHLSLR
Ga0137369_1001971743300012355Vadose Zone SoilMKASQPNMKPTVQQSSAIYFNRHKGSKYRAALFRQLRALPANQTRDVKQQTFGSGYIAQGLQSGQLVLRGFAS*
Ga0137371_1098449013300012356Vadose Zone SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPANQIRDLKQQTFGKAYITQG
Ga0137361_1057801923300012362Vadose Zone SoilMKPTVQQSSAIYFKRYKGSKSRAALFRQLRASLANQIRDVKQQTFGNAYIAQGLRSGQLWLRGLEF*
Ga0137361_1129525513300012362Vadose Zone SoilMQPTAKQSSAIYFKRHKDSKCRAVLFRQLRASPANQTCDVKQQTFGNGYIAQGLRSGQLP
Ga0137373_1106426713300012532Vadose Zone SoilMEPTVQQSSAIYFKRYKGSKSRGALFRQLRASLANQTHDVKQQTFGNAHIAQGLRSGQP
Ga0137397_1015239323300012685Vadose Zone SoilMESTVTQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLSSGQLSLKGFAS*
Ga0137395_1006460543300012917Vadose Zone SoilMKLTVKQSSAIYFKRYKGSKSRAALFRQLRASLANQIRDVKQQTFGNAYIAQGLRSGQLWLRGLEF*
Ga0137359_1130711713300012923Vadose Zone SoilPVTKMQPTAKQSSAIYFKRHKRSKCRAALFRQLRASPANQTRHVKQQTFGNGYIAQGLQAGQLPLREFAF*
Ga0137413_1115710613300012924Vadose Zone SoilMESTVMQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLPSGQLSLK
Ga0137407_1017855313300012930Vadose Zone SoilMKPTVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTHDVKQQTFGNARIAQGLRS
Ga0137407_1052468113300012930Vadose Zone SoilMQPTAKQSSAIYFKRHKRSKCRAALFRQLRASPPNQTRDIKQQTFGDGYIAQGLRSGQLPLRG
Ga0164298_1134632823300012955SoilIYFKRHKRSKGRAALFRQLRDSPANQTRDVQQQMFGNGYITQGLPSGQLLLKGFAS*
Ga0164303_1039755623300012957SoilMESIAAQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNGYITQGLPSGQLLLKGFAS*
Ga0164308_1140404113300012985SoilMESTVAQRSAIYFKRHKGSKGRAALFWRIRAPRASCHVKQQTFGNAYVTQDLPPGQLSLKGFAS
Ga0164304_1087732813300012986SoilMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQMFGNGYIPQGLPSGQLLLKGFAS*
Ga0157307_102799823300013096SoilMESTVMQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLPSGQLSL
Ga0157378_1111746523300013297Miscanthus RhizosphereMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNRYIPQGLPSGQLLLKGFAS*
Ga0134079_1028198213300014166Grasslands SoilMEPIVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTDDVKQQTFGNAHIAQGLRSGQLW
Ga0157377_1106948113300014745Miscanthus RhizosphereMESTLAQRSAIHFKRHKGSKGRAALFRQLRASPPNQRRNPKQQLVGYGDIGQELPSGQRLLRGFA
Ga0137403_1037807233300015264Vadose Zone SoilMQPTAKQSSAIYFKRHKRSKCRAALFRQLRASPANQTRHVKQQTFGNGYIAQGLQAGQLP
Ga0132258_1192119333300015371Arabidopsis RhizosphereFKRHKGSKSRAALFRQLRASPPNQSCGPKQQNMFGYADIGQELPSGQRLLKGFAT*
Ga0132257_10257514913300015373Arabidopsis RhizosphereEMESTVTARSAIYFKRHKDSKGRAALFRQLRASPPNKTRDVNQQTFGEAYLTQGLPSGQLSLKGFAS*
Ga0134083_1008146833300017659Grasslands SoilMQPTAKQSSAIYFKRHKSSKSRTALFRQLRASLASQTHDVKQQMVGNAHVAQGLRSGQLW
Ga0184605_1031035113300018027Groundwater SedimentMESTVTQKSAIYFKRHKNSKRRAALLRQLRPSPPNQSRDPKQQMFGYADIGQEFPSGQRLLRGFAT
Ga0184608_1013748013300018028Groundwater SedimentMRVSQPDMKPTFQQSSALYFKRHKGSKCRAALFRQLRVSPANETRDVKQQTFGNGYIAQGLRSGQL
Ga0184620_1017383823300018051Groundwater SedimentMESIATQRSAIYFKRHKRSKGRAALFRQLRASLANQTRDVQQQMFGNGYILQGLPSGQLLLKGFAS
Ga0184619_1004015523300018061Groundwater SedimentMELTVTQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLPSGQLSLKGFAS
Ga0184619_1028406113300018061Groundwater SedimentMESTVTQKSAIYFKRHKGSKGRAALFRQLRASPPNQSRDPKQQMFGYAEIGQELPSGQRLLRGFAT
Ga0184619_1053697513300018061Groundwater SedimentMESIVTQRSAIYFKRHKGSRGRAALFRQLRASPPNQSSDLKQQMFGNNKTGQELPSGQQ
Ga0184618_1030216923300018071Groundwater SedimentMQPTAKQSSAIYFNRHKRSKRRAALFRQLRASPAANQSRDVKQQAFGNGYIAQGLQSVQLPLRGFAFLCAR
Ga0066662_1145376113300018468Grasslands SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPANQIRDVKQQTFGKAYITQGLPSGQLS
Ga0173482_1045220423300019361SoilMIAAQWNVVIQNMEANVQQSSAIYFKRHKGSKSRAALFRQLRASPANQSHDVRQQTFGNACIAQGLRSGQLWLKGLK
Ga0193722_106528123300019877SoilMESIATQRSAIYFKRHKRSKGRAALFRQLRASLANQTRDVQQQMFGNGYIPQGLPSGQLLLKGFAS
Ga0193723_106266623300019879SoilMKPTVQQSSAIYFKRYKGSKSRAALFRQLRASLANQIHDVKQQTFGNAYIAQGLRSGQLWLRGLEF
Ga0193707_103568723300019881SoilMQPTAKQSSAIYFNRHKRSKRRAALFRQLRASPAANQSRDVKQQTFGNGYIAQGLQSVQLPLRGFAFLCGL
Ga0193729_125941013300019887SoilMESTVTQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNAYVTQDLPSGQLSLKGF
Ga0193751_110009123300019888SoilMKPTVQQSSAIYFKRYKGSKSRAALFRQLRASLANQIRDVKQQTFGNAYIAQGLRS
Ga0193731_101825113300020001SoilMQPTVQQSSAIYFKRHKGSKHRAALFRQLRASATNQTSNVKQQTFGNAHVGQRLRSGQLWLRGFEFEYAPGD
Ga0193730_101361933300020002SoilMQPTAKQSSAIYFNRHKRSKLRAALFRQLRASPAANQSRDVKQQTFGNGYIAQGLQSVQLPLRGFAFLCGL
Ga0210403_1042349623300020580SoilAVGCWLNTQANEMESTVAQRSAIYFKRHKGSKGRAALFRQLRASPPNQRRDPKQQLFGYADIGQELPSGQRLLRGFAT
Ga0210381_1038908913300021078Groundwater SedimentMQPTAKQSSAIYFKRHKGSKCRAALFRQLRASPANQTRDVKQQTLGNGDIAQGLQSEQLPLSGFAF
Ga0210382_1050073513300021080Groundwater SedimentMESTVTEKSAIYFKRHKSSKGRAALFRQLRTSPPNQSRDPKQQMFGAADIGQELPSGQRLLRGFAT
Ga0210404_1020777923300021088SoilMESTVAQRSAIYFKRHKGSKGRAALFRQLRASPPNQSRDHKQQMFGYADIGQELPSGQRLLRGFAT
Ga0193719_1009387823300021344SoilMEPTVKQSSAIYFKRYKGSKSRAALFRQLRASLANQIHDVKQQTFGNAYIAQGLRSGQLWLRGLEF
Ga0193709_100345413300021411SoilMESIVTQRSAIYFKRHKGSKDRAALFRQLRASPANQTPDVKQQTFGNAYVTQG
Ga0182009_1008583423300021445SoilMESLATQRSAIYFKRHKRSKGRAALFRQLRASPANQTPDVQQQMFGNEYTTQDLPLGQLLLKGFASQNSR
Ga0222625_102547623300022195Groundwater SedimentMQPTAKQSSAIYFNRHKRSKRRAALFRQLRASPAVNQSRDVKQQTFGNGYIAQGLQSVQLPLRGFAFLCGL
Ga0224452_128316813300022534Groundwater SedimentMESTVTQRGAIYFKRHKGSKGRAALFRQLRASPANQTRDVKQQTFGNAYVTQGL
Ga0222623_1000714023300022694Groundwater SedimentMKITAKQSSAIYFKRHKVSKCRAALFRQLRASPANQTRDVKQQTFGNGYIAQGLQSGQLLLRGFATQYARGDATRG
Ga0207697_1031354723300025315Corn, Switchgrass And Miscanthus RhizosphereMESIATQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNRYIPQGLPSGQLLLEGFAS
Ga0207697_1051803923300025315Corn, Switchgrass And Miscanthus RhizosphereEMESTVAQRSAIYFKRHKGSKGRAALFRQLRASPPSQRRDPKQQLFGYADVGQELPSGQRLLRGFAT
Ga0207684_1107107313300025910Corn, Switchgrass And Miscanthus RhizosphereMKPTVQQSSAIYFKRHKGSKCRAALFRQLRASPANQTRDVRQQTFGNGYIAQGLQS
Ga0207646_1127367113300025922Corn, Switchgrass And Miscanthus RhizosphereMQPTAKQSSAIYFKRHKGSKCRAALFRQLRASPANQTRDVKQQTFGNGYIEQGLRSGQLPLRGV
Ga0207700_1161404413300025928Corn, Switchgrass And Miscanthus RhizosphereMQPIAKQSSAIYFKRHKGSKCRAALFRQLRASPANQTRDVKQQTFGNGYIEQGLRSGQLPLRGVPV
Ga0207691_1060256423300025940Miscanthus RhizosphereMESIATQKSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNRYIPQGLPSGQLLLEGFAS
Ga0209350_112080313300026277Grasslands SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRASPANQIRDVKQQTFGKAYITQG
Ga0209234_101124143300026295Grasslands SoilMQPTAKQNSAIYFKRHKRSECRAALFRQLRASPANQTRDIQQQGLGHGYIAQGLQAGQLSLRGFAS
Ga0209688_110285713300026305SoilMESIVTQRSAIFFKRHKGSKGRAALFRQLRASPANLIRDLKQQTFGKAYITQGLPSGQLS
Ga0209265_114229913300026308SoilYFKRHKRSKGRAALFRQLRASPAKQTRDGQQQMFGNGHITQGLPSGQLLLKGFAS
Ga0209153_114647023300026312SoilMESTVTQRSAIYFKRHKGSKGRAALFWQLRASPANQTRDVKQQTFGNKYITEDLPSGQLSLRGFAS
Ga0209154_105435213300026317SoilMEPIVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTHDVKQQTFGNAHIAQGLRSGQLWLRGLEV
Ga0209470_124649813300026324SoilMEPIVQQSSAIYFKRHKGSKSRAALFRQLRASLANQTHDVKQQTFRNAHIAQGLR
Ga0209473_115720713300026330SoilMQPTAKQSSAIYFKRHKGSKCRAALFRQIRTSPANQTRDVKQQMFGNGYIAQELRTGQLPLGFAV
Ga0209267_104971113300026331SoilMESTVMQRSAVYFKRHKGSKGRAALFRQLRALRANQTRDVKQQTFGNAYLTQGLPSGQLSLKGFAS
Ga0209808_113898713300026523SoilMESIATQRSAIYFKRHKRSKGRAALFRQLRASPAKQTRDVQQQMFGNGYITQGLPS
Ga0209690_105721423300026524SoilMKPTVKQSSAIYFKRHKGSKSQTALFRQLRASLASQTHDVKQQMVGNAHVAQGLRSGQLWLRGLEV
Ga0209160_125203213300026532SoilMQRSAVYFKRHKGSKGRAALFRQLRALRANQTRDVKQQTFGNAYLTQGLP
Ga0209056_1006811943300026538SoilMQPTAKQNSAIYFKRHKRSECRAALFRQLRASPANQTRDIQQQGLGHGYIAQGLQAGQLSLRGFAF
Ga0209805_100116513300026542SoilTQRSAIYFKRHKGSKGRAALFRQLRASPANQIRDVKQQTFGKAYITQGLPSGQLSLRGFA
Ga0209577_1008547413300026552SoilMESTVTQRSAIYFKRHKGSKGRAALFWQLRASPANQTRDVKQQTFGNKYITEDLPSGQLSLRGIAS
Ga0209577_1012101443300026552SoilMESTVTQRSAIYFKRHKGSKGRAALFRQLRALRANQTRDVKQQTFGNAYVTQGLPSGQLSLKGFAS
Ga0179587_1057698423300026557Vadose Zone SoilMQPTAKQSSAIYFKRHKRSKCRAALFRQLRASPANQIRDVKQQTLGNAYIAQGLQSGQLPLSGF
Ga0207625_10603723300027457SoilMQRSAIYFKRHKGSKGRAALFRQLRASPANQTRDVQQQMFGNGYILQGLPSGQLLLKGFA
Ga0207601_10951313300027461SoilMESTVMQRSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNGYIPQGLPSGQLLLKGFAS
Ga0209968_108137133300027526Arabidopsis Thaliana RhizosphereMQPTVQQSSAIYFKRHKGSKSRAALFRQLRASPANQTHDVKQPTFGNAHIGQGLR
Ga0209422_108168213300027629Forest SoilMKPTVQQSSAIYFKRYKGSKSRAALFRQLRASLANQIRDVKQQTFGNAYIAQGLRSGQLWLRGLEF
Ga0209177_1004312423300027775Agricultural SoilMEPMAFERSAIYFKRHKRSKGRAALFRQLRASPANQTRDVQQQMFGNGYIPQGVPSGQLLLKGFAP
Ga0268264_1260188813300028381Switchgrass RhizosphereMQPTVQQSSAIYFKRHKGSKHRVALFRQLRASAANQTCDVKQQTFGNAHVGERLRSGQLWLRGFEFEYAPGDPTRK
Ga0307293_1005821813300028711SoilMESTAQQSTAIYFKRHKGSKRRAALFRQLCTSPANQTPDVKQQTFGNACIRKGFD
Ga0307288_1028844513300028778SoilMELTVTQRSAIYFKRHKGSKGRAALFRRLRASRANRDVKQQTFGNTYVTQDLPS
Ga0307282_1028142523300028784SoilMQPTAKQSSAIYFNRHKRSKLRAALFRQLRASPAANQSRDVKQQTFGNGYIAQGLQSVQ
Ga0307302_1066014513300028814SoilMQPTAKQSSAIYFKRHKRSKCRAALFRQLRASPANQTRHVKQQTFGNGYIARGLQAGQLPLR
Ga0307312_1015382223300028828SoilMQPTAKQSSAIYFKRHKGSKGRAALFRQLRASPANQTRDVKQQTFGNGFIAQGL
Ga0307278_1002461323300028878SoilMQPTVQQSSAIYFKRHKGSKRRAALFRQLRASVANQTCDVEQQMFGNAHIGQRLPSGQLWLSGFEF
Ga0307277_1020723513300028881SoilMKASQPNMKPTVQQSSAIYFNRHKDSKCRAALFRQLRASPANQTRDVKQQTFGNTYIAQGLRSGQLLLSGLEVWYAHRDATRG
Ga0307469_1137370813300031720Hardwood Forest SoilMETIATQRSAIYFKRHKRSKGRAALLRQLRASPANQTRDVQQQTFGNGCITQGLPSGQLSLKGFTP
Ga0307475_1108224113300031754Hardwood Forest SoilGDSTLAQSGVIYFKRYKRSKCRAALFRQLRTSSTNQARDVKQQTFGAGYLSQGLSSRQLSLKGFAL
Ga0310811_1082462623300033475SoilMEDGDSKLAQSSAIYFKRHKRSKYRTALFQQLRASSTNQTRDVKREKFGTEYISQNLRSGQLSLRGFGF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.