Metagenome / Metatranscriptome Family F040130

Basic Information
Family ID	F040130
Family Type	Metagenome / Metatranscriptome
Number of Sequences	162
Average Sequence Length	52 residues
Representative Sequence	MPGSVKRAVAIVAGVVLGMLIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV
Number of Associated Samples	126
Number of Associated Scaffolds	162

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.29 %
% of genes near scaffold ends (potentially truncated)	16.67 %
% of genes from short scaffolds (< 2000 bps)	76.54 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (92.593 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (10.494 % of family members)
Environment Ontology (ENVO)	Unclassified (35.185 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.704 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1E4B_03617940 2JGI24735J21928_102381891 3JGI25156J39149_100036019 4JGI25156J39149_10119921 5JGI25156J39149_10166822 6JGI25154J39366_10202432 7JGI25164J39214_10207412 8rootH1_100941961 9Ga0055539_10003172 10Ga0055539_10124472 11Ga0055535_10211051 12Ga0055542_10386361 13Ga0066679_105679101 14Ga0070658_101445182 15Ga0070658_104676482 16Ga0070658_106245452 17Ga0070658_106863932 18Ga0070690_1004006302 19Ga0068868_1005869712 20Ga0070674_1020561632 21Ga0070673_1001001192 22Ga0070659_1008005572 23Ga0070659_1014002631 24Ga0070663_1005431131 25Ga0070678_1017769782 26Ga0070662_1003220832 27Ga0068867_1004055242 28Ga0068867_1011593662 29Ga0070685_101565202 30Ga0077120_11035252 31Ga0077120_11700142 32Ga0077119_100304005 33Ga0077119_100793112 34Ga0077119_102438422 35Ga0077119_102488061 36Ga0077119_102957002 37Ga0070679_1010458352 38Ga0068853_1004389292 39Ga0068855_1002197132 40Ga0068855_1004456102 41Ga0068855_1024459992 42Ga0070664_1013612052 43Ga0068857_1013863411 44Ga0068852_1024995081 45Ga0075040_18835562 46Ga0075038_113710772 47Ga0068863_1015072502 48Ga0075370_100050193 49Ga0105240_104922102 50Ga0105245_109837232 51Ga0105243_114708482 52Ga0116229_102836342 53Ga0116229_110558432 54Ga0105855_12489982 55Ga0105855_12732962 56Ga0105854_10147712 57Ga0105856_12388942 58Ga0123338_103470892 59Ga0116227_100893572 60Ga0116227_102808732 61Ga0116226_100649463 62Ga0126318_102942581 63Ga0105239_100902364 64Ga0105239_102528622 65Ga0126361_112159571 66Ga0126356_104047442 67Ga0105246_105680302 68Ga0163162_125096032 69Ga0181534_100833902 70Ga0182008_101886802 71Ga0157376_120096642 72Ga0182007_101536232 73Ga0194135_104650681 74Ga0210408_106834762 75Ga0210397_102552102 76Ga0210389_108479281 77Ga0210384_100010446 78Ga0210392_103237362 79Ga0210402_114292822 80Ga0212090_101857802 81Ga0247782_10105352 82Ga0247779_10031383 83Ga0209674_100007831 84Ga0209672_1121122 85Ga0209563_1183852 86Ga0207427_1014249 87Ga0209258_10047512 88Ga0209646_1000053103 89Ga0209677_1085652 90Ga0209759_10031242 91Ga0209759_10359482 92Ga0207705_100497362 93Ga0207705_106547832 94Ga0207705_114833452 95Ga0207695_100211494 96Ga0207695_105690032 97Ga0207671_104973032 98Ga0207649_113800432 99Ga0207650_118335062 100Ga0207687_104680602 101Ga0207690_102327472 102Ga0207690_103566131 103Ga0207706_117411871 104Ga0207709_106071311 105Ga0207667_100166142 106Ga0207667_105810452 107Ga0207667_108184682 108Ga0207651_100120354 109Ga0207712_116549641 110Ga0207677_113822211 111Ga0207678_101392242 112Ga0207674_106672201 113Ga0207674_107727602 114Ga0207674_112422232 115Ga0209523_10587722 116Ga0268264_119007902 117Ga0302151_100001515 118Ga0302151_100715432 119Ga0265336_10000012122 120Ga0302264_10667281 121Ga0302202_102797602 122Ga0302260_11144092 123Ga0302279_1000040629 124Ga0302157_101261172 125Ga0302291_103126581 126Ga0247043_10359182 127Ga0247044_10520952 128Ga0302142_11803682 129Ga0311342_100944954 130Ga0311336_109709631 131Ga0311348_104719312 132Ga0311333_101046072 133Ga0311333_103442241 134Ga0302193_101658252 135Ga0311372_10000316116 136Ga0311372_1000938011 137Ga0311372_101871102 138Ga0311372_130424212 139Ga0307511_100905502 140Ga0302309_101011162 141Ga0311345_107818681 142Ga0302311_109807702 143Ga0311366_106687891 144Ga0302323_1020585882 145Ga0318516_100377281 146Ga0307508_108806732 147Ga0310813_100189923 148Ga0318500_100042493 149Ga0302321_1036490402 150Ga0307516_1000976910 151Ga0307516_103943462 152Ga0318512_103945032 153Ga0308174_112340162 154Ga0308174_116033842 155Ga0308176_126700382 156Ga0318549_100179323 157Ga0308173_100108263 158Ga0308173_109644332 159Ga0335083_101373782 160Ga0370494_191095_340_501 161Ga0370487_0161714_228_395 162Ga0373959_0065649_195_356
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1E4B_03617940 2JGI25156J39149_100036019 3JGI25156J39149_10119921 4JGI25156J39149_10166822 5Ga0055539_10124472 6Ga0077119_102488061 7Ga0070679_1010458352 8Ga0116229_102836342 9Ga0105855_12732962 10Ga0105854_10147712 11Ga0116227_102808732 12Ga0181534_100833902 13Ga0194135_104650681 14Ga0210389_108479281 15Ga0207674_106672201 16Ga0302264_10667281 17Ga0302260_11144092 18Ga0302279_1000040629 19Ga0311342_100944954 20Ga0302323_1020585882 21Ga0308174_112340162 22Ga0318549_100179323 23Ga0308173_109644332
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. 1Ga0068867_1011593662 2E4B_03617940 3rootH1_100941961 4Ga0055539_10124472 5Ga0066679_105679101 6Ga0070658_104676482 7Ga0070673_1001001192 8Ga0070685_101565202 9Ga0075038_113710772 10Ga0075370_100050193 11Ga0116229_110558432 12Ga0105855_12732962 13Ga0105854_10147712 14Ga0105856_12388942 15Ga0116227_102808732 16Ga0126356_104047442 17Ga0163162_125096032 18Ga0181534_100833902 19Ga0182007_101536232 20Ga0194135_104650681 21Ga0210397_102552102 22Ga0210389_108479281 23Ga0210384_100010446 24Ga0212090_101857802 25Ga0247782_10105352 26Ga0247779_10031383 27Ga0209672_1121122 28Ga0209563_1183852 29Ga0207427_1014249 30Ga0209759_10359482 31Ga0207690_102327472 32Ga0207667_108184682 33Ga0302151_100001515 34Ga0302151_100715432 35Ga0265336_10000012122 36Ga0302202_102797602 37Ga0302260_11144092 38Ga0302279_1000040629 39Ga0302157_101261172 40Ga0302291_103126581 41Ga0247043_10359182 42Ga0311336_109709631 43Ga0302323_1020585882 44Ga0318516_100377281 45Ga0310813_100189923 46Ga0307516_1000976910 47Ga0307516_103943462 48Ga0308174_112340162 49Ga0308174_116033842 50Ga0308176_126700382 51Ga0308173_109644332 52Ga0335083_101373782 53Ga0370494_191095_340_501 54Ga0370487_0161714_228_395
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 34.57% β-sheet: 0.00% Coil/Unstructured: 65.43%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Pfam ID	Name	% Frequency in 162 Family Scaffolds
PF00108	Thiolase_N	37.65
PF00725	3HCDH	31.48
PF02737	3HCDH_N	11.11
PF02803	Thiolase_C	5.56
PF06832	BiPBP_C	3.09
PF00106	adh_short	1.23
PF13561	adh_short_C2	1.23
PF12418	AcylCoA_DH_N	1.23
PF00313	CSD	0.62
PF00756	Esterase	0.62

COG ID	Name	Functional Category	% Frequency in 162 Family Scaffolds
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	43.21
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	42.59
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	11.11
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	11.11
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	11.11
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	11.11
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	11.11
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	11.11
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	3.09
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.62

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.59 %
Unclassified	root	N/A	7.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.59 %
Unclassified	root	N/A	7.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.59 %
Unclassified	root	N/A	7.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.67 %
Unclassified	root	N/A	7.41 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	56.79 %
Unclassified	root	N/A	7.41 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	46.91 %
Unclassified	root	N/A	7.41 %

Name	Rank	Taxonomy	Distribution
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	3.09 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	9.88 %
Unclassified	root	N/A	7.41 %

Name	Rank	Taxonomy	Distribution
Aquincola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquincola	2.47 %
Caldimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas	3.09 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.62 %
Unclassified	root	N/A	7.41 %

Name	Rank	Taxonomy	Distribution
Aquincola tertiaricarbonis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquincola → Aquincola tertiaricarbonis	2.47 %
Caldimonas manganoxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas manganoxidans	2.47 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.62 %
Unclassified	root	N/A	7.41 %

Scaffold	Taxonomy	Length	IMG/M Link
2170459004\|F62QY1Z01BVU8W	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300002067\|JGI24735J21928_10238189	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300002705\|JGI25156J39149_1000360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	29472	Open in IMG/M
3300002705\|JGI25156J39149_1011992	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300002705\|JGI25156J39149_1016682	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300002738\|JGI25154J39366_1020243	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300002772\|JGI25164J39214_1020741	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300003323\|rootH1_10094196	All Organisms → cellular organisms → Bacteria → Proteobacteria	1034	Open in IMG/M
3300003752\|Ga0055539_1000317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	25090	Open in IMG/M
3300003752\|Ga0055539_1012447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas manganoxidans	1045	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	41.36%
Host-Associated	Host-Associated	58.64%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.32%
Plants	Host-Associated → Plants	58.64%
Terrestrial	Environmental → Terrestrial	37.04%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	4.32%
Peat	Environmental → Terrestrial → Peat	15.43%
Peat Moss	Host-Associated → Plants → Peat Moss	3.09%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.23%
Rhizome	Host-Associated → Plants → Rhizome	0.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.46%
Roots	Host-Associated → Plants → Roots	16.05%
Soil	Environmental → Terrestrial → Soil	20.37%

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.62%
Endophytes	Host-Associated → Plants → Roots → Endophytes	5.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.81%
Epiphytes	Host-Associated → Plants → Roots → Epiphytes	7.41%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.62%
Ice	Environmental → Aquatic → Freshwater → Ice	2.47%
Loam	Environmental → Terrestrial → Soil → Loam	2.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.20%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	12.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.09%
Unclassified	Host-Associated → Plants → Roots → Unclassified	2.47%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.23%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.56%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.62%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.62%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	1.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.23%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Roots → Epiphytes → Unclassified	7.41%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.09%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	2.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.23%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.23%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.62%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.47%
Arabidopsis Root	Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root	7.41%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	5.56%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.62%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.23%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	10.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	8.02%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.70%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.62%
Cryconite	Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite	1.23%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	2.47%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	6.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.62%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	1.23%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.62%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.62%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.70%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	3.70%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.23%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.62%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.09%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.62%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.23%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.62%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459004	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2)	Environmental	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300002705	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS	Host-Associated	Open in IMG/M
3300002738	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA	Host-Associated	Open in IMG/M
3300002772	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS	Host-Associated	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300003752	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2	Host-Associated	Open in IMG/M
3300003761	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2	Host-Associated	Open in IMG/M
3300003762	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2	Host-Associated	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M

Showing 1 to 10 of 126 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4B_03617940	2170459004	Grass Soil	VKGFLTRALAILAGVMLGMLIVSGSGPWRELFDRKPDPVPSAPIQRERAPDTRV
JGI24735J21928_102381891	3300002067	Corn Rhizosphere	MQRFLTRTLAILAGIVLGMLIVAGSGPWRELLRKSDSPASAPIQRERAPDTRV*
JGI25156J39149_100036019	3300002705	Arabidopsis Root	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV*
JGI25156J39149_10119921	3300002705	Arabidopsis Root	MPRFLTRTLAILAGILLGMLVVAGSGPWRELLRKSDSPASAPIQRERAPDTRV*
JGI25156J39149_10166822	3300002705	Arabidopsis Root	MSRAPGFLVRTAAVLLGVVLGMAVVAGSSPWRELLKKPEPVPSAPIQRERAPDQRV*
JGI25154J39366_10202432	3300002738	Arabidopsis Root	VAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV*
JGI25164J39214_10207412	3300002772	Arabidopsis Rhizosphere	GSFKRAVAVVAGVVLGMAIAAGTGPWRELFKPSQPVQPAPIQRERAPDLRV*
rootH1_100941961	3300003323	Sugarcane Root And Bulk Soil	MPGSVKRAAAVVAGVVLGMAIAAGASPWRELFKRSEPVQPAPIQRERAPDTRV*
Ga0055539_10003172	3300003752	Arabidopsis Root	MPGPVKRAVAIMAGVVLGMVIAAGASPWRELFRKTEPVPPAPIQRERAPDTRV*
Ga0055539_10124472	3300003752	Arabidopsis Root	MRVAGLVKRSVAVLVGVMLGMLLVAGSGPWRELLKKADPPPEPAPIQRERAPDLRV*
Ga0055535_10211051	3300003761	Arabidopsis Root	MPGSVKRALAIVAGVVLGMAIAAGASPWRELFRRTEPVQPAPIQREPAPDTRV*
Ga0055542_10386361	3300003762	Arabidopsis Root	VLLGVVLGMAVVAGSSPWRELLKKPEPVPSAPIQRERAPDQRV*
Ga0066679_105679101	3300005176	Soil	MPGSVKRAAAILAGVVLGMAIAAGASPWRELLRKTEPARPAPMPRERAPDTRV*
Ga0070658_101445182	3300005327	Corn Rhizosphere	VKRFLTRTLAVLAGIVLGMLIVSGAGPWRELFRKSDTATPPPIQRERAPDTRV*
Ga0070658_104676482	3300005327	Corn Rhizosphere	MRVAGLFKRSVAVLVGVMLGMLLVAGSGSWRELRSKPEAPKPAPIQRERAPDLRA*
Ga0070658_106245452	3300005327	Corn Rhizosphere	MSRFLTRTLAILAGIVLGMLVVAGSGPWRELFRKADSPASAPIQRERAPDTRV*
Ga0070658_106863932	3300005327	Corn Rhizosphere	MPGSIKRAVAIVAGVLLGMAIAAGTSPWRELFRKTEPVQPAPIQRERAPDTRV*
Ga0070690_1004006302	3300005330	Switchgrass Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPAQPAPIQRERAPDTRA*
Ga0068868_1005869712	3300005338	Miscanthus Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPAQPAPIQRERAPDTRV*
Ga0070674_1020561632	3300005356	Miscanthus Rhizosphere	MPGSFKRAVAIVAGVVLGMLIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV*
Ga0070673_1001001192	3300005364	Switchgrass Rhizosphere	VKGFLTRTLAILAGIVLGMLIVAGAAPWRELFRKSDTAPPAPIQRERAPDTRV*
Ga0070659_1008005572	3300005366	Corn Rhizosphere	MRVAGLFKRSVAVLVGVMLGVLLVAGSGSWRELRSKPEAPKPAPIQRERAPDLRA*
Ga0070659_1014002631	3300005366	Corn Rhizosphere	VKRAMAIVAGIVLGMVIAAGASPWRELFRKTEPAQPAPIQRERAPDTRV*
Ga0070663_1005431131	3300005455	Corn Rhizosphere	PGSVKRAMAIVAGIVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV*
Ga0070678_1017769782	3300005456	Miscanthus Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV*
Ga0070662_1003220832	3300005457	Corn Rhizosphere	MQRFLTRTLAILAGIVLGMLVVAGSGPWRELFRKADSPASAPIQRERAPDTRV*
Ga0068867_1004055242	3300005459	Miscanthus Rhizosphere	MMPGPVKRAVAVLAGVVLGMVIAAGASPWRELLRKPEPAPSAPIQRERAPDTRV*
Ga0068867_1011593662	3300005459	Miscanthus Rhizosphere	MPGSVKRAVAIVAGVVLGMLIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV*
Ga0070685_101565202	3300005466	Switchgrass Rhizosphere	VAGSVKRALAIVAGIVLGMAIAAGASPWRELFRKTGPAQPAPIQRERAPDTRV*
Ga0077120_11035252	3300005513	Arabidopsis Rhizosphere	MAGSFKRAVAVVAGVVLGMAIAAGTGPWRELFKPSQPVQPAPIQRERAPDLRV*
Ga0077120_11700142	3300005513	Arabidopsis Rhizosphere	VKGFLTRTLAILAGIVLGMLVVAGSGPWRELFRKSDSPASAPIQRERAPDTRV*
Ga0077119_100304005	3300005519	Arabidopsis Root	MPGPVKRAVAILAGVVLGMAIAAGASPWRELLRKPEPVPSAPIQRERAPDTRV*
Ga0077119_100793112	3300005519	Arabidopsis Root	MGKAPGFLVRTAAVLLGVVLGMAVVAGASPWRELLRKPEPASSAPIQRERAPDLRV*
Ga0077119_102438422	3300005519	Arabidopsis Root	MRRFLTRTLAILAGIVLGMLIVAGSGPWRELFRKPEPVQPAPIPRERAPDTRV*
Ga0077119_102488061	3300005519	Arabidopsis Root	KRFLTRTLAVLAGIVLGMLLVSGAGPWGELFRKPDTATPPPIQREGAPDTRV*
Ga0077119_102957002	3300005519	Arabidopsis Root	MPASVKRAAAILAGVVLGMAIAAGASPWRELLRKTEPARPAPMPRERAPDTRV*
Ga0070679_1010458352	3300005530	Corn Rhizosphere	VKGLVTRTLAVIAGVVLGMLLVAGSGPWRELFKRPDPAPATPIQRERAPDQRV*
Ga0068853_1004389292	3300005539	Corn Rhizosphere	MPGSVKRAMAIVAGIVLGMVIAAGASPWRELFRKTEPAQPAPIQRERAPDTRV*
Ga0068855_1002197132	3300005563	Corn Rhizosphere	MKRFLTRTLAVLAGIVLGMLLVSGAGPWRELFRKPDTATPPPIQRERAPDTRV*
Ga0068855_1004456102	3300005563	Corn Rhizosphere	MPGSVKRAMAIVAGIVLGMVIAAGASPWRELFRKTAPVQPAPIQRERAPDTRA*
Ga0068855_1024459992	3300005563	Corn Rhizosphere	MPGSVKRAMAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV*
Ga0070664_1013612052	3300005564	Corn Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPVQPAPIQRERAPDTRV*
Ga0068857_1013863411	3300005577	Corn Rhizosphere	VAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV*
Ga0068852_1024995081	3300005616	Corn Rhizosphere	MPGSVKRAMAIVAGIVLGMVIAAGASPWRELFRKTEPVQPAPIQRERAPDARV*
Ga0075040_18835562	3300005646	Permafrost Soil	VKGFLTRTLAILAGIVLGMLIVSGSGPWRELFNRKPDATPSAPIQRERAPDTRV*
Ga0075038_113710772	3300005650	Permafrost Soil	MKGLFTRTLAVLAGIVLGMAIVAGASPWRQLFKKPDNTPAAPIQRERAPDQRV*
Ga0068863_1015072502	3300005841	Switchgrass Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPVQPAPIQRERAPDTRA*
Ga0075370_100050193	3300006353	Populus Endosphere	MPASVKRAAAILAGVALGMVIAAGASPWRELFRKTEPARPAPIQRERAPDTRV*
Ga0105240_104922102	3300009093	Corn Rhizosphere	MAGSFKRAVAVVAGVVLGMAIAAGTGPWRELFKPSQPVQPAPVQRERAPDLRV*
Ga0105245_109837232	3300009098	Miscanthus Rhizosphere	MPGSFKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPAQPAPIQRERAPDTRA*
Ga0105243_114708482	3300009148	Miscanthus Rhizosphere	MPGSVKRTVAIVAGVVLGMLIAAGASPWRELFRKTEPVQPAPIQRERAPDTRA*
Ga0116229_102836342	3300009500	Host-Associated	LGMLVVAGAQPWRELFRKPDTAPPAPIQRERAPDTRV*
Ga0116229_110558432	3300009500	Host-Associated	VKRLLTRTLAVVAGIVLGMLVVAGADPWRELFRKPDAAPSVPIQRERAPDTRA*
Ga0105855_12489982	3300009649	Permafrost Soil	VKGFLTRTLAILAGIVLGMLVVSGSGPWRELFKKSDTAAPAPIQRERAPDTRV*
Ga0105855_12732962	3300009649	Permafrost Soil	MAGFIKRAMAVLAGIVMGMLIVSGSGPWRELFKKPDNTPPAPIQRERAPDTRV*
Ga0105854_10147712	3300009660	Permafrost Soil	VKGSFKRAAAILAGVVLGIVIVAGASPWCELRKKPDNTPPAPIQRERAPDTRV*
Ga0105856_12388942	3300009662	Permafrost Soil	MAGFIKRAMAVLAGIVLGIVIVAGAGPWRERRPKPDATPQTPIQRERAPDTRV*
Ga0123338_103470892	3300009686	Glacier Valley	VKGVLTRTLAILAGIVLGMLIVSGSSPWRELFRKPEPVPSTPIQRERAPDQRV*
Ga0116227_100893572	3300009709	Host-Associated	VKRLLTRTLAVVAGIVLGMLVVAGAQPWRELFRKPDTAPPAPIQRERAPDTRV*
Ga0116227_102808732	3300009709	Host-Associated	MKAAGIVARTAAVLLGVVLGMALVAGASPWQQLLKKSEPVPATPIQREPAPDQRV*
Ga0116226_100649463	3300009787	Host-Associated	VKRLLTRTLAVVAGIVLGMLVVSGADPWRELFRKPDTAPPVPIQRERAPDTRA*
Ga0126318_102942581	3300010152	Soil	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELFKRGEPVQPAPIQRERAPDTRV*
Ga0105239_100902364	3300010375	Corn Rhizosphere	RSRQIPSQLLAMSRFLTRTLAILAGIVLGMLVVAGSGPWRELFRKADSPASAPIQRERAPDTRV*
Ga0105239_102528622	3300010375	Corn Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQRERAPDTRA*
Ga0126361_112159571	3300010876	Boreal Forest Soil	MKGFLTRMLAVLAGIVLGMLVVSGSGPWRELFKKPDNVPPAPIQRERAPDQRV*
Ga0126356_104047442	3300010877	Boreal Forest Soil	VKGFFTRTLAVLAGIVLGMLIVSGPGPWRELFKKPDLAAPAPIPRERAPDTRV*
Ga0105246_105680302	3300011119	Miscanthus Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPAQPAPIQRERAPVTRA*
Ga0163162_125096032	3300013306	Switchgrass Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPAQPAPIQRERSPYTRA*
Ga0181534_100833902	3300014168	Bog	MSKAPGFLARTVAVLLGVVLGMAVVAGASPWRELLRKPEPAPSAPIQRERAPDLRVQAPETFPESRSST*
Ga0182008_101886802	3300014497	Rhizosphere	MMPGSVKRAAAILAGVVLGMLIAAGASPWRELLRKTEPARPAPIQRERAPDTRV*
Ga0157376_120096642	3300014969	Miscanthus Rhizosphere	MAGSFKRAVAVVAGVVLGMAIAAGTGPWRELFKPSEPVQPAPIQRERAPDLRA*
Ga0182007_101536232	3300015262	Rhizosphere	MRRFLTRTLAILAGIVLGMLIVAGSGPWRELIRKPEPVQPAPIQRERAPDTRV*
Ga0194135_104650681	3300018414	Watersheds	AGIVLGIVIAAGASPWRELFKKPDDTPAAPIQRERAPDTRV
Ga0210408_106834762	3300021178	Soil	MSKAPGFLVRAAAVLLGVVLGMAVVAGTSPWRELLKKPEPATTAPIQRERAPDLRV
Ga0210397_102552102	3300021403	Soil	MKGFLTRTLAVLAGIVLGMLVVSGSGPWRELFKKPDTAPPAPIQRERAPDQRV
Ga0210389_108479281	3300021404	Soil	MAGEQAMSGFLKRALAILAGVVLVMLVVSGAAPWRELFRKPDAAPTPPVQREPAPDTRV
Ga0210384_100010446	3300021432	Soil	MSRAPGFLVRAAAVLLGVVLGMAVVAGTSPWRELLKKPEPATTAPIQRERAPDLRV
Ga0210392_103237362	3300021475	Soil	MKGFLTRTLAVLAGIVLGMLVVSGSAPWRELFKKPDTAPPAPIQRERAPDQRV
Ga0210402_114292822	3300021478	Soil	RTLAVLAGIVMGMLIVSGSGPWRELFKKPDTTPPAPIQRERAPDQRV
Ga0212090_101857802	3300022561	Glacier Valley	VKGVLTRTLAILAGIVLGMLIVSGSSPWRELFRKPEPVPSTPIQRERAPDQRV
Ga0247782_10105352	3300022870	Plant Litter	VKGLVTRTLAVIAGVVLGMLLVAGSGPWRELFKRPDPAPATPIQRERAPDQRV
Ga0247779_10031383	3300022908	Plant Litter	VKGFLKRAAAIVVGVVLGMVIVAGASPWRELFRKPDTAPAPPIQRERAPDTRV
Ga0209674_100007831	3300025226	Arabidopsis Root	MPGPVKRAVAIMAGVVLGMVIAAGASPWRELFRKTEPVPPAPIQRERAPDTRV
Ga0209672_1121122	3300025228	Arabidopsis Root	MSRAPGFLVRTAAVLLGVVLGMAVVAGSSPWRELLKKPEPVPSAPIQRERAPDQRV
Ga0209563_1183852	3300025230	Arabidopsis Root	VKGFLTRTLAILAGIVLGMLVVAGSGPWRELFRKSDSPASAPIQRERAPDTRV
Ga0207427_1014249	3300025231	Arabidopsis Rhizosphere	MAGSFKRAVAVVAGVVLGMAIAAGTGPWRELFKPSQPVQPAPIQRERAPDLRV
Ga0209258_10047512	3300025242	Arabidopsis Root	MPGSVKRALAIVAGVVLGMAIAAGASPWRELFRRTEPVQPAPIQREPAPDTRV
Ga0209646_1000053103	3300025246	Arabidopsis Root	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV
Ga0209677_1085652	3300025253	Arabidopsis Root	MRVAGLVKRSVAVLVGVMLGMLLVAGSGPWRELLKKADPPPEPAPIQRERAPDLRV
Ga0209759_10031242	3300025256	Arabidopsis Root	MPRFLTRTLAILAGILLGMLVVAGSGPWRELLRKSDSPASAPIQRERAPDTRV
Ga0209759_10359482	3300025256	Arabidopsis Root	MPGPVKRAVAILAGVVLGMAIAAGASPWRELLRKPEPVPSAPIQRERAPDTRV
Ga0207705_100497362	3300025909	Corn Rhizosphere	MSRFLTRTLAILAGIVLGMLVVAGSGPWRELFRKADSPASAPIQRERAPDTRV
Ga0207705_106547832	3300025909	Corn Rhizosphere	MPGSIKRAVAIVAGVLLGMAIAAGTSPWRELFRKTEPVQPAPIQRERAPDTRV
Ga0207705_114833452	3300025909	Corn Rhizosphere	MRVAGLVKRSVAVLVGVMLGMLLVAGSGPWRELLKKADPPPEPAPIQRERAPDLRA
Ga0207695_100211494	3300025913	Corn Rhizosphere	MPGSVKRAMAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV
Ga0207695_105690032	3300025913	Corn Rhizosphere	MAGSFKRAVAVVAGVVLGMAIAAGTGPWRELFKPSQPVQPAPVQRERAPDLRV
Ga0207671_104973032	3300025914	Corn Rhizosphere	VPASVKRALAVVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV
Ga0207649_113800432	3300025920	Corn Rhizosphere	MMPGPVKRAVAVLAGVVLGMVIAAGASPWRELLRKPEPAPSAPIQRERAPDTRV
Ga0207650_118335062	3300025925	Switchgrass Rhizosphere	MPGSVKRAMAIVAGIVLGMVIAAGASPWRELFRKTEPAQPAPIQRERAPDTRV
Ga0207687_104680602	3300025927	Miscanthus Rhizosphere	MPGSVKRAVAIVAGVVLGMLIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV
Ga0207690_102327472	3300025932	Corn Rhizosphere	MQRLLTRTLAILAGIALGMLIVAGSGPWRELLRKPDSPASAPIQRERAPDTRV
Ga0207690_103566131	3300025932	Corn Rhizosphere	MPGSFKRAVAIVAGVVLGMLIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV
Ga0207706_117411871	3300025933	Corn Rhizosphere	MQRFLTRTLAILAGIVLGMLVVAGSGPWRELFRKADSPASAPIQRERAP
Ga0207709_106071311	3300025935	Miscanthus Rhizosphere	MPGSVKRTVAIVAGVVLGMLIAAGASPWRELFRKTEPVQPAPIQRERAPDTRA
Ga0207667_100166142	3300025949	Corn Rhizosphere	MPGSVKRAMAIVAGIVLGMVIAAGASPWRELFRKTAPVQPAPIQRERAPDTRA
Ga0207667_105810452	3300025949	Corn Rhizosphere	MRVAGLFKRSVAVLVGVMLGMLLVAGSGSWRELRSKPEAPKPAPIQRERAPDLRA
Ga0207667_108184682	3300025949	Corn Rhizosphere	MKRFLTRTLAVLAGIVLGMLLVSGAGPWRELFRKPDTATPPPIQRERAPDTRV
Ga0207651_100120354	3300025960	Switchgrass Rhizosphere	VKGFLTRTLAILAGIVLGMLIVAGAAPWRELFRKSDTAPPAPIQRERAPDTRV
Ga0207712_116549641	3300025961	Switchgrass Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPAQPAPIQRERAP
Ga0207677_113822211	3300026023	Miscanthus Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELLRKTEPAQPAPIQRERAPDT
Ga0207678_101392242	3300026067	Corn Rhizosphere	MPGSVKRAMAIVAGIVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV
Ga0207674_106672201	3300026116	Corn Rhizosphere	VVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV
Ga0207674_107727602	3300026116	Corn Rhizosphere	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQRE
Ga0207674_112422232	3300026116	Corn Rhizosphere	VVLGMVIAAGASPWRELFRKTEPVQPAPIQRERAPDTRV
Ga0209523_10587722	3300027548	Forest Soil	MQRFLTRTLAILAGIVLGMLVVAGSGPWRELLRKSDSPASAPIQRERAPDTRV
Ga0268264_119007902	3300028381	Switchgrass Rhizosphere	KRAVAIVAGVVLGMVIAAGASPWRELLRKTEPAQPAPIQRERAPDTRA
Ga0302151_100001515	3300028562	Bog	MGKATGFVARTAAVLLGVVLGMAIVAGASPWRELLKKSEPVPATPIQRERAPDQRV
Ga0302151_100715432	3300028562	Bog	MAGFLKRALAVVAGVVLGIVIVAGAGPWRELLKKPDATPPPTIQRERAPDTRV
Ga0265336_10000012122	3300028666	Rhizosphere	MSGFLKRAAAILAGVVLGMVIVAGAGPWRELLRKPEPVPTQPIQRERAPDTRV
Ga0302264_10667281	3300028732	Fen	MTRTLAILAGVVLGMLIVSGAAPWRELLRKPDTAPVEPIQRERAPDLRV
Ga0302202_102797602	3300028762	Bog	MAGFIKRAMAVLAGVVLGIVIVAGAGPWRELLKKPDPAPSTPIQRERAPDTRV
Ga0302260_11144092	3300028764	Fen	MPGFLKRTLAVLVGVVLGMAIVSGTSPWRELMKKPDDAPPAPIQREPAPDLRV
Ga0302279_1000040629	3300028783	Bog	MSGFLRRAAAVVAGILLGMLIVAGMNPWRELFRKPGATPPAPIQRERAPDTRA
Ga0302157_101261172	3300028813	Bog	VKRFLTRALAVVAGIVLGMLVVSGADPWRELFRKPDTAPPAPIQRERAPDTRV
Ga0302291_103126581	3300028865	Fen	VKGLFTRTLAVLAGIVLGMLVVAGSGPWRELFKKSDPAPPAPIQRERAPDTRV
Ga0247043_10359182	3300029895	Cryconite	MAGFLKRALAVVAGVALGILIVAGAGPWRELFRQPDAAPTQPIQRERAPDTRA
Ga0247044_10520952	3300029896	Cryconite	VKGVLTRTLAILAGIVLGMLIVSGSSPWRELFRKPEPVPSAPIQRERAPDQRV
Ga0302142_11803682	3300029920	Bog	TGFVARTAAVLLGVVLGMAIVAGASPWRELLKKSEPVPATPIQRERAPDQRV
Ga0311342_100944954	3300029955	Bog	GVVLGMAIVAGASPWRELLKKSEPVPATPIQRERAPDQRV
Ga0311336_109709631	3300029990	Fen	MTRTLSILAGVVLGMLIVSGAAPWRELLRKPDTAPVEPIQRERAPDLRV
Ga0311348_104719312	3300030019	Fen	VKGLLTRTLAVLAGIVLGMLVVAGSGPWRELFKKSDPAPPAPIQRQRAPDTRV
Ga0311333_101046072	3300030114	Fen	MTRTLAILAGVALGMLIVSGAGPWRQLFKSPANAAPAPIQRERAPDQRV
Ga0311333_103442241	3300030114	Fen	VVLGMLIVSGAAPWRELLRKPDTAPVEPIQRERAPDLRV
Ga0302193_101658252	3300030519	Bog	KARASADMGKATGFVARTAAVLLGVVLGMAIVAGASPWRELLKKSEPVPATPIQRERAPDQRV
Ga0311372_10000316116	3300030520	Palsa	MKGFLTRTLAVLAGIVLGMLVVAGSGPWRELFKKPDTAPPAPIQRERAPDQRV
Ga0311372_1000938011	3300030520	Palsa	MKGFLTRTLAVVAGIVLGMLVVSGSGPWRELFKKPDTAPPAPIQRERAPDQRV
Ga0311372_101871102	3300030520	Palsa	MAGFLKRALAILAGVVLGIVIVAGASPWRELRKKPDATPPPTIQRERAPDTRV
Ga0311372_130424212	3300030520	Palsa	MKGFLTRTLAVLAGIVLGMLVVSGSGPWRELFRKPDNTPPAPIQRERAPDQRV
Ga0307511_100905502	3300030521	Ectomycorrhiza	MMPGPVKRAVAILAGVVLGMVIAAGASPWRELLRKPEPASSAPIQRERAPDTRV
Ga0302309_101011162	3300030687	Palsa	MKGFLTRTLAVLAGIVLGMLVVAGSDPWRELFNKPDTAPPAPIQRERAPDQRV
Ga0311345_107818681	3300030688	Bog	MAGFIKRAMAVLAGVVLGIVIVAGAGPWRELLKKPDPAPSTPIQRERAPDTR
Ga0302311_109807702	3300030739	Palsa	FLTRTLAVVAGIVLGMLVVSGSGPWRELFKKPDTAPPAPIQRERAPDQRV
Ga0311366_106687891	3300030943	Fen	VKGLLTRTLAVLAGIVLGMLVVAGSGPWRELFKKSDPAPPAPIQRERAPDTRV
Ga0302323_1020585882	3300031232	Fen	MRGFMTRTLAILAGVALGMLIVSGAGPWRQLFKSPANAAPAPIQRERAPDQRV
Ga0318516_100377281	3300031543	Soil	MPGSFKRAAAVLAGVVLGMAVAAGPSPWRELLRKTAPVQPAPIQRERAPDTRV
Ga0307508_108806732	3300031616	Ectomycorrhiza	GVVLGMVVAAGASPWRELFRKTEPVQPAPIQRERAPDTRA
Ga0310813_100189923	3300031716	Soil	MPGSVKRAMAIVAGIVLGMVIAAGASPWRELFRKTEPAPPAQIQRERAPDTRV
Ga0318500_100042493	3300031724	Soil	MPGSVKRAAAVLAGVVLGMAVAAGPSPWRELLRKTAPVQPAPIQRERAPDTRV
Ga0302321_1036490402	3300031726	Fen	KASRSAEMSKAPGFLARAVAVLLGVVLGMAAVAGASPWRELLKKSEPAPSAPIQRERAPDQRV
Ga0307516_1000976910	3300031730	Ectomycorrhiza	MRVADFIKRTLAIVAGVVLGMLIVSGSGPWRELFIKKPDPTPPAPIQRERAPDTRV
Ga0307516_103943462	3300031730	Ectomycorrhiza	VKGFLTRTLAILAGIVLGMLIVSGSGPWRELFDKKPDPAPSAPIQREPAPDTRV
Ga0318512_103945032	3300031846	Soil	MPGSVKRAVAVVAGVVLGMVIAAGASPWRELLRKDEPVQPAPIQRERAPDTRV
Ga0308174_112340162	3300031939	Soil	MRPGPVKRAAAILAGVVLGMAIAAGAAPWRGLLRRTEPPASAPIPRERAPDTRV
Ga0308174_116033842	3300031939	Soil	VKRLLTRTLAILAGIVLGMVIVAGSGPWRELFTKPDTTPPAPIQRERAPDTRV
Ga0308176_126700382	3300031996	Soil	MPGSIKRAMAIVAGIVLGMVIAAGASPWRELFRKTAPVQPAPIQRERAPDTRA
Ga0318549_100179323	3300032041	Soil	MPGSFKRAAAVLAGVVLGMAVAAGPSPWRELLRKTAPVQPAPI
Ga0308173_100108263	3300032074	Soil	MRPGPVKRAAAILAGVVLGVAIAAGAAPWRGLLRRTEPPASAPIPRERAPDTRV
Ga0308173_109644332	3300032074	Soil	MAGFLKRTLAVLAGIVLGMLVVAGAGPWRELLRKPDAASAPPTPVPRERAPDTRV
Ga0335083_101373782	3300032954	Soil	MAAMGSLKRAAAILAGVVLGIVIAAGASPWRELFRKPDNAPPAPIQRERAPDTRV
Ga0370494_191095_340_501	3300034130	Untreated Peat Soil	MKGLFTRTLAILAGIVMGMLIVSGSGPWRELFKKSDTAPPAPIQRERAPDQRA
Ga0370487_0161714_228_395	3300034170	Untreated Peat Soil	MKAAGLLARTAAVLVGVVLGMAIVAGASPWRALMKKSDPAPATPIQRERAPDQRV
Ga0373959_0065649_195_356	3300034820	Rhizosphere Soil	MPGSVKRAMAIVAGIVLGMVIAAGVSPWRELFRKTEPVQPAPIQRERAPDTRV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F040130

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences