Metagenome / Metatranscriptome Family F039901

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F039901
Family Type	Metagenome / Metatranscriptome
Number of Sequences	162
Average Sequence Length	46 residues
Representative Sequence	MDTPANGGARPPEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Number of Associated Samples	77
Number of Associated Scaffolds	162

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	60.49 %
% of genes near scaffold ends (potentially truncated)	46.91 %
% of genes from short scaffolds (< 2000 bps)	86.42 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (77.160 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.185 % of family members)
Environment Ontology (ENVO)	Unclassified (64.198 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.753 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.59% β-sheet: 0.00% Coil/Unstructured: 55.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 162 Family Scaffolds
PF00248	Aldo_ket_red	2.47
PF02518	HATPase_c	1.85
PF00892	EamA	1.23
PF05974	DUF892	1.23
PF03061	4HBT	0.62
PF13185	GAF_2	0.62
PF03450	CO_deh_flav_C	0.62
PF09285	Elong-fact-P_C	0.62
PF08734	GYD	0.62
PF01977	UbiD	0.62
PF07883	Cupin_2	0.62
PF16861	Carbam_trans_C	0.62
PF02738	MoCoBD_1	0.62
PF04519	Bactofilin	0.62
PF04828	GFA	0.62
PF13478	XdhC_C	0.62
PF07969	Amidohydro_3	0.62
PF14849	YidC_periplas	0.62
PF07045	DUF1330	0.62
PF04226	Transgly_assoc	0.62
PF01522	Polysacc_deac_1	0.62
PF13493	DUF4118	0.62
PF10003	DUF2244	0.62
PF00072	Response_reg	0.62

COG ID	Name	Functional Category	% Frequency in 162 Family Scaffolds
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	1.23
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.62
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.62
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.62
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.62
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.62
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.62
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
All Organisms	root	All Organisms	22.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
cellular organisms	root	All Organisms → cellular organisms	22.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	22.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.05 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.20 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.02 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.23 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.62 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.62 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.23 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.62 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.62 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	3.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.23 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.62 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.62 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.16 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	3.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.23 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.62 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.62 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10000671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12660	Open in IMG/M
3300005332\|Ga0066388_100499601	Not Available	1852	Open in IMG/M
3300005332\|Ga0066388_101064363	Not Available	1364	Open in IMG/M
3300005332\|Ga0066388_101912775	Not Available	1060	Open in IMG/M
3300005332\|Ga0066388_102554864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	929	Open in IMG/M
3300005332\|Ga0066388_103113930	Not Available	847	Open in IMG/M
3300005332\|Ga0066388_104366696	Not Available	720	Open in IMG/M
3300005332\|Ga0066388_106607449	Not Available	584	Open in IMG/M
3300005332\|Ga0066388_108030806	Not Available	527	Open in IMG/M
3300005363\|Ga0008090_15419994	Not Available	504	Open in IMG/M
3300005764\|Ga0066903_100101524	All Organisms → cellular organisms → Bacteria	3889	Open in IMG/M
3300005764\|Ga0066903_101111362	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300005764\|Ga0066903_101731273	Not Available	1191	Open in IMG/M
3300005764\|Ga0066903_105403634	Not Available	674	Open in IMG/M
3300005764\|Ga0066903_105478492	Not Available	669	Open in IMG/M
3300005764\|Ga0066903_105926279	Not Available	641	Open in IMG/M
3300005764\|Ga0066903_108975316	Not Available	506	Open in IMG/M
3300010048\|Ga0126373_10134510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2331	Open in IMG/M
3300010048\|Ga0126373_10821202	Not Available	992	Open in IMG/M
3300010048\|Ga0126373_11940701	Not Available	652	Open in IMG/M
3300010048\|Ga0126373_11959351	Not Available	648	Open in IMG/M
3300010358\|Ga0126370_11957743	Not Available	572	Open in IMG/M
3300010358\|Ga0126370_12042850	Not Available	561	Open in IMG/M
3300010359\|Ga0126376_11182179	Not Available	778	Open in IMG/M
3300010360\|Ga0126372_12480551	Not Available	569	Open in IMG/M
3300010361\|Ga0126378_10974652	Not Available	952	Open in IMG/M
3300010366\|Ga0126379_10984136	Not Available	948	Open in IMG/M
3300010376\|Ga0126381_100222157	Not Available	2540	Open in IMG/M
3300010376\|Ga0126381_100247490	Not Available	2413	Open in IMG/M
3300010376\|Ga0126381_100946622	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300010376\|Ga0126381_101292343	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300010376\|Ga0126381_102919807	Not Available	680	Open in IMG/M
3300010376\|Ga0126381_103201344	Not Available	647	Open in IMG/M
3300010376\|Ga0126381_103530197	Not Available	614	Open in IMG/M
3300010376\|Ga0126381_104374491	Not Available	546	Open in IMG/M
3300010398\|Ga0126383_11551748	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300010863\|Ga0124850_1011385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2828	Open in IMG/M
3300012948\|Ga0126375_11839482	Not Available	530	Open in IMG/M
3300012971\|Ga0126369_13232182	Not Available	534	Open in IMG/M
3300015371\|Ga0132258_10072176	All Organisms → cellular organisms → Bacteria → Proteobacteria	8010	Open in IMG/M
3300016270\|Ga0182036_10211992	Not Available	1427	Open in IMG/M
3300016294\|Ga0182041_10838309	Not Available	823	Open in IMG/M
3300016294\|Ga0182041_11687867	Not Available	586	Open in IMG/M
3300016319\|Ga0182033_11794822	Not Available	557	Open in IMG/M
3300016357\|Ga0182032_10521057	Not Available	980	Open in IMG/M
3300016357\|Ga0182032_11641900	Not Available	560	Open in IMG/M
3300016357\|Ga0182032_11721099	Not Available	547	Open in IMG/M
3300016371\|Ga0182034_10333653	Not Available	1226	Open in IMG/M
3300016371\|Ga0182034_10373395	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300016371\|Ga0182034_10591812	Not Available	935	Open in IMG/M
3300016371\|Ga0182034_11078290	Not Available	696	Open in IMG/M
3300016371\|Ga0182034_11359240	Not Available	620	Open in IMG/M
3300016387\|Ga0182040_10209980	Not Available	1437	Open in IMG/M
3300016387\|Ga0182040_10359544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1131	Open in IMG/M
3300016387\|Ga0182040_10557968	Not Available	922	Open in IMG/M
3300016404\|Ga0182037_11800378	Not Available	547	Open in IMG/M
3300016404\|Ga0182037_11909425	Not Available	532	Open in IMG/M
3300016422\|Ga0182039_10862604	Not Available	807	Open in IMG/M
3300016422\|Ga0182039_11794865	Not Available	562	Open in IMG/M
3300016422\|Ga0182039_12246169	Not Available	504	Open in IMG/M
3300016445\|Ga0182038_10072558	All Organisms → cellular organisms → Bacteria	2398	Open in IMG/M
3300016445\|Ga0182038_11658290	Not Available	576	Open in IMG/M
3300016445\|Ga0182038_11742426	Not Available	562	Open in IMG/M
3300017933\|Ga0187801_10173198	Not Available	848	Open in IMG/M
3300017973\|Ga0187780_10061339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2592	Open in IMG/M
3300021560\|Ga0126371_10013215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7496	Open in IMG/M
3300021560\|Ga0126371_10038757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4504	Open in IMG/M
3300021560\|Ga0126371_10519183	Not Available	1340	Open in IMG/M
3300021560\|Ga0126371_10600026	Not Available	1250	Open in IMG/M
3300021560\|Ga0126371_12072934	Not Available	685	Open in IMG/M
3300021560\|Ga0126371_12295929	Not Available	652	Open in IMG/M
3300026845\|Ga0207760_103842	Not Available	1314	Open in IMG/M
3300026896\|Ga0207730_1017929	Not Available	603	Open in IMG/M
3300027003\|Ga0207722_1022628	Not Available	690	Open in IMG/M
3300027035\|Ga0207776_1038497	Not Available	590	Open in IMG/M
3300027042\|Ga0207766_1028067	Not Available	632	Open in IMG/M
3300027680\|Ga0207826_1018445	Not Available	1917	Open in IMG/M
3300027703\|Ga0207862_1024525	Not Available	1805	Open in IMG/M
3300027703\|Ga0207862_1031863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1585	Open in IMG/M
3300027703\|Ga0207862_1155357	Not Available	684	Open in IMG/M
3300027874\|Ga0209465_10000017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	66894	Open in IMG/M
3300031543\|Ga0318516_10807623	Not Available	530	Open in IMG/M
3300031544\|Ga0318534_10130273	Not Available	1448	Open in IMG/M
3300031545\|Ga0318541_10265529	Not Available	955	Open in IMG/M
3300031546\|Ga0318538_10497902	Not Available	660	Open in IMG/M
3300031546\|Ga0318538_10687322	Not Available	555	Open in IMG/M
3300031564\|Ga0318573_10194225	Not Available	1075	Open in IMG/M
3300031564\|Ga0318573_10298515	Not Available	862	Open in IMG/M
3300031573\|Ga0310915_10319698	Not Available	1098	Open in IMG/M
3300031680\|Ga0318574_10194441	Not Available	1164	Open in IMG/M
3300031681\|Ga0318572_10541969	Not Available	693	Open in IMG/M
3300031681\|Ga0318572_10611681	Not Available	649	Open in IMG/M
3300031719\|Ga0306917_10101612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2064	Open in IMG/M
3300031736\|Ga0318501_10435766	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300031744\|Ga0306918_10723496	Not Available	779	Open in IMG/M
3300031764\|Ga0318535_10500768	Not Available	540	Open in IMG/M
3300031769\|Ga0318526_10275138	Not Available	689	Open in IMG/M
3300031771\|Ga0318546_10823572	Not Available	653	Open in IMG/M
3300031777\|Ga0318543_10006029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3991	Open in IMG/M
3300031777\|Ga0318543_10494655	Not Available	548	Open in IMG/M
3300031780\|Ga0318508_1239783	Not Available	521	Open in IMG/M
3300031781\|Ga0318547_10539957	Not Available	721	Open in IMG/M
3300031782\|Ga0318552_10656300	Not Available	535	Open in IMG/M
3300031796\|Ga0318576_10623180	Not Available	508	Open in IMG/M
3300031805\|Ga0318497_10095460	Not Available	1590	Open in IMG/M
3300031819\|Ga0318568_10303346	Not Available	992	Open in IMG/M
3300031819\|Ga0318568_10346116	Not Available	925	Open in IMG/M
3300031845\|Ga0318511_10470582	Not Available	580	Open in IMG/M
3300031879\|Ga0306919_10128343	Not Available	1824	Open in IMG/M
3300031879\|Ga0306919_10163863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1631	Open in IMG/M
3300031879\|Ga0306919_10327000	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300031879\|Ga0306919_10389322	Not Available	1068	Open in IMG/M
3300031879\|Ga0306919_11318474	Not Available	546	Open in IMG/M
3300031890\|Ga0306925_10322178	Not Available	1661	Open in IMG/M
3300031890\|Ga0306925_10893923	Not Available	914	Open in IMG/M
3300031890\|Ga0306925_11160352	Not Available	777	Open in IMG/M
3300031897\|Ga0318520_10933701	Not Available	547	Open in IMG/M
3300031910\|Ga0306923_10123477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2940	Open in IMG/M
3300031910\|Ga0306923_10642234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1187	Open in IMG/M
3300031910\|Ga0306923_10675586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1152	Open in IMG/M
3300031910\|Ga0306923_11883343	Not Available	611	Open in IMG/M
3300031912\|Ga0306921_10183623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2452	Open in IMG/M
3300031912\|Ga0306921_10808121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1070	Open in IMG/M
3300031912\|Ga0306921_11476638	Not Available	744	Open in IMG/M
3300031941\|Ga0310912_10241585	Not Available	1388	Open in IMG/M
3300031941\|Ga0310912_10254392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1352	Open in IMG/M
3300031942\|Ga0310916_10074573	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2665	Open in IMG/M
3300031942\|Ga0310916_11403129	Not Available	572	Open in IMG/M
3300031942\|Ga0310916_11676705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	514	Open in IMG/M
3300031946\|Ga0310910_10548148	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300031946\|Ga0310910_11006097	Not Available	651	Open in IMG/M
3300031947\|Ga0310909_11665095	Not Available	504	Open in IMG/M
3300031954\|Ga0306926_10158838	Not Available	2801	Open in IMG/M
3300031954\|Ga0306926_10497547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1498	Open in IMG/M
3300031954\|Ga0306926_11733861	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300031954\|Ga0306926_12056942	Not Available	640	Open in IMG/M
3300031981\|Ga0318531_10154897	Not Available	1027	Open in IMG/M
3300031981\|Ga0318531_10245445	Not Available	808	Open in IMG/M
3300032035\|Ga0310911_10358624	Not Available	842	Open in IMG/M
3300032039\|Ga0318559_10144476	Not Available	1078	Open in IMG/M
3300032059\|Ga0318533_10925098	Not Available	640	Open in IMG/M
3300032059\|Ga0318533_10942496	Not Available	633	Open in IMG/M
3300032076\|Ga0306924_10902326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	977	Open in IMG/M
3300032076\|Ga0306924_11357874	Not Available	760	Open in IMG/M
3300032091\|Ga0318577_10029082	Not Available	2373	Open in IMG/M
3300032094\|Ga0318540_10468318	Not Available	609	Open in IMG/M
3300032261\|Ga0306920_100056003	Not Available	5741	Open in IMG/M
3300032261\|Ga0306920_100203405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2955	Open in IMG/M
3300032261\|Ga0306920_100330860	All Organisms → cellular organisms → Bacteria → Proteobacteria	2268	Open in IMG/M
3300032261\|Ga0306920_100526271	Not Available	1753	Open in IMG/M
3300032261\|Ga0306920_101636493	Not Available	914	Open in IMG/M
3300032261\|Ga0306920_101965946	Not Available	820	Open in IMG/M
3300032261\|Ga0306920_102023335	Not Available	806	Open in IMG/M
3300032261\|Ga0306920_102202482	Not Available	766	Open in IMG/M
3300032261\|Ga0306920_102755359	Not Available	670	Open in IMG/M
3300032261\|Ga0306920_103406361	Not Available	590	Open in IMG/M
3300032261\|Ga0306920_104242851	Not Available	516	Open in IMG/M
3300033289\|Ga0310914_10251557	Not Available	1587	Open in IMG/M
3300033289\|Ga0310914_10467433	Not Available	1142	Open in IMG/M
3300033289\|Ga0310914_10864682	Not Available	803	Open in IMG/M
3300033289\|Ga0310914_11042014	Not Available	718	Open in IMG/M
3300033289\|Ga0310914_11862633	Not Available	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.38%
Host-Associated	Host-Associated	0.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.77%
Aquatic	Environmental → Aquatic	0.62%
Plants	Host-Associated → Plants	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.77%
Freshwater	Environmental → Aquatic → Freshwater	0.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.48%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.20%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.62%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.62%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.62%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300026896	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 71 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027042	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_1000067110	3300004633	Tropical Forest Soil	MDALANGGARPPEDVVVDTRYIYTLALALVGLAATTSAILFLFIDF*
Ga0066388_1004996013	3300005332	Tropical Forest Soil	MDIPANGVARLPEDVVVDTRYIYALALALVGLALATCVILPLMIDF*
Ga0066388_1010643632	3300005332	Tropical Forest Soil	MHTPVGAQPLEDVVIGTRYIYTLALALVGLALATCAILFLIIDF*
Ga0066388_1019127752	3300005332	Tropical Forest Soil	MDTPEYGGVRPPEDVIVDTRYIYTLALALVGLALATCAILFLIIDF*
Ga0066388_1025548642	3300005332	Tropical Forest Soil	MYTPTNGGVGAQPLADAVVSTRYIYTLALALMGLALATCAILFLMIDF*
Ga0066388_1031139302	3300005332	Tropical Forest Soil	MDIPANGVARLPEDVVVDTRYIYMLALALVGLALATCAILFLMIDF*
Ga0066388_1043666961	3300005332	Tropical Forest Soil	MDTPANGRVGAQPLEDVVIGARYIYTLALALVGLALGTCAILFLMIDF*
Ga0066388_1066074491	3300005332	Tropical Forest Soil	MYTPANGGARPPEDVVVGARYIYTLALALVGLALATCAILFLMIDF*
Ga0066388_1080308061	3300005332	Tropical Forest Soil	MDIRANGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF*
Ga0008090_154199942	3300005363	Tropical Rainforest Soil	MMDTPANGGVGARPLEDVVVGTRYIYTLALALVGLALATCAILFLMIDF*
Ga0066903_1001015243	3300005764	Tropical Forest Soil	MDTPANAGPPEDAVVDTRYIYTLALALVGLALATCAILFLMIDF*
Ga0066903_1011113622	3300005764	Tropical Forest Soil	MYTPANGEVRAGPLEDVVVNTRYIYTLALALVGLALATCAILFLMIDF*
Ga0066903_1017312732	3300005764	Tropical Forest Soil	MDIPANGGARLPEDVVIDTRYIYMLALALVGLALASCAILFSMIDF*
Ga0066903_1054036342	3300005764	Tropical Forest Soil	MVSQEDAMDIPANGAARLPEDVVVGTRYIYTLALALVGLALATCVILSLMIGF*
Ga0066903_1054784922	3300005764	Tropical Forest Soil	MEVSQEGAMETPADGGVGAQPLEDVVIGTRYIYTLALALVGLALATCAILFLFIDF*
Ga0066903_1059262792	3300005764	Tropical Forest Soil	MDTPANVARPPEDVVVGTRYIYTLALALLGLALATCAILFLMIDF*
Ga0066903_1089753161	3300005764	Tropical Forest Soil	MHTPVGAQPLEDVVVDTRYIYTLALALVGLALATCAILFLMIDF*
Ga0126373_101345102	3300010048	Tropical Forest Soil	MYTPTNGGVGAQPLADAVVSTRYIYTLALALMGLALATCAILFLLIDF*
Ga0126373_108212021	3300010048	Tropical Forest Soil	ARLPEDVVIDTRYIYMLALALVGLALASCAILFSMIDF*
Ga0126373_119407011	3300010048	Tropical Forest Soil	MDIPVNGGARLPEDVVVDTRYIYMLALALVGLALATCAIL
Ga0126373_119593511	3300010048	Tropical Forest Soil	YTPANGGARPPEDVVVGARYIYTLALALVGLALATCAILFLMIDF*
Ga0126370_119577431	3300010358	Tropical Forest Soil	MDTPANGGAEPIDVVVDTRYIYTLALALVGLALATSTVLFLFMDF*
Ga0126370_120428502	3300010358	Tropical Forest Soil	MEMSQEGAMDTPANVGAQPLQDVVVGTRYIYTLALALVGLALATCAILFLMIDF*
Ga0126376_111821791	3300010359	Tropical Forest Soil	MDIPANGVARLSEDVVVDTRYIYALALALVGLALATCV
Ga0126372_124805512	3300010360	Tropical Forest Soil	MYTPANGGARPPEDVVVGARYIYTLALALVGLALATCAI
Ga0126378_109746523	3300010361	Tropical Forest Soil	AMDIPVNGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF*
Ga0126379_109841361	3300010366	Tropical Forest Soil	MDIPANGVARLPEDVVVDTRYIYMLALALVGLALATCAILFLMIDF
Ga0126381_1002221571	3300010376	Tropical Forest Soil	MYTPANGGARPPEDVVVGARYIYTLALALVGLALAT
Ga0126381_1002474902	3300010376	Tropical Forest Soil	MDTPEYGGVRPPEDVIVDTRYIYTLALALVGLALATSAVLFLFIDF*
Ga0126381_1009466221	3300010376	Tropical Forest Soil	PANGGARPPEDVVVGARYIYTLALALVGLALATCAILFLMIDF*
Ga0126381_1012923431	3300010376	Tropical Forest Soil	MHTPANGGARLPEDVVVDTRYIYTLALALVGLAAATSAILFSLIDF*
Ga0126381_1029198071	3300010376	Tropical Forest Soil	MDIPANGAARLPEDVVVGTRYIYTLALALVGLALATCVILSLMIGF*
Ga0126381_1032013441	3300010376	Tropical Forest Soil	MYTPANGGARPPEDAVVGARYIYTLALALVGLALATCAILFLMIDF
Ga0126381_1035301971	3300010376	Tropical Forest Soil	GVARLPEDVVVGTRYIYTLAIALVGLALATCATLFLMIDF*
Ga0126381_1043744912	3300010376	Tropical Forest Soil	MDIPANGGARLPEDVVVDARYIYILALTLVGLAAATSAILFLMIDF*
Ga0126383_115517482	3300010398	Tropical Forest Soil	MHTPANGGARLPEDVVVDTRYIYTLALALVGLAAATSALLFLFIDF*
Ga0124850_10113853	3300010863	Tropical Forest Soil	MHTPANGGARLPEDVVVDTRYIYVLALALVGLAAATSAILFSLIDF*
Ga0126375_118394821	3300012948	Tropical Forest Soil	METPADGGVGAQPLEDVVIGTRYIYTLALALVGLALATCAILFLFIDF*
Ga0126369_132321822	3300012971	Tropical Forest Soil	PQDLVIDTRYIYMLALALVGLALASCAILFSMIDF*
Ga0132258_100721765	3300015371	Arabidopsis Rhizosphere	MNTPANPPEDVIVDTRYIYTLALALVGLALATSAMLFLFIDF*
Ga0182036_102119923	3300016270	Soil	GARLPEDVVVGTRYIYTLALALVGLALATCAILLLMIDF
Ga0182041_108383092	3300016294	Soil	GAQPLQDVVIGTRYIYTLALALVGLALATCAILFLMIDF
Ga0182041_116878671	3300016294	Soil	MDTPANGGVGAQPLEDVIIGTRYIYTLALDLVGLALATCAILFLMIDF
Ga0182033_117948222	3300016319	Soil	ELAPSVSQEGAMDTPADVVVGTRYIYTLALALVGLALAACAILPLMIDF
Ga0182032_105210571	3300016357	Soil	MDIPANDGARLPEDVVIDTRYIYMLALALVGRALSSCAILFSMIDF
Ga0182032_116419002	3300016357	Soil	RPGIISELARSVSQEGAMNTPANGGVVVGTRHIYSFALALMCMALATSAILFLMIDF
Ga0182032_117210991	3300016357	Soil	MYTPANGEVRPLEDVVVSTRYIYTLALALVGLALATCA
Ga0182034_103336531	3300016371	Soil	MDTPANGGVGAQPLEDVVVGTHYIYTLALALVGLALATCAIL
Ga0182034_103733951	3300016371	Soil	MELLQEGAMYTPANGEVRAQALEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0182034_105918121	3300016371	Soil	MDVLQEGAMDTPANGGVGAQPLQDVVIGTRYIYTLALALVGLALATCAILFLMIDF
Ga0182034_110782901	3300016371	Soil	GIISELAPSVSQEGAMDTPADVVVGTRYIYTLALALVGLALAACAILPLMIDF
Ga0182034_113592401	3300016371	Soil	MYIPANGGARLPEDVVVDTRYIYMLALALLGLALATCAIL
Ga0182040_102099802	3300016387	Soil	VSSLDQCHMDAPANGGDRPPDDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0182040_103595441	3300016387	Soil	MDIRPNGGARLPEDVVVDMRYIYMLALALVGLALATCAILFSMIDF
Ga0182040_105579683	3300016387	Soil	GGARLPEDVVVDTRYIYMLALALVGLALASCAILFSMIDF
Ga0182037_118003781	3300016404	Soil	LMDVLQEGAMDTPANGGVGAQPLQDVVIGTRYIYTLALALVGLALATCAILFLMIDF
Ga0182037_119094251	3300016404	Soil	MDIPANDGARLPEDVVIGTRYIYTLALALVGLAAATSAILFLF
Ga0182039_108626041	3300016422	Soil	MELLQEGAMYTPANGEVRAQALEDVVVGTRYICTLALTLVGLALATCAILFLMIDF
Ga0182039_117948651	3300016422	Soil	VDTPVNDVVVGTRYIYTLALALVGLALATCAILFL
Ga0182039_122461691	3300016422	Soil	MDSLANGGARLPEDVVVDTRYIYMLALALVGLALAT
Ga0182038_100725583	3300016445	Soil	VLQEGAMDTPANAGPPEDAVVDTRYIYTLALALVGLALATCAILFLMIDF
Ga0182038_116582901	3300016445	Soil	MDTPANGGARPPDDVVVDTRYIYTLALALVGLAATTSAILFLFIDF
Ga0182038_117424261	3300016445	Soil	MYTPANGEVRPLEDVVVSTRYIYTLALALVGLALATCAMLFLLIDF
Ga0187801_101731982	3300017933	Freshwater Sediment	MDTPANDVVIGTRYIYTLALALVGLALATCAILFLMIDF
Ga0187780_100613395	3300017973	Tropical Peatland	MNNPANDVVIGAGYIYTLALALVGLALATCAILFLMTDF
Ga0126371_100132151	3300021560	Tropical Forest Soil	MHTPANGGARLPEDVVVDTRYIYVLALALVGLAAATSAILFSLIDF
Ga0126371_1003875710	3300021560	Tropical Forest Soil	MYTPANGGARPPEDVVVGARYIYTLALALVGLALATCAILFLMIDF
Ga0126371_105191832	3300021560	Tropical Forest Soil	MDTPANVARPPEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0126371_106000261	3300021560	Tropical Forest Soil	NRRDAMDIPVNGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0126371_120729341	3300021560	Tropical Forest Soil	ISELAPSVSQEGAMDTLANGGARPPEDVVVDTRYIYTLALALVGLALATSAMLFLFLDF
Ga0126371_122959292	3300021560	Tropical Forest Soil	MYTPATGGARPPEDAVVGARYIYTLALALVGLALATCAILFL
Ga0207760_1038422	3300026845	Tropical Forest Soil	MDTPANGGARPPEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0207730_10179291	3300026896	Tropical Forest Soil	AQPLQDVVIGTRYIYTLALALVGLALATCAILFLMIDF
Ga0207722_10226281	3300027003	Tropical Forest Soil	DTPVNGGVGAQPLQDVVIGTRYIYTLALALVGLALATCAILFLMIDF
Ga0207776_10384971	3300027035	Tropical Forest Soil	GAQPLQDVVIGTRYIYTLALALVGLALATCAILLLMIDF
Ga0207766_10280671	3300027042	Tropical Forest Soil	MDTPENGGARPPEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0207826_10184455	3300027680	Tropical Forest Soil	MDTPENGGARPPEDVVVGPRYIYTLALALVGLALATCAILFWMIDF
Ga0207862_10245252	3300027703	Tropical Forest Soil	MDTPANGARPPQDVVVSTRYIYTLALALVGLALATLVILFLLIDF
Ga0207862_10318631	3300027703	Tropical Forest Soil	RWSQEGAMDTPENGGARPPEDVVVGPRYIYTLALALVGLALATCAILFLFIDF
Ga0207862_11553571	3300027703	Tropical Forest Soil	MDTPTNGGVGAQPLEDVVIGTRYIYTLALALVGLALATSAILFLFIDF
Ga0209465_1000001749	3300027874	Tropical Forest Soil	MDALANGGARPPEDVVVDTRYIYTLALALVGLAATTSAILFLFIDF
Ga0318516_108076231	3300031543	Soil	MDTPADVVVGTRYIYTLALALVGLALATCVILPLMIDF
Ga0318534_101302734	3300031544	Soil	MDIRVNGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0318541_102655292	3300031545	Soil	MDIRPNGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0318538_104979021	3300031546	Soil	MDIAAIGGARLPEDVVVGTRYIYTLALALVGLALATCAILLLMIDF
Ga0318538_106873221	3300031546	Soil	MDIAAIGGARLPEDVVVGTRYIYPLALALVGLALATCAILLLTID
Ga0318573_101942252	3300031564	Soil	MDVLQEGAMDTPANVGQPLEDVVVGTHYIYTLALALVGLALATCAILFLMIDF
Ga0318573_102985151	3300031564	Soil	ASSVSQEGAVDTPVNDVVVGTRYIYTLALALVGLALATCAILLLMIDF
Ga0310915_103196982	3300031573	Soil	MDIPANGAARLPEDVVVDTRYIYTLALALVGLALATCAILFSMIDF
Ga0318574_101944412	3300031680	Soil	MDTPANGGARPPEAVVVGTRYIYTLALALVGLALATCAILLLMIDF
Ga0318572_105419692	3300031681	Soil	MDIPANGGARLPEDVVVDTRYIYALALALVGLAAATSAILFLFIDF
Ga0318572_106116811	3300031681	Soil	ELASSVSQEGAVDTPVNDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0306917_101016124	3300031719	Soil	MDTPANGGVGAQPLQDVVIGARYIYTLALALVGLALATCAILFLMIDF
Ga0318501_104357662	3300031736	Soil	MDALANGGARPPEDVVVDTRYIYTLALALVGLAATTSAILFL
Ga0306918_107234961	3300031744	Soil	VRSLDQCHMDTPANGGDRPPDDVVVDTRYIYTLALALVGLALATCAILFLMIDF
Ga0318535_105007681	3300031764	Soil	MDTPADVVVGTRYIYTLALALVGLALATCAILLLMIDF
Ga0318526_102751381	3300031769	Soil	MDALANGGGRPPDDVVVDTRYIYTLALALVGLAATTSAILFLFIDF
Ga0318546_108235721	3300031771	Soil	EGAMYTPANGEVRAQALEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0318543_100060293	3300031777	Soil	MDALANGGAPPPEDVVVDTRYIYTLALALVGLAATTSAILFLFIDF
Ga0318543_104946551	3300031777	Soil	GGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0318508_12397831	3300031780	Soil	MDVLQEGAMDTPANGGVGAQPLEDVIIGTRYIYTLALALVGLALATGAILFLMIDF
Ga0318547_105399572	3300031781	Soil	ATRSVVIGARYIYTLALALVGLALATCAILFLMIDF
Ga0318552_106563001	3300031782	Soil	PSVLMDVLQEGAMDTPANGGVGAQPLQDVVIGTRYIYTLALALVGLALATCAILFLMIDF
Ga0318576_106231801	3300031796	Soil	MDIAANGGARLPEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0318497_100954602	3300031805	Soil	VMDALANGGARPPEDVVVDTRYIYTLALALVGLAATTSAILFLFIDF
Ga0318568_103033463	3300031819	Soil	CHRRDAMDIPVNGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0318568_103461161	3300031819	Soil	MDIRPNGGARLPEEVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0318511_104705821	3300031845	Soil	MDIAANGGARLPEDVVVGTRYIYTLALALVGLALATCAILLLM
Ga0306919_101283431	3300031879	Soil	MDIAANGGARLPEDVVVGTRYIYTLALALVGLALATCAILLLMIDF
Ga0306919_101638634	3300031879	Soil	MDTPANGGVGAQPLQDVVIGTRYIYTLALALVGLALATC
Ga0306919_103270003	3300031879	Soil	AMDTPANAGPPEDAVVDTRYIYTLALALVGLALATCAILFLMIDF
Ga0306919_103893221	3300031879	Soil	GAMDALANGGARPPEDVVVDTRYIYTLALALVGLAATTSAILFLFIDF
Ga0306919_113184741	3300031879	Soil	GAMDTPANGGARPPEAVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0306925_103221782	3300031890	Soil	MYTPANGEVRPLEDVVVSTRYIYTLALALVGLALATCAMLFLMIDF
Ga0306925_108939233	3300031890	Soil	MDTPANVGQPLEDVVVGTHYIYTLALALVGLALATCAILFLMID
Ga0306925_111603524	3300031890	Soil	KGIISELAPSVSQEGAMDTPADVVVGTRYIYTLALALVGLALATCAILPLMIDF
Ga0318520_109337011	3300031897	Soil	MDIPVNGGARLPEDVVVDTRYIYMLALALVGLALATCAILFLMIDF
Ga0306923_101234771	3300031910	Soil	MDTPADVVVGTRYIYTLALALVGLALAACAILPLMIDF
Ga0306923_106422342	3300031910	Soil	MYTPANGEVRAQALEDVVVGTRYIYTLALALVGLALATSAILFLMIDF
Ga0306923_106755865	3300031910	Soil	SIGVSGGSMDTPADVVVGTRYIYTLALALVGLALATGAILPLMIDF
Ga0306923_118833432	3300031910	Soil	MDIPANGGARLPEDVVVDTRYIYMLALALVGLALATCAILFLMIDF
Ga0306921_101836232	3300031912	Soil	MYTPANGEVRAQALEDVVVGTRYICTLALALVGLALATCAILFLMIDF
Ga0306921_108081211	3300031912	Soil	MDIPANDGARLPEDVVIGTRYIYTLALALVGLAAATSAILFLFV
Ga0306921_114766381	3300031912	Soil	VSLLDQCHMDTPANGGDRPPDDVVVDTRYIYTLALALVGLALATCAILFLMIDF
Ga0310912_102415851	3300031941	Soil	MYTPANGEVRAQALEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0310912_102543921	3300031941	Soil	MDTPADVVVGTRYIYTLALALVGLALATGAILPLMIDF
Ga0310916_100745732	3300031942	Soil	MDTPANAGPPEDAVVDTRYIYTLALALVGLALATCAILFLMIDF
Ga0310916_114031291	3300031942	Soil	MDIPANGGGLPEDVVVDTRYIYMLALALVGLALATCAILFLMIDF
Ga0310916_116767052	3300031942	Soil	ISELAPSVSQEGAMDTPADVVVGTRYIYTLALALVGLALATGAILPLMIDF
Ga0310910_105481483	3300031946	Soil	EGAMDTPANAGPPEDAVVDTRYIYTLALALVGLALATCAILFLMIDF
Ga0310910_110060971	3300031946	Soil	RRDAIYIPVNGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0310909_116650951	3300031947	Soil	SELAPSVSQEGAMDTPADVVVGTRYIYTLALALVGLALAACAILPLMIDF
Ga0306926_101588382	3300031954	Soil	VDTPVNDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0306926_104975471	3300031954	Soil	SELAPSVSQEGAMDTPADVVVGTRYIYTLALALVGLALATGAILPLMIDF
Ga0306926_117338612	3300031954	Soil	MDALANGGARPPEDVVVDTRYIYTLALAPVGLAATTSA
Ga0306926_120569421	3300031954	Soil	GGARLPEDVVVGTRYIYTLALALVGLALATCAILLLMIDF
Ga0318531_101548971	3300031981	Soil	DIAAIGGARLPEDVVVGTRYIYTLALALVGLALATCAILLLMIDF
Ga0318531_102454451	3300031981	Soil	MDIAAIGGARLPEDVVVGTRYIYTLALALVGLALATCAILLL
Ga0310911_103586242	3300032035	Soil	MDTPANGGVGAQPLQDVVIGTRYIYTLALALVGLALATCAILFLM
Ga0318559_101444761	3300032039	Soil	RDAMDIRPNGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0318533_109250982	3300032059	Soil	HTDTPANGGDRPPDDVVVDTRYIYTLALALVGLAMATCAILFLMIDF
Ga0318533_109424962	3300032059	Soil	PEDVVVGTRYIYTLALALVGLALATCAILFSMIDF
Ga0306924_109023264	3300032076	Soil	SQEGAMDTPADVVVGTRYIYTLALALVGLALATGAILPLMIDF
Ga0306924_113578741	3300032076	Soil	MVSEEGRHGEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0318577_100290821	3300032091	Soil	SELASSVSQEGAVDTPVNDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0318540_104683181	3300032094	Soil	AMDTPADVVVGTRYIYTLALALVGLALATCVILPLMIDF
Ga0306920_1000560037	3300032261	Soil	MDTPANGGARPPEAVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0306920_1002034051	3300032261	Soil	GIAPSVSQEGAMDTPASGGIVVGTRQIYSLAFALMCMALVVSAILFLMIDF
Ga0306920_1003308605	3300032261	Soil	MDTPANGGVGAQPLEDVVVGTHYIYTFALALVFMALATSAILFLLIDF
Ga0306920_1005262711	3300032261	Soil	ISELAPSVSQKGAMDTPADVVVGTRYIYTLALALVGLALAACAILPLMIDF
Ga0306920_1016364931	3300032261	Soil	MDTPANGGARPPDDVVVDTRYIYTLALALVGLALATCAILFLMIDL
Ga0306920_1019659462	3300032261	Soil	MDIPANGGARLPEDVVIDTRYIYMLALALVGLALASCAILFSMIDF
Ga0306920_1020233353	3300032261	Soil	MDTPANGGVVVGTRYIYTLALALVGLALATCAILFL
Ga0306920_1022024821	3300032261	Soil	RRDAMDIPANDGARLPEDVVIGTRYIYTLALALVGLAAATSAILFLFVDF
Ga0306920_1027553591	3300032261	Soil	MDIPANGAARLSEDVVVDTRYIYMLALALVGLALATCAILFLMIDF
Ga0306920_1034063612	3300032261	Soil	MDIPANGGARLPEDVVVDTRYIYMLALALVGLALATCAILFSMIDF
Ga0306920_1042428511	3300032261	Soil	MDIPANDGARLPEDVVIDTRYIYMLALALVGLALASCAILFLMIDF
Ga0310914_102515573	3300033289	Soil	KGIISELAPSVSQEGAMDTPADVVVGTRYIYTLALALVGLALAACAILPLMIDF
Ga0310914_104674332	3300033289	Soil	MDTPANGGDRPPDDVVVDTRYIYTLALALVGLALATCAILFLMIDF
Ga0310914_108646821	3300033289	Soil	MEVSHPSVLMEVLQEGAMDTPANAGPPEDAVVDTRYIYTLALALVGLALATCAILFLMID
Ga0310914_110420142	3300033289	Soil	VSQEGAMDTPADVVVGTRYIYTLALALVGLALATCVILPLMIDF
Ga0310914_118626331	3300033289	Soil	MDIPANDGARIPEDVVIGTRYIYTLALALVGLAAATSAILFLFVDF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F039901

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences