Metagenome / Metatranscriptome Family F039833

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F039833
Family Type	Metagenome / Metatranscriptome
Number of Sequences	163
Average Sequence Length	44 residues
Representative Sequence	VTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Number of Associated Samples	136
Number of Associated Scaffolds	163

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.48 %
% of genes near scaffold ends (potentially truncated)	95.71 %
% of genes from short scaffolds (< 2000 bps)	94.48 %
Associated GOLD sequencing projects	133
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.865 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.767 % of family members)
Environment Ontology (ENVO)	Unclassified (25.767 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.558 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 28.99% Coil/Unstructured: 71.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 163 Family Scaffolds
PF02798	GST_N	23.31
PF06823	DUF1236	11.04
PF05175	MTS	11.04
PF00082	Peptidase_S8	3.68
PF12697	Abhydrolase_6	2.45
PF03466	LysR_substrate	1.84
PF02562	PhoH	1.23
PF07581	Glug	1.23
PF13419	HAD_2	0.61
PF00872	Transposase_mut	0.61
PF05598	DUF772	0.61
PF00149	Metallophos	0.61
PF16694	Cytochrome_P460	0.61
PF04226	Transgly_assoc	0.61
PF00313	CSD	0.61
PF05231	MASE1	0.61
PF13589	HATPase_c_3	0.61

COG ID	Name	Functional Category	% Frequency in 163 Family Scaffolds
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	1.23
COG1875	Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains	General function prediction only [R]	1.23
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.61
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.61
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.61
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.61
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.61

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.87 %
Unclassified	root	N/A	6.13 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.87 %
Unclassified	root	N/A	6.13 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.87 %
Unclassified	root	N/A	6.13 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.60 %
Unclassified	root	N/A	6.13 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.37 %
Unclassified	root	N/A	6.13 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.07 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.61 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.11 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.43 %
Unclassified	root	N/A	6.13 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.45 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.43 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	7.36 %
Unclassified	root	N/A	6.13 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.84 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.61 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.43 %
unclassified Methylocystaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae	7.36 %
Unclassified	root	N/A	6.13 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.84 %
Rhizobiales bacterium 32-66-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 32-66-8	0.61 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.43 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	7.36 %
Unclassified	root	N/A	6.13 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.45 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.84 %
Rhizobiales bacterium 32-66-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 32-66-8	0.61 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.43 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	7.36 %
Unclassified	root	N/A	6.13 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.45 %
Bradyrhizobium sp. WSM3983	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	0.61 %
Bradyrhizobium sp. YR681	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	0.61 %
Bradyrhizobium sp. BRP22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BRP22	0.61 %
Rhizobiales bacterium 32-66-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 32-66-8	0.61 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.61 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04XYXSV	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	508	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10155833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	548	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10157396	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1040613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	605	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10094705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	632	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1063957	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300002074\|JGI24748J21848_1014453	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300005163\|Ga0066823_10074325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	658	Open in IMG/M
3300005328\|Ga0070676_10304485	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005332\|Ga0066388_101184894	All Organisms → cellular organisms → Bacteria → Proteobacteria	1304	Open in IMG/M
3300005332\|Ga0066388_107143622	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300005355\|Ga0070671_100326790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1307	Open in IMG/M
3300005364\|Ga0070673_101042302	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300005434\|Ga0070709_11302587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	586	Open in IMG/M
3300005546\|Ga0070696_100571029	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300005547\|Ga0070693_101675342	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300005556\|Ga0066707_10230877	All Organisms → cellular organisms → Bacteria → Proteobacteria	1202	Open in IMG/M
3300005586\|Ga0066691_10670672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300005591\|Ga0070761_11051114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	518	Open in IMG/M
3300005615\|Ga0070702_101699496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300005713\|Ga0066905_101438413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300005713\|Ga0066905_102275041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300005718\|Ga0068866_10753735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300005764\|Ga0066903_103088517	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300005764\|Ga0066903_105613129	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300005764\|Ga0066903_108946461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300005937\|Ga0081455_10574363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300006031\|Ga0066651_10702414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300006032\|Ga0066696_10101987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1726	Open in IMG/M
3300006034\|Ga0066656_10516068	All Organisms → cellular organisms → Bacteria → Proteobacteria	779	Open in IMG/M
3300006049\|Ga0075417_10486948	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
3300006163\|Ga0070715_11038271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300006800\|Ga0066660_11578437	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300006847\|Ga0075431_100976286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300006914\|Ga0075436_100357144	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300007076\|Ga0075435_101805818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	537	Open in IMG/M
3300009090\|Ga0099827_10332283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1290	Open in IMG/M
3300009137\|Ga0066709_100180484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2747	Open in IMG/M
3300009148\|Ga0105243_10838563	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300009156\|Ga0111538_11047707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1032	Open in IMG/M
3300009553\|Ga0105249_13263653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300010046\|Ga0126384_10915502	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300010047\|Ga0126382_12214128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	529	Open in IMG/M
3300010321\|Ga0134067_10274205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BRP22	643	Open in IMG/M
3300010325\|Ga0134064_10288224	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300010326\|Ga0134065_10215863	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300010358\|Ga0126370_11090177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	735	Open in IMG/M
3300010359\|Ga0126376_13219761	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300010360\|Ga0126372_12639086	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300010360\|Ga0126372_12808832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	539	Open in IMG/M
3300010360\|Ga0126372_12961448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300010361\|Ga0126378_12925702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300010362\|Ga0126377_11073424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	873	Open in IMG/M
3300010366\|Ga0126379_11891917	All Organisms → cellular organisms → Bacteria → Proteobacteria	700	Open in IMG/M
3300010366\|Ga0126379_12166047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300010366\|Ga0126379_13171521	Not Available	550	Open in IMG/M
3300010366\|Ga0126379_13884333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300010376\|Ga0126381_103172709	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300010376\|Ga0126381_105051762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300011119\|Ga0105246_11490902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	635	Open in IMG/M
3300012189\|Ga0137388_11802628	Not Available	544	Open in IMG/M
3300012202\|Ga0137363_10330892	All Organisms → cellular organisms → Bacteria → Proteobacteria	1257	Open in IMG/M
3300012212\|Ga0150985_117729194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300012355\|Ga0137369_10733393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300012361\|Ga0137360_10494252	All Organisms → cellular organisms → Bacteria → Proteobacteria	1041	Open in IMG/M
3300012361\|Ga0137360_11047449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300012362\|Ga0137361_11870969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300012683\|Ga0137398_11140242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300012927\|Ga0137416_10578660	Not Available	976	Open in IMG/M
3300012948\|Ga0126375_10733606	All Organisms → cellular organisms → Bacteria → Proteobacteria	773	Open in IMG/M
3300012987\|Ga0164307_10005288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6011	Open in IMG/M
3300013500\|Ga0120195_1008086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300014325\|Ga0163163_11194038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300014325\|Ga0163163_12688502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300014969\|Ga0157376_11829574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	644	Open in IMG/M
3300015372\|Ga0132256_100272169	All Organisms → cellular organisms → Bacteria	1769	Open in IMG/M
3300015372\|Ga0132256_103473492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300015373\|Ga0132257_100691645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1266	Open in IMG/M
3300016270\|Ga0182036_10669323	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300016294\|Ga0182041_10707915	All Organisms → cellular organisms → Bacteria → Proteobacteria	893	Open in IMG/M
3300016319\|Ga0182033_11404890	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300016371\|Ga0182034_11813467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300017997\|Ga0184610_1098499	All Organisms → cellular organisms → Bacteria → Proteobacteria	925	Open in IMG/M
3300018468\|Ga0066662_10252728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1442	Open in IMG/M
3300018476\|Ga0190274_10216783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1701	Open in IMG/M
3300020579\|Ga0210407_10475305	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300021082\|Ga0210380_10364782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	660	Open in IMG/M
3300021082\|Ga0210380_10521277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300021168\|Ga0210406_10535716	All Organisms → cellular organisms → Bacteria → Proteobacteria	922	Open in IMG/M
3300021178\|Ga0210408_10792681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300021361\|Ga0213872_10081657	All Organisms → cellular organisms → Bacteria → Proteobacteria	1452	Open in IMG/M
3300021405\|Ga0210387_11852958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300021478\|Ga0210402_10506604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1121	Open in IMG/M
3300024055\|Ga0247794_10218443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	620	Open in IMG/M
3300025919\|Ga0207657_11228312	All Organisms → cellular organisms → Bacteria → Proteobacteria	569	Open in IMG/M
3300025935\|Ga0207709_11041261	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300026075\|Ga0207708_11454750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300026075\|Ga0207708_11799802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300026075\|Ga0207708_11813376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300026304\|Ga0209240_1052780	All Organisms → cellular organisms → Bacteria → Proteobacteria	1530	Open in IMG/M
3300026355\|Ga0257149_1040131	All Organisms → cellular organisms → Bacteria → Proteobacteria	668	Open in IMG/M
3300027381\|Ga0208983_1101534	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300027646\|Ga0209466_1095003	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300027862\|Ga0209701_10059951	All Organisms → cellular organisms → Bacteria → Proteobacteria	2426	Open in IMG/M
3300027875\|Ga0209283_10870133	Not Available	548	Open in IMG/M
3300028536\|Ga0137415_10484549	Not Available	1044	Open in IMG/M
3300028589\|Ga0247818_10588768	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300028720\|Ga0307317_10135462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 32-66-8	824	Open in IMG/M
3300028755\|Ga0307316_10051464	All Organisms → cellular organisms → Bacteria	1384	Open in IMG/M
3300028784\|Ga0307282_10159134	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300028790\|Ga0307283_10039902	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300028807\|Ga0307305_10116637	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300028824\|Ga0307310_10151761	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300028876\|Ga0307286_10082926	Not Available	1114	Open in IMG/M
3300028878\|Ga0307278_10460936	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300029636\|Ga0222749_10178360	All Organisms → cellular organisms → Bacteria → Proteobacteria	1050	Open in IMG/M
3300031093\|Ga0308197_10304811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	589	Open in IMG/M
3300031170\|Ga0307498_10078825	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300031474\|Ga0170818_110906085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1384	Open in IMG/M
3300031545\|Ga0318541_10731113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	552	Open in IMG/M
3300031561\|Ga0318528_10571668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	606	Open in IMG/M
3300031561\|Ga0318528_10634349	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300031573\|Ga0310915_11018027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300031679\|Ga0318561_10473423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	689	Open in IMG/M
3300031679\|Ga0318561_10655922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	577	Open in IMG/M
3300031680\|Ga0318574_10504953	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300031680\|Ga0318574_10529700	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300031713\|Ga0318496_10162754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1220	Open in IMG/M
3300031763\|Ga0318537_10306591	Not Available	587	Open in IMG/M
3300031768\|Ga0318509_10701797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300031769\|Ga0318526_10094639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1188	Open in IMG/M
3300031771\|Ga0318546_11308918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031780\|Ga0318508_1003669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3052	Open in IMG/M
3300031792\|Ga0318529_10332381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	707	Open in IMG/M
3300031794\|Ga0318503_10262546	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300031796\|Ga0318576_10352485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300031796\|Ga0318576_10468872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	594	Open in IMG/M
3300031797\|Ga0318550_10604264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300031805\|Ga0318497_10100102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1554	Open in IMG/M
3300031805\|Ga0318497_10116191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1445	Open in IMG/M
3300031819\|Ga0318568_10982282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300031879\|Ga0306919_10357961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1115	Open in IMG/M
3300031879\|Ga0306919_11466489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031894\|Ga0318522_10006969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3251	Open in IMG/M
3300031896\|Ga0318551_10451182	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300031896\|Ga0318551_10763711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300031896\|Ga0318551_10816058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300031942\|Ga0310916_10231115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1554	Open in IMG/M
3300032000\|Ga0310903_10068866	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300032035\|Ga0310911_10279061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	959	Open in IMG/M
3300032041\|Ga0318549_10513800	Not Available	538	Open in IMG/M
3300032043\|Ga0318556_10039749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2233	Open in IMG/M
3300032094\|Ga0318540_10057233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1764	Open in IMG/M
3300032094\|Ga0318540_10214518	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300032163\|Ga0315281_11928729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300032174\|Ga0307470_11834778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300032180\|Ga0307471_100113774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2499	Open in IMG/M
3300032261\|Ga0306920_103864746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300033289\|Ga0310914_10230760	All Organisms → cellular organisms → Bacteria → Proteobacteria	1659	Open in IMG/M
3300033551\|Ga0247830_10614633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	861	Open in IMG/M
3300034149\|Ga0364929_0079056	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.28%
Host-Associated	Host-Associated	14.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.82%
Plants	Host-Associated → Plants	14.72%
Aquatic	Environmental → Aquatic	2.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.07%
Freshwater	Environmental → Aquatic → Freshwater	1.84%
Roots	Host-Associated → Plants → Roots	1.23%
Sediment	Environmental → Aquatic → Sediment	0.61%
Floodplain	Environmental → Terrestrial → Floodplain	0.61%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.17%
Loam	Environmental → Terrestrial → Soil → Loam	11.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.84%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.23%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.23%
Lake	Environmental → Aquatic → Freshwater → Lake	0.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.61%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.61%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.13%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.84%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.23%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.23%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.61%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.61%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.07%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.84%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.23%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.23%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.23%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.61%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.61%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.61%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.61%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.61%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.61%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300002074	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1	Host-Associated	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013500	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T4.rep2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_06689340	2070309004	Green-Waste Compost	PLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
AF_2010_repII_A1DRAFT_101558332	3300000597	Forest Soil	SVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
AF_2010_repII_A1DRAFT_101573961	3300000597	Forest Soil	AMQDLPAGVTRDVPPVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP*
AP72_2010_repI_A10DRAFT_10406132	3300000651	Forest Soil	MQDLPASVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
AF_2010_repII_A001DRAFT_100947052	3300000793	Forest Soil	EIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP*
AP72_2010_repI_A100DRAFT_10639573	3300000837	Forest Soil	AGVPMQDLPAAVTRDIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP*
JGI24748J21848_10144531	3300002074	Corn, Switchgrass And Miscanthus Rhizosphere	DVPLVEGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP*
Ga0066823_100743251	3300005163	Soil	VTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP*
Ga0070676_103044851	3300005328	Miscanthus Rhizosphere	LHDLPAGVTRDVPLVEGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP*
Ga0066388_1011848943	3300005332	Tropical Forest Soil	PLRDLPVSVIRQVPLVEGHQFVKFDDRILVVNPASRIVVAMIPRYKLLQ*
Ga0066388_1071436221	3300005332	Tropical Forest Soil	GVTREIPLVGGHKFVKFDDRIVVVDPRNRVVVAMIPRYKLLP*
Ga0070671_1003267902	3300005355	Switchgrass Rhizosphere	VPLHDLPAGVTRDVPLVEGHKFVKFDDRILVVDSASRVVVAMIPRYKLLP*
Ga0070673_1010423021	3300005364	Switchgrass Rhizosphere	PLHDLPAGVTRDVPLVEGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP*
Ga0070709_113025871	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GVPLQDLPPGIAEEIPVVRDHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP*
Ga0070696_1005710291	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VPLHDLPAGVTRDVPLVEGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP*
Ga0070693_1016753422	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	DLPAGVTRDVPLVEGHKFVKFDDRILVVDSASRVVVAMIPRYKLLP*
Ga0066707_102308771	3300005556	Soil	GVPMQDLPAAVTRDIPLVQGHKFVKFDDRIVVIEPASRLVVAMIPRYKLLP*
Ga0066691_106706721	3300005586	Soil	MQDLPASLTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP*
Ga0070761_110511141	3300005591	Soil	MQDLPAEVSQDVPLVQGHKFVKFDDRILIVHPSNRLVVAMIPRYKL
Ga0070702_1016994961	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	DIIREIPLIRGHKFVKFDDRILVVSSTSRLVVAMIPRYKLLP*
Ga0066905_1014384132	3300005713	Tropical Forest Soil	VPLQDLPAGMAQEVPQVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP*
Ga0066905_1022750411	3300005713	Tropical Forest Soil	LPASVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0068866_107537352	3300005718	Miscanthus Rhizosphere	DLPAGVTRDVPLVEGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP*
Ga0066903_1030885171	3300005764	Tropical Forest Soil	TREIPLVRGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0066903_1056131292	3300005764	Tropical Forest Soil	REIPLVQGHKFVKFDDRILVVNPASRLVVAMIPRYKLLP*
Ga0066903_1089464612	3300005764	Tropical Forest Soil	PLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP*
Ga0081455_105743631	3300005937	Tabebuia Heterophylla Rhizosphere	PLVRGHKFVKFDDRIVVVDPKSRVVVAMMPRYKLLP*
Ga0066651_107024141	3300006031	Soil	MAQEIPQVEGHKFVKFEDRIVVVNPRSRVVAAMIPRYKPLP*
Ga0066696_101019873	3300006032	Soil	VSRDIPLVQGHKFAKFDDRIVLVDPATRVVVAMIPRYKLLLQ*
Ga0066656_105160681	3300006034	Soil	VQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0075417_104869481	3300006049	Populus Rhizosphere	PADVPMQDLPAGLTREIPLVHGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0070715_110382712	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	DLPSGITRDIPAVRGHKFVKFDDRILVVSSEGRLVVAMIPRYKLLP*
Ga0066660_115784373	3300006800	Soil	LPSGVPLHDLPTGMAQEIPQVEGHKFVKFEDRIVVVNPRSRVVVAMIPRYKLLP*
Ga0075431_1009762863	3300006847	Populus Rhizosphere	PAGVTQDIPLAQGHKFVKFDDRILIVNPSSRLVVALIPRYKLVP*
Ga0075436_1003571441	3300006914	Populus Rhizosphere	MQDLPAAVARDVPPVQGHKFAKFDDRIVVIDPASRLVVAMIPRYRLLP*
Ga0075435_1018058181	3300007076	Populus Rhizosphere	ADDIEMQDLPLSVVRRLPQVEGYKFAKFDDRIVVVNPASRLVVAMIPRYKLMP*
Ga0099827_103322834	3300009090	Vadose Zone Soil	VVREIPQVRGHKFVKFDDRILVVDPASRLVVAMIPRYKLMD*
Ga0066709_1001804842	3300009137	Grasslands Soil	PQVEGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP*
Ga0105243_108385632	3300009148	Miscanthus Rhizosphere	PAGVTRDVPLVEGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP*
Ga0111538_110477071	3300009156	Populus Rhizosphere	PLVSGHKFVKFDDRILVISATSRLVVAMIPRYKLLQ*
Ga0105249_132636532	3300009553	Switchgrass Rhizosphere	DVPLHDLPAGVTRDVPLVEGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP*
Ga0126384_109155022	3300010046	Tropical Forest Soil	VTREIPLVRGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0126382_122141281	3300010047	Tropical Forest Soil	EVPMQDLPASVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0134067_102742051	3300010321	Grasslands Soil	GMAQEIPQVEGHKFVKFEDRIVVVDPRSRVVVAMIPRYKLLP*
Ga0134064_102882241	3300010325	Grasslands Soil	TRDIPLVQGHKFVKFDDRIVVIEPASRLVVAMIPRYKLLP*
Ga0134065_102158632	3300010326	Grasslands Soil	AVTRDIPLVQGHKFVKFDDRIVVIEPASRLVVAMIPRYKLLP*
Ga0126370_110901771	3300010358	Tropical Forest Soil	DLPASVTREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP*
Ga0126376_132197611	3300010359	Tropical Forest Soil	PLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0126372_126390862	3300010360	Tropical Forest Soil	PQVRGHKFVKFDDRILVIDPASRLVVAMIPRYKLMD*
Ga0126372_128088322	3300010360	Tropical Forest Soil	TREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP*
Ga0126372_129614482	3300010360	Tropical Forest Soil	MAQEIPQVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP*
Ga0126378_129257022	3300010361	Tropical Forest Soil	QEIPQVRGHKFVKFDDRVVVVDPKSRVVVAMIARYKLLP*
Ga0126377_110734242	3300010362	Tropical Forest Soil	VALQDLPAGVTREIPLVDGHKFVKFDDRIVVVEPASRVVVAMIPRYRLLP*
Ga0126379_118919172	3300010366	Tropical Forest Soil	MQDLPASVTREIPLVQGHKFVKFDDRILVVNPASRLVVAMIPRYKLLP*
Ga0126379_121660472	3300010366	Tropical Forest Soil	RDIPPVQGHKFVKFDDRIVVVDPASRLVVAMIPRYRLLP*
Ga0126379_131715211	3300010366	Tropical Forest Soil	LPGEVPMQDLPTSVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0126379_138843331	3300010366	Tropical Forest Soil	ADALPQGVPMQDLPPGVTREIPLARGHKFVKFDDRIVVVDPLSCLVVAMIPRYKLLP*
Ga0126381_1031727092	3300010376	Tropical Forest Soil	EIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP*
Ga0126381_1050517622	3300010376	Tropical Forest Soil	LPASVTREIPLVRGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0105246_114909021	3300011119	Miscanthus Rhizosphere	RDIPLVEGHQFAKFDDRILVVNSSSRVVVAMIPRYKLLP*
Ga0137388_118026282	3300012189	Vadose Zone Soil	LQDLPMSVTRKLPLIKDYKFVKFDDRILVVNPASRVVVAMIPRYKLLQ*
Ga0137363_103308921	3300012202	Vadose Zone Soil	PAGVPMQDLPAAVTRDIPLVQGHKFVKFDDRIVVIDPASRLVVAMIPRYRLLP*
Ga0150985_1177291941	3300012212	Avena Fatua Rhizosphere	TQDLPDDIIREIPLIRGHKFVKFDDRILVVSSSRLVVAMIPRYKLLP*
Ga0137369_107333932	3300012355	Vadose Zone Soil	SGVPLQDLPFGIAQEIPLVRDHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP*
Ga0137360_104942521	3300012361	Vadose Zone Soil	ALPGEVPMQDLPVSVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0137360_110474492	3300012361	Vadose Zone Soil	PAAVTRDIPLVQGHKFVKFDDRIVVIDPASRLVVAMIPRYKLLP*
Ga0137361_118709691	3300012362	Vadose Zone Soil	TREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0137398_111402421	3300012683	Vadose Zone Soil	TRDVPLVRGHQFAKFDDRILVVDSASRVVVAMIPRYKLLP*
Ga0137416_105786602	3300012927	Vadose Zone Soil	ADALPSEVLLQDMPMSVTRKLPLIKDYKFVKFDDRILVVNPASRVVVAMIPRYKLLQ*
Ga0126375_107336062	3300012948	Tropical Forest Soil	QDLPAGVTRDVPPVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP*
Ga0164307_100052887	3300012987	Soil	PLVEGHRFAKFEDRILVVNSASRLVVAMIPRYKLLP*
Ga0120195_10080862	3300013500	Terrestrial	MQDLPAGLAREIPLVHGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP*
Ga0163163_111940381	3300014325	Switchgrass Rhizosphere	DIIHEIPMVRGHRFVKFDDRILVVSSTSRLVVAMIPRYKLLP*
Ga0163163_126885021	3300014325	Switchgrass Rhizosphere	IPLARGHKFVKFDDRILVVSSTSRLVVAMIPRYKLLP*
Ga0157376_118295741	3300014969	Miscanthus Rhizosphere	RLPQVEGYKFAKFDDRIVVVNPASRLVVAMIPRYRLMP*
Ga0132256_1002721691	3300015372	Arabidopsis Rhizosphere	DVPLVRGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP*
Ga0132256_1034734922	3300015372	Arabidopsis Rhizosphere	AGIVREIPRVRGHKFVKFDDRIVVVDPKSRVVVAMMPRYKLLP*
Ga0132257_1006916451	3300015373	Arabidopsis Rhizosphere	LPAGIVREIPLVRGHKFVKFDDRIVVVDPKSRVVVALMPRYKLLP*
Ga0182036_106693231	3300016270	Soil	DLPASVTREIPLVQGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0182041_107079152	3300016294	Soil	LVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0182033_114048901	3300016319	Soil	PLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0182034_118134671	3300016371	Soil	EVPQVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0184610_10984991	3300017997	Groundwater Sediment	LPAGIVREIPLVRGHKFVKFDDRIVVVDPKSRVVVAMMPRYKLLP
Ga0066662_102527281	3300018468	Grasslands Soil	SRGIRLVQGHKFVKFDDRIVLVDPATRLVVAMIPRYKLLQ
Ga0190274_102167835	3300018476	Soil	NDIIREIPLVRGHKFVKFDDRILVVSSASRLVIAMIPRYKLLP
Ga0210407_104753051	3300020579	Soil	PMQDLPAAVARDVPLVQGHKFVKFDDRIVVVDPASRLVVAMIPRYRLLP
Ga0210380_103647822	3300021082	Groundwater Sediment	PLPEEVPMQELPTDIIDEIPLVRGHKFVKFDDRILVVSSTSRLVVAMIPRYKLLP
Ga0210380_105212771	3300021082	Groundwater Sediment	QGEIPMQDLPVRITEDIPMVQGHKFVKFEDRILIVNPSSQLVVAMIPRYRLLP
Ga0210406_105357162	3300021168	Soil	PAAVARDVPLVQGHKFVKFDDRIVVVDPASRLVVAMIPRYRLLP
Ga0210408_107926811	3300021178	Soil	ANVTADIPLVRGHKFMKLEDRILLVEPASRVVVAMIPRYKLLP
Ga0213872_100816571	3300021361	Rhizosphere	EIPLVRGHKFVKFDDRIVVVEPASRVVVAMIPRYKLLP
Ga0210387_118529581	3300021405	Soil	AVARDVPLVQGHKFVKFDDRIVVVDPASRLVVAMIPRYRLLP
Ga0210402_105066042	3300021478	Soil	MQDLPAAVARDVPLVQGHKFVKFDDRIVVVDPASRLVVAMIPRYRLLP
Ga0247794_102184432	3300024055	Soil	LHDLPAGVTRDVPLVEGHKFVKFDDRILVVDSASRVVVAMIPRYKLLP
Ga0207657_112283122	3300025919	Corn Rhizosphere	TRDVPLVEGHKFVKFDDRILVVDSASRVVVAMIPRYKLLP
Ga0207709_110412611	3300025935	Miscanthus Rhizosphere	DLPAGVTRDVPLVEGHQFAKFDDRILVVNAESRVVVAMIPRYKLLP
Ga0207708_114547501	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	SAVPLQDLPAGIAREIPPVQGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0207708_117998023	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	NDIIREIPPVRGHKFVKFDDRILVVSSASRLVIAMIPRYKLLP
Ga0207708_118133762	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	IIHEIPLVRGHKFVKFDDRILVVSSASRLVVAMIPRYKLLP
Ga0209240_10527801	3300026304	Grasslands Soil	GVPLQDLPASLTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0257149_10401312	3300026355	Soil	VPLQDLPASLTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0208983_11015341	3300027381	Forest Soil	DVPLHDLPAGVTRDVPLVRGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP
Ga0209466_10950032	3300027646	Tropical Forest Soil	TSVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0209701_100599511	3300027862	Vadose Zone Soil	VAMQDLPAGVVREIPQVRGHKFVKFDDRILVVDPASRLVVAMIPRYKLMD
Ga0209283_108701332	3300027875	Vadose Zone Soil	GVVREIPQVRGHKFVKFDDRILVVDPASRLVVAMIPRYKLMD
Ga0137415_104845491	3300028536	Vadose Zone Soil	ADALPSEVLLQDMPMSVTRKLPLIKDYKFVKFDDRILVVNPASRVVVAMIPRYKLLQ
Ga0247818_105887682	3300028589	Soil	SRVTLVEGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP
Ga0307317_101354621	3300028720	Soil	HEIPLVRGHKFVKFDDRILVVSSTSRLVVAMIPRYKLLP
Ga0307316_100514643	3300028755	Soil	TRDVPLVEGHQFAKFDDRILVVNSTSRVVVAMIPRYKLLP
Ga0307282_101591341	3300028784	Soil	VPLVRGHQFAKFDDRILVVNSASRVVVAMIPRYKILP
Ga0307283_100399021	3300028790	Soil	PAGVTRDVPLVEGHKFAKFDDRILVVNSTSRVVVAMIPRYKLLP
Ga0307305_101166371	3300028807	Soil	VPLHDLPAGVTRDVPLVRGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP
Ga0307310_101517613	3300028824	Soil	TRDVPLVRGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP
Ga0307286_100829261	3300028876	Soil	PTDIIHEIPLVRGHKFVKFDDRILVVSSTSRLVVAMIPRYKLLP
Ga0307278_104609362	3300028878	Soil	VPMQDLPAGLAREIPLMHGHKFVKFDDRIVAVNPASRLVVAMIPRYKLLP
Ga0222749_101783602	3300029636	Soil	ASVTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0308197_103048111	3300031093	Soil	REIPLVRGHKFVKFDDRILVVSSASRLVVAMIPRYKLLP
Ga0307498_100788253	3300031170	Soil	VTRDVPLVRGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP
Ga0170818_1109060851	3300031474	Forest Soil	LIRGHKFVKFDDRILVVSSTSRLVVAMIPRYKLLP
Ga0318541_107311131	3300031545	Soil	DLPATVTREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP
Ga0318528_105716682	3300031561	Soil	MQDLPATVTREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP
Ga0318528_106343491	3300031561	Soil	VTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0310915_110180272	3300031573	Soil	EIPQVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0318561_104734232	3300031679	Soil	SGVAMQDLPATVTREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP
Ga0318561_106559221	3300031679	Soil	LQDLPAGMAQEVPQVLGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0318574_105049531	3300031680	Soil	SVTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0318574_105297002	3300031680	Soil	TREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0318496_101627541	3300031713	Soil	GVAMQDLPASVTREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP
Ga0318537_103065912	3300031763	Soil	DLPASVTREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP
Ga0318509_107017972	3300031768	Soil	MQDLPASVTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0318526_100946391	3300031769	Soil	LPASVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0318546_113089181	3300031771	Soil	VPLHDLPAGIVQAIPLVQGHKFVKFDDQIVVVDPKSRVVVAMIPRYKLLP
Ga0318508_10036692	3300031780	Soil	GMAQEVPQVLGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0318529_103323812	3300031792	Soil	VPMQDLPASVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0318503_102625461	3300031794	Soil	VAMQDLPAGVTRDVPPVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0318576_103524851	3300031796	Soil	MQDLPASVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0318576_104688721	3300031796	Soil	AMQDLPATVTREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP
Ga0318550_106042642	3300031797	Soil	AQEIPQVEGHTFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0318497_101001021	3300031805	Soil	AEVAMQDLPAGVTRDVPPVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0318497_101161912	3300031805	Soil	SSEVPMQDLPASVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0318568_109822822	3300031819	Soil	GMAQEVPQVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0306919_103579612	3300031879	Soil	EIPQVEGHTFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0306919_114664892	3300031879	Soil	AQEVPQVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0318522_100069691	3300031894	Soil	SGVAMQDLPASVTREIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0318551_104511821	3300031896	Soil	TRDVPPVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0318551_107637111	3300031896	Soil	AGMAQEVPQVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0318551_108160581	3300031896	Soil	EIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0310916_102311151	3300031942	Soil	DVPPVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0310910_104012553	3300031946	Soil	IPLLRGHKFMKLEDRILLVEPATRAVVAMFPRYKLLP
Ga0310903_100688661	3300032000	Soil	VTRDVPLVEGHQFAKFDDRILVVNAASRVVVAMIPRYKLLP
Ga0310911_102790612	3300032035	Soil	PQVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0318549_105138002	3300032041	Soil	AMQDLPASVTREIPLVRGHKFVKFDDRIVVVDPASRVVVAMIPRYKLLP
Ga0318549_105582931	3300032041	Soil	LLSAYKFMKLEDRILLIEPAARVVVAMIPRYKLLP
Ga0318556_100397493	3300032043	Soil	RVTLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0318540_100572331	3300032094	Soil	EIPLVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0318540_102145182	3300032094	Soil	VTRDVPPVRGHKFVKFDDRIVVVDPASRLVVAMIPRYKLLP
Ga0315281_119287291	3300032163	Sediment	IREVPLVNDHKFVKFDDRILVVDPASRLVVAMIPRYKLLP
Ga0307470_118347781	3300032174	Hardwood Forest Soil	VPLQDLPAGIVREIPLVRGHKFVKFDDRIVVVDPKSRVVVAMMPRYKLLP
Ga0307471_1001137741	3300032180	Hardwood Forest Soil	TRDIPLVQGHKFVKFDDRIVVVDPASRLIVAMIPRYKLLP
Ga0306920_1038647462	3300032261	Soil	QVRGHKFVKFDDRIVVVDPKSRVVVAMIPRYKLLP
Ga0310914_102307603	3300033289	Soil	DLPASVTREIPLVQGHKFVKFDDRIVVVNPASRLVVAMIPRYKLLP
Ga0247830_106146331	3300033551	Soil	REVPLHDLPAGVTRDVPLVEGHKFVKFDDRILVVDSASRVVVAMIPRYKLLP
Ga0364929_0079056_886_1020	3300034149	Sediment	PAGVTRDVPLVRGHQFAKFDDRILVVNSASRVVVAMIPRYKLLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F039833

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences