Metagenome / Metatranscriptome Family F038581

Basic Information
Family ID	F038581
Family Type	Metagenome / Metatranscriptome
Number of Sequences	165
Average Sequence Length	46 residues
Representative Sequence	MSRRSSRRGRPYQPLPQRRVNWGARLLVVFVAFILVAGFAILTFAR
Number of Associated Samples	130
Number of Associated Scaffolds	165

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.48 %
% of genes near scaffold ends (potentially truncated)	19.39 %
% of genes from short scaffolds (< 2000 bps)	82.42 %
Associated GOLD sequencing projects	121
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (99.394 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (21.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.758 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1Perma_A_C_03421640 2A5_c1_00998800 3A5_c1_00537900 4JGI10216J12902_1063583842 5A3PFW1_100967351 6A3PFW1_101374591 7C687J26616_100123676 8C687J26615_101016023 9C687J26623_100297584 10C687J29651_102832992 11C687J35164_101733232 12JGI25406J46586_100931782 13JGI26129J50193_10184761 14Ga0055471_100603802 15Ga0055468_102579852 16Ga0055472_100867571 17Ga0055477_102039612 18Ga0055477_103504832 19Ga0055465_102471931 20Ga0055440_102128762 21Ga0062593_1003564583 22Ga0062593_1005413902 23Ga0062593_1022435292 24Ga0062589_1021182981 25Ga0062590_1016576542 26Ga0063356_1047345052 27Ga0063356_1048614321 28Ga0062595_1000693172 29Ga0062595_1012818782 30Ga0062594_1013284872 31Ga0066683_105592112 32Ga0065705_102204413 33Ga0065705_106492301 34Ga0070705_1000032584 35Ga0070705_1009369612 36Ga0070694_1008331661 37Ga0070708_1000922745 38Ga0070708_1004023952 39Ga0070708_1007310312 40Ga0070706_1017802131 41Ga0070698_1000247325 42Ga0066707_103040932 43Ga0066704_101278142 44Ga0066698_100748244 45Ga0066691_104808632 46Ga0075293_10697372 47Ga0075300_10464592 48Ga0075297_10310082 49Ga0075295_10126702 50Ga0075286_10041991 51Ga0075425_1000102524 52Ga0079215_103601151 53Ga0104326_1182953 54Ga0066710_1003122295 55Ga0066709_1007739272 56Ga0075423_103660992 57Ga0075423_115793402 58Ga0105100_102679612 59Ga0105249_134542052 60Ga0126312_113817482 61Ga0136847_111588731 62Ga0120118_11041242 63Ga0120159_10561991 64Ga0120139_11392902 65Ga0137374_101694962 66Ga0137369_101732233 67Ga0137375_103053331 68Ga0157297_103078672 69Ga0153915_1000114823 70Ga0153915_104275472 71Ga0120150_10600972 72Ga0120158_104203062 73Ga0167629_10258491 74Ga0180081_10419281 75Ga0132258_101234095 76Ga0132258_109811103 77Ga0132257_1003842071 78Ga0132255_1003296381 79Ga0134083_100796923 80Ga0184610_10772183 81Ga0184610_11256171 82Ga0184638_12068802 83Ga0184638_12288152 84Ga0184626_101722962 85Ga0184626_104084482 86Ga0184637_102047951 87Ga0184637_102255951 88Ga0184618_100007318 89Ga0184618_100304744 90Ga0184632_100036459 91Ga0184609_105777801 92Ga0184639_103951882 93Ga0190272_131986901 94Ga0190270_129384052 95Ga0184643_13844942 96Ga0193751_10006419 97Ga0193745_10729692 98Ga0210382_100566432 99Ga0193719_103253452 100Ga0224500_100217952 101Ga0224505_100503234 102Ga0209001_10726122 103Ga0209619_104458591 104Ga0209109_1000409910 105Ga0209109_100165566 106Ga0209109_103317442 107Ga0209519_107276801 108Ga0209341_100818443 109Ga0209341_102572463 110Ga0209341_107587072 111Ga0210132_10774812 112Ga0210113_11131702 113Ga0210144_11868942 114Ga0207653_104205482 115Ga0207707_111867502 116Ga0207646_100265517 117Ga0207646_115286782 118Ga0207690_117652451 119Ga0207648_103721123 120Ga0207648_116891181 121Ga0256867_100250693 122Ga0209968_10839972 123Ga0214469_10445302 124Ga0214468_10309502 125Ga0256866_10587312 126Ga0307295_100759272 127Ga0307298_102021952 128Ga0307319_101330381 129Ga0307320_101698262 130Ga0307282_100999893 131Ga0307504_100012466 132Ga0307299_100618173 133Ga0307305_104355642 134Ga0307302_100676403 135Ga0307296_101949073 136Ga0307310_103447062 137Ga0307312_102169261 138Ga0307312_103306371 139Ga0307312_103658942 140Ga0307312_111716911 141Ga0307278_103159001 142Ga0307308_105689971 143Ga0299907_100733784 144Ga0299907_105240712 145Ga0299907_109714872 146Ga0268386_107971622 147Ga0299913_100090314 148Ga0299913_102885391 149Ga0299913_107789802 150Ga0310813_110834522 151Ga0307468_1024336482 152Ga0214473_110379801 153Ga0326597_113223052 154Ga0326597_120147852 155Ga0315540_102706511 156Ga0310890_113277342 157Ga0315281_1000559819 158Ga0315281_100483948 159Ga0214472_1000744017 160Ga0214471_1000136217 161Ga0326726_103560272 162Ga0326726_112344292 163Ga0364926_149869_294_434 164Ga0364930_0188474_165_305 165Ga0364936_107331_431_553
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1Perma_A_C_03421640 2JGI10216J12902_1063583842 3A3PFW1_100967351 4JGI25406J46586_100931782 5Ga0055471_100603802 6Ga0055468_102579852 7Ga0055477_102039612 8Ga0062595_1012818782 9Ga0065705_102204413 10Ga0070708_1004023952 11Ga0066691_104808632 12Ga0075286_10041991 13Ga0075425_1000102524 14Ga0105100_102679612 15Ga0120139_11392902 16Ga0132255_1003296381 17Ga0184638_12288152 18Ga0256867_100250693 19Ga0209968_10839972 20Ga0326726_112344292
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46 1C687J35164_101733232 2Perma_A_C_03421640 3A5_c1_00537900 4A3PFW1_101374591 5JGI25406J46586_100931782 6JGI26129J50193_10184761 7Ga0055471_100603802 8Ga0055468_102579852 9Ga0055472_100867571 10Ga0055477_102039612 11Ga0055477_103504832 12Ga0055465_102471931 13Ga0062593_1005413902 14Ga0070708_1000922745 15Ga0070708_1004023952 16Ga0066707_103040932 17Ga0075293_10697372 18Ga0075297_10310082 19Ga0075286_10041991 20Ga0079215_103601151 21Ga0066709_1007739272 22Ga0075423_103660992 23Ga0105100_102679612 24Ga0126312_113817482 25Ga0120139_11392902 26Ga0137375_103053331 27Ga0132257_1003842071 28Ga0132255_1003296381 29Ga0184638_12068802 30Ga0184638_12288152 31Ga0184626_101722962 32Ga0184626_104084482 33Ga0184637_102047951 34Ga0184618_100007318 35Ga0184632_100036459 36Ga0184639_103951882 37Ga0190272_131986901 38Ga0193751_10006419 39Ga0193719_103253452 40Ga0209109_103317442 41Ga0209341_100818443 42Ga0210132_10774812 43Ga0207646_115286782 44Ga0256867_100250693 45Ga0214468_10309502 46Ga0307504_100012466 47Ga0307302_100676403 48Ga0307310_103447062 49Ga0299907_109714872 50Ga0310813_110834522 51Ga0326597_113223052 52Ga0310890_113277342 53Ga0315281_1000559819 54Ga0326726_112344292 55Ga0364936_107331_431_553
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.08% β-sheet: 0.00% Coil/Unstructured: 68.92%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 165 Family Scaffolds
PF00903	Glyoxalase	13.94
PF13561	adh_short_C2	7.88
PF05163	DinB	7.88
PF03641	Lysine_decarbox	4.24
PF12681	Glyoxalase_2	1.82
PF04209	HgmA_C	1.21
PF01035	DNA_binding_1	1.21
PF00300	His_Phos_1	0.61
PF01425	Amidase	0.61
PF07179	SseB	0.61

COG ID	Name	Functional Category	% Frequency in 165 Family Scaffolds
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	7.88
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	4.24
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	1.21
COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	Replication, recombination and repair [L]	1.21
COG3508	Homogentisate 1,2-dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.21
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	1.21
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.61
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.61
COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	Replication, recombination and repair [L]	0.61

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.39 %
Unclassified	root	N/A	0.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.39 %
Unclassified	root	N/A	0.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.39 %
Unclassified	root	N/A	0.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.61 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.61 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	72.73 %
Unclassified	root	N/A	0.61 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.61 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	72.12 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.61 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.61 %
Unclassified	root	N/A	0.61 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.61 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.61 %
Unclassified	root	N/A	0.61 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	71.52 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.61 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.61 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	71.52 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.61 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.61 %
Unclassified	root	N/A	0.61 %

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig187797	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
2124908044\|A5_c1_ConsensusfromContig63577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	637	Open in IMG/M
2124908044\|A5_c1_ConsensusfromContig68354	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300000956\|JGI10216J12902_106358384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2292	Open in IMG/M
3300001535\|A3PFW1_10096735	All Organisms → cellular organisms → Bacteria	1879	Open in IMG/M
3300001535\|A3PFW1_10137459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	814	Open in IMG/M
3300002120\|C687J26616_10012367	All Organisms → cellular organisms → Bacteria	3333	Open in IMG/M
3300002121\|C687J26615_10101602	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300002122\|C687J26623_10029758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1453	Open in IMG/M
3300002407\|C687J29651_10283299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.30%
Host-Associated	Host-Associated	9.70%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	21.21%
Plants	Host-Associated → Plants	9.70%
Terrestrial	Environmental → Terrestrial	69.09%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	1.82%
Freshwater	Environmental → Aquatic → Freshwater	4.85%
Marine	Environmental → Aquatic → Marine	7.88%
Peat	Environmental → Terrestrial → Peat	1.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.03%
Sediment	Environmental → Aquatic → Sediment	8.48%
Soil	Environmental → Terrestrial → Soil	66.06%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.24%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.61%
Lake	Environmental → Aquatic → Freshwater → Lake	1.82%
Loam	Environmental → Terrestrial → Soil → Loam	12.12%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.82%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.82%
Sediment	Environmental → Aquatic → Marine → Sediment	1.21%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.21%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.06%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.03%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.21%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.06%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.48%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	6.06%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.24%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.21%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.21%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.61%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	4.85%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.42%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.42%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.61%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.61%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.21%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.21%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.21%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.21%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	6.06%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.21%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.24%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.03%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.61%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.21%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.21%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.82%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.21%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.61%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300002407	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1	Environmental	Open in IMG/M
3300002503	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M

Showing 1 to 10 of 130 entries

Previous1 2 3 4 5…13Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_03421640	2124908032	Soil	MSRRSSRRGRPYQPLPDHRSNWGAKLVVVFVAFILVAGFAILTFAR
A5_c1_00998800	2124908044	Soil	VSRRSSRRGRPYQPLPDRRSNWGAKLVVIFVALILVAGFAILTFAR
A5_c1_00537900	2124908044	Soil	MSRRSQRRGRPYQPLPERHINWGARLTVVVIAFILVIGFAILAFAR
JGI10216J12902_1063583842	3300000956	Soil	VTRRRQRGRPYQPLPARHVNWGARLLVVFVAFVLVAGFAILTFAR*
A3PFW1_100967351	3300001535	Permafrost	GRPYQPLPARQVNWGARLVIVVVAVVLVAGFAILSFAR*
A3PFW1_101374591	3300001535	Permafrost	MSRRSQRRGRPYQPLPARQVNWGARLVIVFVAFVLVAGFAILSFAR*
C687J26616_100123676	3300002120	Soil	MSRRSSRRGRPYQPLPRRRVNWGARLLVVFVAFILVAGFAILTFAR*
C687J26615_101016023	3300002121	Soil	MSRRSSRRGRPYQPLPVRRVNWVARLVVVFVAFILVAGFAILTFAR*
C687J26623_100297584	3300002122	Soil	MSRRSSRRGRPYQPLPRRRVNWGARLLVVFVAFILVAGFAILTFA
C687J29651_102832992	3300002407	Soil	MSRRSSRRGRPYQPLPRRRVNWGARLLVVFVAFILVAGFAIL
C687J35164_101733232	3300002503	Soil	MSRRSSRRGRPYQPLPQRRVNWGARLLVVFVAFILVAGFAILTFAR*
JGI25406J46586_100931782	3300003203	Tabebuia Heterophylla Rhizosphere	MTRRRRGRPYQPYPVRSVNWGARLIIVAVGFIMIVGFAILTFTH*
JGI26129J50193_10184761	3300003349	Arabidopsis Thaliana Rhizosphere	MSRRSSRKGRPYQPLPVRHTNWGARLVIISVAFILVAGFAILSFSR*
Ga0055471_100603802	3300003987	Natural And Restored Wetlands	MSRRNRKRGRSYQPYPERNVNWGARLMIVAVAFIMVAGIAILTFAR*
Ga0055468_102579852	3300003993	Natural And Restored Wetlands	MSRSRRSGRRGRPYQPYPERRTNWAARLIIVVVAFIMVAGIAVLTFTQ*
Ga0055472_100867571	3300003998	Natural And Restored Wetlands	MSRRSGRKGRPYQPYPERRTNWAARLVIVVVAFIMVAGIAVLTFIR*
Ga0055477_102039612	3300004002	Natural And Restored Wetlands	MSRRNRRGRVYQPLPKRQVNWGARLLIVVIGFVMVAGIAILAFAR*
Ga0055477_103504832	3300004002	Natural And Restored Wetlands	VSRRGNRRGRPYQPYPDRRVNWGARLLIVAIAFVMVAGIAILAFAR*
Ga0055465_102471931	3300004013	Natural And Restored Wetlands	MTRRRGRGRPYQPYPERRTNWGARLLVVFVGFVLIAGFAILTFAR*
Ga0055440_102128762	3300004020	Natural And Restored Wetlands	VSRRSSRRGRPYQPLPPRRTNWGARLVIVFVAFILVAGFAVLTFVK*
Ga0062593_1003564583	3300004114	Soil	MSRRSQRRGRPYQPLPTRRVNWGARLVIISVAFVLVAGFAILSFAR*
Ga0062593_1005413902	3300004114	Soil	LTRRRRGRPYQPYPTRSVNWGARLLIVVIGFIMVLGIAILTFTR*
Ga0062593_1022435292	3300004114	Soil	MSRRSQRRGRPYQPLPERQVNWGARLVIIFVAFVLIAGFAILSFAR*
Ga0062589_1021182981	3300004156	Soil	MSRRSSRKGRPYQPLPVRHTNWGARLVIIFVAFILVAGFAILSFSR*
Ga0062590_1016576542	3300004157	Soil	LTRRRRGRPYQPYPTRSVDWGARLLIVVIGFIMVLGIAILTFTR*
Ga0063356_1047345052	3300004463	Arabidopsis Thaliana Rhizosphere	MSRRSNRRGRPYQPLPTRRVNWGARLVIIFVAFVLVAGFAILSFAR*
Ga0063356_1048614321	3300004463	Arabidopsis Thaliana Rhizosphere	RRRRGRPYQPYPTRSVNWGARLLIVVIGFIMVVGIAILTFTR*
Ga0062595_1000693172	3300004479	Soil	MSRRSPRRGRPYQPLPARSVNWGARLVIVVVAVVLVAGFAILSFAR*
Ga0062595_1012818782	3300004479	Soil	VGPMSRRSQRRGRPYQPLPTRRVNWGARLVIISVAFVLVAGFAILSFAR*
Ga0062594_1013284872	3300005093	Soil	MSRRSQRRGRPYQPLPTRRVNWGARLVIVIVAFVLVAGFAILSFAR*
Ga0066683_105592112	3300005172	Soil	VSRRSPRRGRPYQPLPERRGSWVAKLVVLFVAFILVVGFAILTFSK*
Ga0065705_102204413	3300005294	Switchgrass Rhizosphere	HSRGADDPVPAPPRVGPMSRRSSRKGRPYQPLPVRHTNWGARLVIIFVAFILVAGFAILSFSR*
Ga0065705_106492301	3300005294	Switchgrass Rhizosphere	MSRRSQRRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILTFAR*
Ga0070705_1000032584	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSSRKGRPYQPLPERRVNWGARLVIIFVAFILVAGFAILSFAR*
Ga0070705_1009369612	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSSRRGRPYQPLPERRVNWGARLVIVVVAFILVAGIAVLSFAR*
Ga0070694_1008331661	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	APRVGPMSRRSSRKGRPYQPLPVRHTNWGARLVIIFVAFILVAGFAILSFSR*
Ga0070708_1000922745	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSPRRGRPYQPLPTRTVNWGARLVIVIVAVVLVAGFAILSFAR*
Ga0070708_1004023952	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSRRSTRKGRPYQPLPERRGSWVAKIVVLFVAFILVIGFAILTFAK*
Ga0070708_1007310312	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSPRRGRPYQPLPERRGSWVAKLVVLFVAFILVVGFAVLTFSR*
Ga0070706_1017802131	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSSRKGRPYQPLPVRHTNWGARLVIIFVAFILVAGFAILSFAR*
Ga0070698_1000247325	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSSRRGRPYQPLPERRVNWGARLVIVVVAFILVAGFAILSFAR*
Ga0066707_103040932	3300005556	Soil	VSRRSARRGRPYQPLPERRGNWVAKLVVLFVAFILVVGFAVLTFSR*
Ga0066704_101278142	3300005557	Soil	VSRRSARRGRPYQPLPERRGNWAAKLVVLFVAFILVVGFAVLTFSR*
Ga0066698_100748244	3300005558	Soil	MSRRSPRRGRPYQPLPERRGSWVAKLVVLFVAFILVVGFAILTFSK*
Ga0066691_104808632	3300005586	Soil	RGRPYQPLPERRGNWAAKLVVLFVAFILVVGFAVLTFSR*
Ga0075293_10697372	3300005875	Rice Paddy Soil	VSRRSQRRGRPYQPLPSRRTNWTARLVVVFVAFILVAGFAILTFAR*
Ga0075300_10464592	3300005876	Rice Paddy Soil	RSQRRGRPYQPLPSRRTNWTARLVVVFVAFILVAGFAILTFAR*
Ga0075297_10310082	3300005878	Rice Paddy Soil	MSRRSNRRGRPYQPLPERHVNWGARLTVVLVALVLVIGFAILTFAR*
Ga0075295_10126702	3300005879	Rice Paddy Soil	VSRRSRRRGRPYQPLPSRRTNWTARLVVVFVAFILVAGFAILTFAR*
Ga0075286_10041991	3300005886	Rice Paddy Soil	MSRRSGRRGRPYQPYPERRVNWGARLLVVFVAFVMIASIAILTFVR*
Ga0075425_1000102524	3300006854	Populus Rhizosphere	MTRRSSRRGRPYQPLPEKRSNWGARLLVLLVAVILVGGFAVLTFTH*
Ga0079215_103601151	3300006894	Agricultural Soil	MSRRRRGRPYQPYPTRNVNWGARLLIVLVGFIMVVGIAILTFTR*
Ga0104326_1182953	3300007740	Soil	VSRRSSRRGRPYQPLPDRRSNWGAKLVVIFVALILVAGFAILTFAR*
Ga0066710_1003122295	3300009012	Grasslands Soil	SRRSPRRGRPYQPLPERRGSWVAKLVVLFVAFILVVGFAILTFSK
Ga0066709_1007739272	3300009137	Grasslands Soil	MSRRSSRRGRPYQPLPVRRVNWAARLVIVVVAVVLVAGFAILSFAR*
Ga0075423_103660992	3300009162	Populus Rhizosphere	MTRRSSRRGRLYQPLPEKRSNWGARLLVLLVAVILVGGFAVLTFTH*
Ga0075423_115793402	3300009162	Populus Rhizosphere	MSRRSSRKGRPYQPLPVRHTNWGARLVIIFVALILVVGFAILSFAR*
Ga0105100_102679612	3300009166	Freshwater Sediment	VGPVSRRSSRKGRPYQPDPEKRVNWVARVLVVAVAFIMIAGFAILTFVR*
Ga0105249_134542052	3300009553	Switchgrass Rhizosphere	MSRRSQRKGRPYQPLPVRHTNWGARLVIIFVAFILVAGFAILSFSR*
Ga0126312_113817482	3300010041	Serpentine Soil	MSRRRRSGRPYQPYPTRRQNWGARLLIVGIGFVMVIGIAILAFTR*
Ga0136847_111588731	3300010391	Freshwater Sediment	MSRRSSRRGRPYQPLPERRVNWGARLAVVFVTFILVAGFAILTFAR*
Ga0120118_11041242	3300012010	Permafrost	MSRRSSRRGRPYQPLPARQVNWGARLVIVVVAVVLVAGFAILSFAR*
Ga0120159_10561991	3300012014	Permafrost	MSRRSSRRGRPYQPLPARQVNWGARLGIVVVAVVLVAGFAILSFAR*
Ga0120139_11392902	3300012019	Permafrost	APRSHRRGRPSQPLPPSRTNWGARLIVIFVAFILVAGFAILTFTK*
Ga0137374_101694962	3300012204	Vadose Zone Soil	MTRRRQRGRAYQPLPARHVNWGARLLVVFVAFVLVAGFAILTFAR*
Ga0137369_101732233	3300012355	Vadose Zone Soil	RAYQPLPARHVNWGARLLVVFVAFVLVAGFAILTFAR*
Ga0137375_103053331	3300012360	Vadose Zone Soil	MSRRSNRRGRPYQPLPERRVNWAARLVIVIVAFVRVAGFAILTFAR*
Ga0157297_103078672	3300012914	Soil	MSRRSSRKGRPYQPLPVRHTNWGARLVIIFVTFILVAGFAILSFSR*
Ga0153915_1000114823	3300012931	Freshwater Wetlands	MSRRTSRRGRPYQPLPERRTHWGARLVIVFVAFILVAGFAVLTFVK*
Ga0153915_104275472	3300012931	Freshwater Wetlands	VSRRSSRRGRPYQPLPERRTNWGARLVVIFVAFILVAGFAVLTFVK*
Ga0120150_10600972	3300013294	Permafrost	MSRRSQRRGRPYQPLPARQVNWGARLVIIFVAFVLVAGFAILSFAR*
Ga0120158_104203062	3300013772	Permafrost	MSRRSPRRGRPYQPLPERRGNWVAKLVVLFVAFILVVGIAVLAFSR*
Ga0167629_10258491	3300015209	Glacier Forefield Soil	MSRRSQRRGRPYQPLPPSRTNWGARLIVIFVAFILVAGFAILTFTK*
Ga0180081_10419281	3300015253	Soil	MSRRSPRRGRPYQPLPERRVNWGARITVVFVAFILVAGFAILTFAR*
Ga0132258_101234095	3300015371	Arabidopsis Rhizosphere	MTRRRRGRPYQPYPTRRVNWGARIVIVAVGFIMVVGFAILTFTH*
Ga0132258_109811103	3300015371	Arabidopsis Rhizosphere	MSRRSSRRGRPYQPLPKRDVNWGARLVIIFVAFVLIAGFAILSFAR*
Ga0132257_1003842071	3300015373	Arabidopsis Rhizosphere	MSRRSSRRGRPYQPLPKLDVNWGARLVIIFVAFVLIAGFAILSFAR*
Ga0132255_1003296381	3300015374	Arabidopsis Rhizosphere	KGRPYQPYPARTTNWAARLVIVAIGFIMVIGIAVLAFSR*
Ga0134083_100796923	3300017659	Grasslands Soil	VSRRSPRRGRPYQPLPERRGSWVAKLVVLFVAFILVVGFAILTFSK
Ga0184610_10772183	3300017997	Groundwater Sediment	MSRRSSRRGRPYQPLPERRVNWAARLVIIVVAFVLVAGFAILTFAR
Ga0184610_11256171	3300017997	Groundwater Sediment	MSRRSNRRGRPYQPLPTRQVNWGARLVIIFVAFVLIAGFAILSFAR
Ga0184638_12068802	3300018052	Groundwater Sediment	MPGRSSRRGRPYQPLPARRTSWGARLVVVFIALILVGGFAILTFVR
Ga0184638_12288152	3300018052	Groundwater Sediment	MSRRSNRRGRPYQPLPTRQVNWGARLVIIFVAFVLIAGFA
Ga0184626_101722962	3300018053	Groundwater Sediment	VSRRSSRRGRPYQPLPERRGSWMAKLVVLFVAFILVLGFAILTFTK
Ga0184626_104084482	3300018053	Groundwater Sediment	MSRRSNRRGRPYQPLPTRRVNWGARLLIIFVAFILVAGFAILSFAR
Ga0184637_102047951	3300018063	Groundwater Sediment	MSRRSSRRGRPYQPIPLRRVNWGARLVVVFVAFILVASFVILTFTR
Ga0184637_102255951	3300018063	Groundwater Sediment	RSSRRGRPYQPLPARRANWGARLVVVFVAFVLVAGFAILTFAR
Ga0184618_100007318	3300018071	Groundwater Sediment	MSRRSSRRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILTFTR
Ga0184618_100304744	3300018071	Groundwater Sediment	AEDGMSRRSQRRGRPYQPLPARRVNWGARLVIVIVAFILVAGFVILSFAR
Ga0184632_100036459	3300018075	Groundwater Sediment	MTRRSGRRGRPYQPLPARHVNWGARLLVVFVAFVLVAGFAILTFTR
Ga0184609_105777801	3300018076	Groundwater Sediment	MTRRRQRGRAYQPLPARHVNWGARLLVVFVAFVLVAGFAILTFAR
Ga0184639_103951882	3300018082	Groundwater Sediment	MSRRSSRRGRPYQPLPVRPINWGARLVVIFVAFILVAGFAILTFAR
Ga0190272_131986901	3300018429	Soil	MSRRSQRRGRPYQPMPVRRVNWVARLVIVFIAFTLVAGFAILTFAR
Ga0190270_129384052	3300018469	Soil	MSRKSQRRGRPYQPLPTRHVNWGARLVIIFVAFVLVAGFAILSFAR
Ga0184643_13844942	3300019255	Groundwater Sediment	MSRRSQRRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILTFTR
Ga0193751_10006419	3300019888	Soil	MSRRSPRRGRPYQPLPERRGSWVAKLVVLFVAFILVVGIAVLAFSR
Ga0193745_10729692	3300020059	Soil	MSRRSQRRGRPYQPLPARRVNWGARLVIVIVAFILVAGFAILSFAR
Ga0210382_100566432	3300021080	Groundwater Sediment	MSRRSQRRGRPYQPLPARRVNWGARLVIVVVAFILVAGFAILSFAR
Ga0193719_103253452	3300021344	Soil	VSRRSSRRGRPYQPLPERHTNWGARLLVLFVAVILIAGFAILTFTR
Ga0224500_100217952	3300022213	Sediment	VGPVSRRSSRRGRPYQPLPQRNVNWGARLLVVFVAFIMVAGFAILTFAR
Ga0224505_100503234	3300022214	Sediment	VSRRSSRRGRPYQPLPQRNVNWGARLLVVFVAFIMVAGFAILTFAR
Ga0209001_10726122	3300025002	Soil	MSRRSSRRGRPYQPLPQRRVNWGARLLVVFVAFILVAGFAILTFAR
Ga0209619_104458591	3300025159	Soil	ALPPAPRVGPMSRRSSRRGRPYQPLPQRRVNWGARLLVVFVAFVLVAGFAILTFAR
Ga0209109_1000409910	3300025160	Soil	MSRRSSRRGRPYQPLPVRRVNWVARLVVVFVAFILVAGFAILTFAR
Ga0209109_100165566	3300025160	Soil	MSRRSSRRGRPYQPLPQRRVNWGARLLVVFVAFVLVAGFAILTFAR
Ga0209109_103317442	3300025160	Soil	MSRRSPRRGRPYQPLPKRHVNWGARLTVVFVAFILVVGFAILTFAR
Ga0209519_107276801	3300025318	Soil	SSRRGRPYQPLPQRRVNWGARLLVVFVAFILVAGFAILTFAR
Ga0209341_100818443	3300025325	Soil	MSRRSPRRGRPYQPLPVRRVNWVARLVVVFIAFVLVASFAIITFTR
Ga0209341_102572463	3300025325	Soil	MSRRSSRRGRPYQPLPVRRVNWVARLVVVFVAFVLVAGFAILTFAR
Ga0209341_107587072	3300025325	Soil	MSRRSPRRGRPYQPLPQRHVNWGARLTVVFVAFILVVGFAILTFAR
Ga0210132_10774812	3300025538	Natural And Restored Wetlands	VSRRSSRRGRPYQPLPPRRTNWGARLVIVFVAFILVAGFAVLTFVK
Ga0210113_11131702	3300025796	Natural And Restored Wetlands	MSRSRRSGRRGRPYQPYPERRTNWAARLIIVVVAFIMVAGIAVLTFTQ
Ga0210144_11868942	3300025817	Natural And Restored Wetlands	VSRRGNRRGRPYQPYPDRRVNWGARLLIVAIAFVMVAGIAILAFAR
Ga0207653_104205482	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSSRKGRPYQPLPVRHTNWGARLVIIFVAFILVAGFAILSFSR
Ga0207707_111867502	3300025912	Corn Rhizosphere	MSRRSQRRGRPYQPLPTRRVNWGARLVIVIVAFVLVAGFAILSFAR
Ga0207646_100265517	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSSRKGRPYQPLPERRVNWGARLVIIFVAFILVAGFAILSFAR
Ga0207646_115286782	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRSSRRGRPYQPLPERRVNWGARLVIVVVAFILVAGIAVLSFAR
Ga0207690_117652451	3300025932	Corn Rhizosphere	MSRRSQRKGRPYQPLPVRHTNWGARLVIIFVAFILVAGFAILSFAR
Ga0207648_103721123	3300026089	Miscanthus Rhizosphere	MSRRSQRKGRPYQPLPVRHTNWGARLVIIFVAFILVAGFAILSFSR
Ga0207648_116891181	3300026089	Miscanthus Rhizosphere	SCSAANGADKSMSRRSQRRGRPYQPLPTRRVNWGARLVIVIVAFVLVAGFAILSFAR
Ga0256867_100250693	3300026535	Soil	VTRRSGRKGRPYQPYPVRRVNWAARLLIVAIAFIMVAGFAVLTFVR
Ga0209968_10839972	3300027526	Arabidopsis Thaliana Rhizosphere	SRKGRPYQPLPVRHTNWGARLVIISVAFILVAGFAILSFSR
Ga0214469_10445302	3300027636	Soil	MSRRSRRGRPYQPYPQRRVNWGARLLIVAIAFILVAGFAILTFAR
Ga0214468_10309502	3300027647	Soil	MSRRTRRGRPYQPYPQRRVNWGARLLIVAIAFILVAGFAILTFAR
Ga0256866_10587312	3300027650	Soil	MSRRRKGRPYQPYPTRNVNWGARLLIVLVGFIMVVGIAILTFTR
Ga0307295_100759272	3300028708	Soil	MSRRSQRRGRPYQPLPARRVNWGARLVIVFVAFVLVAGFAILSFAR
Ga0307298_102021952	3300028717	Soil	MSRRSQRRGRPYQPLPTRRVNWGARLVIVFVAFVLVAGFAILSFAR
Ga0307319_101330381	3300028722	Soil	QRRGRPYQPLPTRRVNWGARLVIVFVAFVLVAGFAILSFAR
Ga0307320_101698262	3300028771	Soil	MSRRSNRRGRPYQPLPTRQVNWGARLVIIFVAFVLVAGFAILSFAR
Ga0307282_100999893	3300028784	Soil	MSRRAQRRGRPYQPLPARRVNWGARLVIVVVAFILVAGFAILSFAR
Ga0307504_100012466	3300028792	Soil	MSRRSTRRGRPYQPLPERRVNWGARLVVIFVAFFLIAGIAILSFTR
Ga0307299_100618173	3300028793	Soil	MSRRSSHRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILTFTR
Ga0307305_104355642	3300028807	Soil	MSRRSSRRGRPYQPLPERHTNWGARLLVLFVAVILIAGF
Ga0307302_100676403	3300028814	Soil	MSRRSQRRGRPYQPLPPSRTSWGARLIVIFVAFVLVAGFAILTFSR
Ga0307296_101949073	3300028819	Soil	RSPRRGRPYQPLPARRVNWGARLVIVVVAFILVAGFAILSFAR
Ga0307310_103447062	3300028824	Soil	MTRRRRGRPYQPYPARQVNWGARVIIVIVGFIMILGIAILTFTR
Ga0307312_102169261	3300028828	Soil	QRRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILTFTR
Ga0307312_103306371	3300028828	Soil	SSRRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILTFTR
Ga0307312_103658942	3300028828	Soil	GAHDPVPAPSRVGPMSRRSQRRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILTFTR
Ga0307312_111716911	3300028828	Soil	MSRRSQRRGRPYQPLPARRVNWGARLVIVIVAFILVAG
Ga0307278_103159001	3300028878	Soil	MSRRSQRRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILSFAR
Ga0307308_105689971	3300028884	Soil	SSFAASGAGEGMSRRSQRRGRPYQPLPERRVNWGARLVIFFVAFVLVAGFAILTFAR
Ga0299907_100733784	3300030006	Soil	MSRRRRGRPYQPYPTRNVNWGARLLIVLVGFIMVVGIAILTFTR
Ga0299907_105240712	3300030006	Soil	VTRRSGRKGRPYQPYPVRRVNWAARLLIVAIAFIMVAGFAVLTF
Ga0299907_109714872	3300030006	Soil	MTRRGGRRGRAYQPIPTRRVNWGARLLVVFVAFIMVAGFAILTFAR
Ga0268386_107971622	3300030619	Soil	MSRSRRSGRKGRPYQPYPERRTNWAARLIIVVVAFIMVAGIAVLTFTQ
Ga0299913_100090314	3300031229	Soil	VSRRSGRKGRPYQPYPVRRVNWGARLLIVAVAFIMVAGFAVLTFAR
Ga0299913_102885391	3300031229	Soil	RPYQPYPVRRVNWAARLLIVAIAFIMVAGFAVLTFVR
Ga0299913_107789802	3300031229	Soil	MSRSRRSGSKGRPYQPYPERRTNWAARLIIVVVAFIMVAGIAVLTFTQ
Ga0310813_110834522	3300031716	Soil	MTRRRRGRPYQPYPTRRVNWGARIVIVAVGFIMVVGFAILTFTH
Ga0307468_1024336482	3300031740	Hardwood Forest Soil	VSRRSSRRGRPYQPLPERRTNWGARLLVLFVAVILIAGFAILTFTR
Ga0214473_110379801	3300031949	Soil	MSRRSSRRGRPYQPLPARRVNWGARLVIFFVAFVLVAGFAILSFAR
Ga0326597_113223052	3300031965	Soil	MSRRSPRRGRPYQPLPERHVNWAARLVVIFVAFILVAGFAILTFAR
Ga0326597_120147852	3300031965	Soil	MSRRSSRRGRPYQPLPERNVNWGARLTVVFVAFILVAGFAILTFAR
Ga0315540_102706511	3300032061	Salt Marsh Sediment	MSRRSGRRGRPYQPYPERRANWGARLLVVFVAFVMIAGFAILTF
Ga0310890_113277342	3300032075	Soil	VTRRRKGRAYQPYPARRSNWAARLVIVAIGFIMVLGIAVLAFTR
Ga0315281_1000559819	3300032163	Sediment	VRRRSSRRGRPYQPLPKSQSNWGARLIVVFVAFILVAGFAILTFAR
Ga0315281_100483948	3300032163	Sediment	VGALNPVSRRSSRRGRPYQPLPVRRVNWGARLVVVFVAFILVAGFAILTFAR
Ga0214472_1000744017	3300033407	Soil	MSRRSSRRGRPYQPLPARRVNWGARLVIIFVAFVLVAGFAILSFSR
Ga0214471_1000136217	3300033417	Soil	VTRRSGRRGRAYQPMPTRRVNWGARLLVVFVAFIMVAGFAILTFAR
Ga0326726_103560272	3300033433	Peat Soil	MSRRSPRRGRPYQPLPERNINWGARLTVVVIAFILVIGFAILAFAR
Ga0326726_112344292	3300033433	Peat Soil	MSRRSPRRGRPYQPLPERNINWGARLTVVIIAFILVIGFAILAFSH
Ga0364926_149869_294_434	3300033812	Sediment	MSRRSSRRGRPYQPLPARRANWGARLVVVFVAFVLVAGFAILTFAR
Ga0364930_0188474_165_305	3300033814	Sediment	MSRRSPRRGRPYQPLPQRHVNWGARLTVVVVAFILIVGFAILTFAR
Ga0364936_107331_431_553	3300034773	Sediment	MSRRSSRRGRPYQPLPASRVNWVARLVIIFIAFTLVAGFAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F038581

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences