NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F037879

Metagenome / Metatranscriptome Family F037879

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F037879
Family Type Metagenome / Metatranscriptome
Number of Sequences 167
Average Sequence Length 49 residues
Representative Sequence WVWYVGPFAGGALAALAYDYLYLRPPRPEPVGPPETGVIEPRPGDAATS
Number of Associated Samples 147
Number of Associated Scaffolds 167

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.20 %
% of genes near scaffold ends (potentially truncated) 98.80 %
% of genes from short scaffolds (< 2000 bps) 94.61 %
Associated GOLD sequencing projects 140
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (86.826 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(14.371 % of family members)
Environment Ontology (ENVO) Unclassified
(28.144 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.102 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.
1F47_03808670
2JGI10216J12902_1107197961
3C688J35102_1196768252
4Ga0063454_1006970181
5Ga0063454_1016176381
6Ga0063455_1000512822
7Ga0063455_1011373822
8Ga0062388_1012925511
9Ga0062591_1022391752
10Ga0066677_108149732
11Ga0066684_101930951
12Ga0066684_102264771
13Ga0066671_102458921
14Ga0066675_105065682
15Ga0070683_1003560274
16Ga0070690_1012801731
17Ga0070680_1000552837
18Ga0070660_1007538722
19Ga0070660_1007611072
20Ga0070671_1009679263
21Ga0070714_1011186201
22Ga0070711_1020671152
23Ga0066682_101490473
24Ga0070681_108957571
25Ga0070706_1015022991
26Ga0070684_1008706632
27Ga0070697_1012243892
28Ga0066697_104795491
29Ga0070695_1002463451
30Ga0066698_107116671
31Ga0066699_111435042
32Ga0066693_104335651
33Ga0066708_108035742
34Ga0068854_1017521411
35Ga0068866_104967701
36Ga0066903_1045989013
37Ga0066903_1074137212
38Ga0066651_105843403
39Ga0066652_1006374981
40Ga0066652_1009433981
41Ga0070716_1017696362
42Ga0066658_105212321
43Ga0066665_103985203
44Ga0066660_112151482
45Ga0075428_1017131882
46Ga0075434_1018713852
47Ga0075426_114013192
48Ga0075424_1026527472
49Ga0075436_1007643811
50Ga0079216_106487752
51Ga0075435_1005104001
52Ga0066710_1042929921
53Ga0099828_107121433
54Ga0099827_100230711
55Ga0066709_1020871142
56Ga0066709_1026224582
57Ga0105243_119766572
58Ga0105238_113817561
59Ga0105238_116143592
60Ga0126313_110719662
61Ga0126313_114147991
62Ga0126305_105848011
63Ga0126308_100910381
64Ga0126314_113588722
65Ga0126310_101223793
66Ga0126311_105827743
67Ga0126311_109396731
68Ga0126306_106681012
69Ga0134067_104965552
70Ga0134065_104514201
71Ga0134063_104833482
72Ga0134125_113182651
73Ga0134128_109201993
74Ga0105239_127615782
75Ga0105239_131715011
76Ga0134122_105661293
77Ga0120174_10642232
78Ga0137388_105331021
79Ga0137383_110409691
80Ga0137382_101286071
81Ga0137382_108531251
82Ga0137380_110091771
83Ga0137381_110796131
84Ga0137376_114186051
85Ga0137378_108525492
86Ga0137377_114037972
87Ga0137377_116401512
88Ga0137386_106082422
89Ga0137367_100517611
90Ga0137366_104695791
91Ga0137371_112662441
92Ga0137373_104213051
93Ga0137407_112709461
94Ga0137407_119093431
95Ga0162652_1000467391
96Ga0164299_100103541
97Ga0164306_102146541
98Ga0157373_108886652
99Ga0157369_117602491
100Ga0157372_103813464
101Ga0120181_10513291
102Ga0134079_101681341
103Ga0134079_106813643
104Ga0120104_10860002
105Ga0134073_103634151
106Ga0132257_1046108832
107Ga0184605_102545531
108Ga0184638_11606241
109Ga0184617_10894791
110Ga0184618_102747652
111Ga0184618_105152112
112Ga0184635_102713872
113Ga0066667_112657062
114Ga0066662_111474011
115Ga0184643_14341362
116Ga0173479_106369522
117Ga0193731_10144731
118Ga0197907_106603932
119Ga0206356_100613121
120Ga0206352_104802421
121Ga0210378_103213042
122Ga0213874_101894221
123Ga0222624_15012052
124Ga0222622_105277081
125Ga0179589_102349672
126Ga0247666_10070401
127Ga0207647_100859064
128Ga0207684_102153854
129Ga0207671_109371651
130Ga0207693_102681293
131Ga0207649_101138071
132Ga0207664_107794851
133Ga0207640_112858091
134Ga0207678_111149172
135Ga0207648_109239023
136Ga0209153_10929621
137Ga0209801_13642262
138Ga0209577_106832461
139Ga0209590_105139632
140Ga0307309_101842591
141Ga0307298_101482741
142Ga0307298_102755391
143Ga0307282_103834762
144Ga0307323_100856793
145Ga0307299_101849642
146Ga0307284_100240801
147Ga0307305_100291881
148Ga0307305_105153112
149Ga0307292_103258461
150Ga0307302_105294382
151Ga0307296_106217061
152Ga0307310_105787362
153Ga0307312_107420911
154Ga0307312_111105921
155Ga0307312_111787822
156Ga0307289_103228301
157Ga0307277_100330542
158Ga0307308_100962582
159Ga0302179_103254902
160Ga0307408_1007035692
161Ga0310686_1130035571
162Ga0307407_107856352
163Ga0308175_1023332532
164Ga0308176_119298221
165Ga0307414_112249381
166Ga0310906_100332695
167Ga0334913_082837_521_676
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 33.77%    β-sheet: 0.00%    Coil/Unstructured: 66.23%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

51015202530354045WVWYVGPFAGGALAALAYDYLYLRPPRPEPVGPPETGVIEPRPGDAATSSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered RegionsSignal Peptide
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
86.8%13.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Bog Forest Soil
Groundwater Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Serpentine Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Agricultural Soil
Permafrost
Soil
Grasslands Soil
Grass Soil
Sub-Biocrust Soil
Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Agricultural Soil
Palsa
Soil
Arabidopsis Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Plant Roots
Populus Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
3.6%14.4%12.6%5.4%3.6%12.0%3.0%3.6%4.2%3.6%3.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F47_038086702170459009Grass SoilLAGGVIAACVYEMLYLRPTKPAPVGPPETGVLEHAPGEAAAS
JGI10216J12902_11071979613300000956SoilVQNVWTDAWVWYVGPVLGGVLAALAYEWLYLRPLSPVPVGPPETGVEEPGPGRAAAS*
C688J35102_11967682523300002568SoilAGGVIAASLYELLYLRPPRPVPVGPPETGVEEIRPGDAAVE*
Ga0063454_10069701813300004081SoilVWYVGPFAGAVIAAALYELLYLRPTAPEPVGPPETGVEEPGAGEAAYS*
Ga0063454_10161763813300004081SoilRDWSDAWVWYLGPFLGGALAAVVYEWLYLRPPAPLPVGPPETGVIEPRPGDAAVS*
Ga0063455_10005128223300004153SoilWVWYVGPFAGGALAAVAYEWLYLRPPAPLPVGPPETGVIEPRPGDAAVS*
Ga0063455_10113738223300004153SoilAGAVIAGSLYELLYLRPDRPEPVGPPESGVEEPGAGEAALS*
Ga0062388_10129255113300004635Bog Forest SoilNGWVWYAGPVLGAAVAALLYEFLYLRPAASEQAGPPETGVLEPGISDAAS*
Ga0062591_10223917523300004643SoilWVWYAGPFIGGVLAALAYEYLYLRSPGPLPVGPPDSGVIEPRPGDTALS*
Ga0066677_1081497323300005171SoilANGWVWYVGPAIGGALAAIAYELLYLRPLAPVPVGPAETGVQEPRPGDTAAS*
Ga0066684_1019309513300005179SoilWGHFWVWYVGPLAGGAIAALLYEALYLGPPKPEPVGPPETGVEEAAPGTAALE*
Ga0066684_1022647713300005179SoilVWYIGPFAGAVIAASLYELLYLRPARPVPVGPPETGVVEIRPGDAAVE*
Ga0066671_1024589213300005184SoilWWVWYAGPVVGACVAALTYEWLYLRMRPLPVGPPESGVIEPRPGETAVT*
Ga0066675_1050656823300005187SoilGPLLGGALAALAYEWLYLRPLSPVPVGPPETGVEEPGPGRAAAQ*
Ga0070683_10035602743300005329Corn RhizosphereGPLLGAGLAALAYEWLYLRPLSPEPVGPPETGLEEPGAGDPAAI*
Ga0070690_10128017313300005330Switchgrass RhizosphereWYIGPFAGGVIAASLYELLYLRPTKPVPVGPPETGVEEVRPGDAAVE*
Ga0070680_10005528373300005336Corn RhizosphereGPLIGAGLAALAYEHLYLRPLSPEPVGPPETGLEEPGAGDPAAI*
Ga0070660_10075387223300005339Corn RhizosphereGPLAGGVIAASVYELLYLRPSRPAPVGPPETGVEEPGAGEAALS*
Ga0070660_10076110723300005339Corn RhizospherePFAGAVIAASLYELLYLRPAGPEPVGPPESGVEEPGAGEAALS*
Ga0070671_10096792633300005355Switchgrass RhizosphereGPLIGGGLAALAYDRLYLRPASPEPVGPPETGVEQPGAGEAATL*
Ga0070714_10111862013300005435Agricultural SoilGNHWSHFWVWYVGPLAGGVIAASIYEMLYLRPSRPVPVGPPETGVVEIAPGEAAAG*
Ga0070711_10206711523300005439Corn, Switchgrass And Miscanthus RhizosphereVDNHWSHFWVWYIGPIAGGAIAALVYEALYLGPPKPEPVGPPETGVEEIAPGTAALE*
Ga0066682_1014904733300005450SoilHWADAWVWYAGPFLGGVLAALAYEYLYLRSPGPLPVGPPDTGVIEPRPGDAAAS*
Ga0070681_1089575713300005458Corn RhizosphereFWVWYVGPLAGGVIAASVYELLYLRPDRPAPVGPPESGVEEPGAGEAALS*
Ga0070706_10150229913300005467Corn, Switchgrass And Miscanthus RhizosphereNGWVWYAGPAVGAVVAALAYEWLYLRPLRPEPVGPAETGVREPRPGDAAAS*
Ga0070684_10087066323300005535Corn RhizosphereGPFAGAVIAASLYELLYLRPAGPEPVGPPESGVEEPGAGEAALS*
Ga0070697_10122438923300005536Corn, Switchgrass And Miscanthus RhizosphereHEWTDAWVWYVGPFAGAVLAALSYEWLYLRPLRPLTVGPPETGVLEPGAGDSP*
Ga0066697_1047954913300005540SoilDAWVWYVGPFLGAALAALAYEYLYLRPPRPVPVGPPDTGVVEPRPGDAAVS*
Ga0070695_10024634513300005545Corn, Switchgrass And Miscanthus RhizosphereAWVWYAGPFVGGALAALVYEWLYLRPPRPLPVGPPDTGVLEPRPGDSAAS*
Ga0066698_1071166713300005558SoilQNAWGSGWVWYLGPVLGAVLAALAYEWLYLRPLSPEPVGPPETGVEEPAPGQAATG*
Ga0066699_1114350423300005561SoilPQLAGGHWANGWVWYVGPVAGATVAALAYEWLYLRPLRPKPVGPAETGVREPRPGDAAAS
Ga0066693_1043356513300005566SoilQNVWSDAWVWYLGPLLGAALGALAYEWLYLRPLSPVPVGPPETGVEEPAPGRAATS*
Ga0066708_1080357423300005576SoilNHWGHFWVWYVGPIAGGAIAALVYEALYLGPPRPEPVGPPETGVQETAPGTAALE*
Ga0068854_10175214113300005578Corn RhizosphereDSWKHWWVWYVGPFAGAVIAASLYEILYLRPSRPEPVGPPETGVEEPGAGDAALS*
Ga0068866_1049677013300005718Miscanthus RhizosphereLGPAIGAVAAALVYEYLYLRPASPEPVGPPETGVEEPGAGETATA*
Ga0066903_10459890133300005764Tropical Forest SoilPLLGGGVAALLYEFLYPKKLGPEPVGPPETGVEEPRPGQTAADV*
Ga0066903_10741372123300005764Tropical Forest SoilGNYWSHAWIWYAGPFLGGAAAALVYDLVYLRVIAPVTPVGPPETGLEEPRPGDTAVS*
Ga0066651_1058434033300006031SoilTNWWVWYAGPVVGAVLAAGVYEWLYLRPPRPFPVGPPETGVIEPRPGDTAVS*
Ga0066652_10063749813300006046SoilWVWYVGPFAGGALAALAYDYLYLRPPRPEPVGPPETGVIEPRPGDAATS*
Ga0066652_10094339813300006046SoilWYVGPLAGGAIAALLYEALYLGPPKPEPVGPPETGVEEAAPGTAALE*
Ga0070716_10176963623300006173Corn, Switchgrass And Miscanthus RhizosphereHFWVWYVGPIAGGAIAALVYEALYLGPPKPEPVGPPETGVEEIAPGTAALE*
Ga0066658_1052123213300006794SoilWGQCWIYYLGPALGAVIAALGYEWLYLRPLRPVPVGPPETGVEDPRLGDTAAS*
Ga0066665_1039852033300006796SoilGWVWYAGPALGAVVAALAYEYLYLRPLSPVPVGPSETGVREPRPGDTAAS*
Ga0066660_1121514823300006800SoilHTAGSNGWVWYLGPALGAVLAALAYEWLYLRPLGPEPVGPPETGVEEPAPGQAATG*
Ga0075428_10171318823300006844Populus RhizospherePFLGGAAAALLYEYLYLRPLEPEPVGPPETGLDEPAPGEAAGV*
Ga0075434_10187138523300006871Populus RhizospherePFAGAVIAAVIYEVLYLRPPRPLPVGPPESGLEEPAPGEAALE*
Ga0075426_1140131923300006903Populus RhizosphereVWSNAWIWYAGPFLGGAAAALAYDLLYLRHGGPTPVGPPESGLEEPRPGDAAVS*
Ga0075424_10265274723300006904Populus RhizosphereVWYVGPLVGGAVAALAYEWLYLRPPAPMPVGPPETGVIEPRPGDTAVS*
Ga0075436_10076438113300006914Populus RhizosphereWVYWVGPLIGAGLAALAYERLYLRPVSPEPVGPPETGLEEPGAGDPAAL*
Ga0079216_1064877523300006918Agricultural SoilGGDWADAWIYYLGPLGGGAAAALLYETLYLRPARPVPVGPPETGLEEPRPGDTAAR*
Ga0075435_10051040013300007076Populus RhizosphereVGPLLGAGIAALAYHHLYLRTLSLEPPGPPETGLEEPRPGDAASI*
Ga0066710_10429299213300009012Grasslands SoilVWYVGPLAGGAIASLVYEALYLGPPKPEPVGPPETGVEEIAPGTAALE
Ga0099828_1071214333300009089Vadose Zone SoilWYAGPLVGGAIAALVYEYLYLRPLAPVPVGPPETGVQEPRPGDTAAS*
Ga0099827_1002307113300009090Vadose Zone SoilWYAGPLVGGAIAALAYEYLYLRPLAPVPVGPPETGVQEPRPGDTAAS*
Ga0066709_10208711423300009137Grasslands SoilAVLAAFAYEFLYLRPTEPAPVGPPETGVEEPGVGRAAAG*
Ga0066709_10262245823300009137Grasslands SoilLAGGAIAALVYEALYLGPPKPEPVGPPETGVEEIAPGTAALE*
Ga0105243_1197665723300009148Miscanthus RhizosphereYWVGPLIGGGLAALAYDRLYLRPPSPEPVGPPETGLDEPGAGEAASL*
Ga0105238_1138175613300009551Corn RhizosphereGPLAGGVIAASIYEMLYLRPSRPEPVGAPETGVIEIAPGEAAAG*
Ga0105238_1161435923300009551Corn RhizosphereVWYIGPCAGGVIAAAVYELLYLRPTRPEPVGPPETGVEEPRAGDAALS*
Ga0126313_1107196623300009840Serpentine SoilDGWVWYLGPLLGGGLGALTYEYLYLRPARPAPVGPPETGIEEPRPGDAAVS*
Ga0126313_1141479913300009840Serpentine SoilAWVWYLGPALGGVVAALAYERLYLSPLAPEPVGPPETGVLEPRPGDTALS*
Ga0126305_1058480113300010036Serpentine SoilLVQNIWSDAWVWYLGPAIGAIAAAWLYEYLYLRPLSPEPVGPPETGIEEPRPGQAAAS*
Ga0126308_1009103813300010040Serpentine SoilVGPAIGAVAAAWLYEYLYLRPLSPEPVGPPETGLEEPGAGEAALR*
Ga0126314_1135887223300010042Serpentine SoilVWYLGPALGGVVAALAYERLYLSPLAPEPVGPPETGVLEPRPGDTALS*
Ga0126310_1012237933300010044Serpentine SoilWYVGPLAGGVIAAVVYELLYLRPPRPAVVGPPETGVEEPRPGDTALS*
Ga0126311_1058277433300010045Serpentine SoilFWIWYVGPLAGGVIAAVVYELLYLRPPRPAVVGPPETGVEEPRPGDTALS*
Ga0126311_1093967313300010045Serpentine SoilDAWVWYVGPVIGAVIAAVLYEWLYLRPLAPVPVGPAESGVLEPRPGDTAAS*
Ga0126306_1066810123300010166Serpentine SoilYIGPFAGAVIAAVAYELLYLRPVGPAVVGPPETGVEEPRPGDTALS*
Ga0134067_1049655523300010321Grasslands SoilGWIYYLGPALGAVVAALAYEWLYLRPLAPTPVGPPETGVEEPRPGDTAVS*
Ga0134065_1045142013300010326Grasslands SoilHWTDGWVWYAGPVVGGCLAALAYEWLYLRMRPLPVGPPESGVIEPCPGETAVT*
Ga0134063_1048334823300010335Grasslands SoilNAWVWYVGPAAGALAAALAYEWLYLRPTEPEPVGPPETGVEEPGAGRAAAS*
Ga0134125_1131826513300010371Terrestrial SoilWVWYLGPAIGALAAALVYEYLYLRPVSPEPVGPPETGLEEPGAGETATA*
Ga0134128_1092019933300010373Terrestrial SoilFAGAVIAASLYELLYLRPERPAPVGPPESGVEEPGAGEAALS*
Ga0105239_1276157823300010375Corn RhizosphereSYWVGPLIGGALAALAYEHLYLRTLGPEPPGPPETGLEEPRPGDAASI*
Ga0105239_1317150113300010375Corn RhizospherePFAGGVIAASLYELLYLRPARPAPVGPPETGVEEPRPGDAALS*
Ga0134122_1056612933300010400Terrestrial SoilAGPFVGGALAALLYDTLYLRSPRPVEPVGTPDTGVIEPRPGDAALS*
Ga0120174_106422323300012008PermafrostSHFWVWYIGPFAGAVIAASTYELLYLRPARPVPVGSPETGVQEPRPGDAAVS*
Ga0137388_1053310213300012189Vadose Zone SoilWVWYVGPFLGGALAALAYDFLYLRPPRPVPVGPPETGVLEPRPGDAAVS*
Ga0137383_1104096913300012199Vadose Zone SoilVGPFIGGALAALAYDTLYLRTPRPLLPVGPPDSGVIEPRPGDTAAS*
Ga0137382_1012860713300012200Vadose Zone SoilGHWTDAWIWYVGPVAGATLATLAYEYLYLRPPRPLPVGPPDTGVIEPRPGDAAVS*
Ga0137382_1085312513300012200Vadose Zone SoilWVWYVGPFLGGALAALAYEYLYLRPPRPVPVGPPDTGVVEPRPGDAAVS*
Ga0137380_1100917713300012206Vadose Zone SoilHWSDAWVWYVGPFVGGALAALAYNYLYLRPPRPIPVGPPDTGVLEPRPGDAAVS*
Ga0137381_1107961313300012207Vadose Zone SoilAWVWYVGPAAGALAAALAYEWLYLRPTEPEPVGPPETGVEEPGAGRTAAG*
Ga0137376_1141860513300012208Vadose Zone SoilHWGHFWVWYVGPLAGGAIAALLYEALYLGPPKPEPVGPPETGVEETAPGTAALE*
Ga0137378_1085254923300012210Vadose Zone SoilGWVWYLGPALGAVLAALAYEWLYLRPLGPEPVGPPETGVEEPAPGQAATG*
Ga0137377_1140379723300012211Vadose Zone SoilPELVGNFWSHAWIWYAGPFLGGAAAALAYDLLYLRHGGPTPVGPPETGLEEPRAGDAAVS
Ga0137377_1164015123300012211Vadose Zone SoilVWYAGPFAGGALAALAYDFLYLRPPRPEPVGPPETGVLEPRPGDASTT*
Ga0137386_1060824223300012351Vadose Zone SoilWYVGPFVGGALAALAYDFLYLRPLRSLPVGPPETGVLEPRPGDTAVS*
Ga0137367_1005176113300012353Vadose Zone SoilWYIGPVLGAAAAALVYEFLYLRPLAPVPVGPAETGVREPRPGDAAAS*
Ga0137366_1046957913300012354Vadose Zone SoilQLVGGHWADCWIWYVGPTAGAVVAALAYEWLYLRPLGPTPVGPAATGVLEPRPGDAAAS*
Ga0137371_1126624413300012356Vadose Zone SoilWVWYAGPILGAVVAGLAYEFLYLRPLAPVPVGPPETGLDEPGPRETAVS*
Ga0137373_1042130513300012532Vadose Zone SoilLAGGHWADGWVWYLGPVIGAAAAALAYEWLYLRPLAPVPVGPAETGVREPRPGDAAAS*
Ga0137407_1127094613300012930Vadose Zone SoilAGAVIAASLYELLYLRPARPEPVGPPETGVEEPGAGEAAIS*
Ga0137407_1190934313300012930Vadose Zone SoilWVWYIGPFAGAVIAASVYELLYLRPDRPEPVGPAETGVSEPGAGEAALS*
Ga0162652_10004673913300012941SoilDRAHRAVGPLAGGVIAAVTYEMLYLRPLGPEVVGPPETGVEEPRPGDTALS*
Ga0164299_1001035413300012958SoilGPFAGGVIAASLYELLYLRPTKPVPVGPPETGVEEVRPGDAAVE*
Ga0164306_1021465413300012988SoilWVWYIGPFAGGVIAASLYELLYLRPTKPVPVGPPETGVEEVRPGDAAVE*
Ga0157373_1088866523300013100Corn RhizosphereAVIAASLYELLYLRPERPEPVGTPESGVEEPGAGKAALS*
Ga0157369_1176024913300013105Corn RhizosphereLAGGVIAASVYELLYLRPSRPAPVGPPETGVEEPGAGEAALS*
Ga0157372_1038134643300013307Corn RhizosphereYWVGPLLGAGLAALAYEWLYLRPLSPEPVGPPETGLEEPGAGDPAAI*
Ga0120181_105132913300013766PermafrostTDAWVWYAGPFVGGALAALVYDTLYLRTLRPLLPVGPPDSGVIEPRPGDTAVS*
Ga0134079_1016813413300014166Grasslands SoilVWSNAWVWYLGPLIGGALAALAYEWLYLRPVEPEPVGPPETGVEEPGAGRSAA*
Ga0134079_1068136433300014166Grasslands SoilQNHWTDGWVWYAGPVVGGCLAALAYEWLYLRMRPLPVGPPESGVIEPRPGETAVT*
Ga0120104_108600023300014829PermafrostVWYAGPFVGGALAALVYDALYLRTLRPLMPVGPPDSGVIEPRPGDTAVS*
Ga0134073_1036341513300015356Grasslands SoilNFWGEAWIYYLGPALGAVIAALAYEYLYLRPPRPEPVGPPETGVEEPRPGDTAAS*
Ga0132257_10461088323300015373Arabidopsis RhizosphereWVGPLIGAGLAALAYERLYLRPVSPEPVGPPETGLEEPGAGDPAAL*
Ga0184605_1025455313300018027Groundwater SedimentWIWYLGPFAGGALGALTYEWLYLRPPAPLPVGPPESGVIEPRPGDTAVS
Ga0184638_116062413300018052Groundwater SedimentNFWGDAWIYYTAPLVGGAAAALLYDYLYLRAPALVPPGPPETGLVEPRPGDAAAS
Ga0184617_108947913300018066Groundwater SedimentPAIGAVAAAWLYEYLYLRPLSPEPVGPPETGLDEPGPGRAAAT
Ga0184618_1027476523300018071Groundwater SedimentWANGWIWYIGPLIGGGAAALAYEFLYLRPLRPVPVGPPETGIEEPRPGDAAVS
Ga0184618_1051521123300018071Groundwater SedimentYVGPAIGGVLAALAYEWLYLRPVEPEPVGPPETGVEEPGAGEAALS
Ga0184635_1027138723300018072Groundwater SedimentVWSDAWVWYLGPAIGAVAAALVYEYLYLRPVSPEPVGPPETGLEEPGAGETATA
Ga0066667_1126570623300018433Grasslands SoilWYVGPLAGGAIAALVYEALYLGPPKPEPVGPPETGVEEIAPGTAALE
Ga0066662_1114740113300018468Grasslands SoilAGPFAGAVIAAALYEMLYLRPPTPEPVGPPETGVVEPRPGDAALS
Ga0184643_143413623300019255Groundwater SedimentWYLGPALGAVLAALAYEWLYLRPLEPEPVGPPETGIEEPAPGRAATE
Ga0173479_1063695223300019362SoilYVGPLVGGAAAALLYEYLYLRPPGPEPVGPPETGLDEPAPGEAAGV
Ga0193731_101447313300020001SoilDAWIWYVGPFVGGALAALVYDTLYLRTPRPLLPVGPPDSGVAEPRPGDTAAS
Ga0197907_1066039323300020069Corn, Switchgrass And Miscanthus RhizosphereVGPFAGAVIAASVYELLYLRPPRPEPVGPPETGVEEPGAGEAALS
Ga0206356_1006131213300020070Corn, Switchgrass And Miscanthus RhizosphereVWYVGPLAGGVIAASVYELLYLRPARPDPVGSPNSGVDEPGVGEAALS
Ga0206352_1048024213300020078Corn, Switchgrass And Miscanthus RhizosphereWYVGPLAGAVIAASLYELLYLRPERPTPVGPAESGVEEPGVGRAALS
Ga0210378_1032130423300021073Groundwater SedimentIWYLGPLVGGGLAALAYELLYLRPLRPVPVGPPETGIEEPRPGDAAVS
Ga0213874_1018942213300021377Plant RootsPLAGAVIAAALYELLYLRPTQPAVVGTPEAPVDEPAAGEAALS
Ga0222624_150120523300021951Groundwater SedimentYVGPVAGATLAALVYEYLYLRPPRPIPVGPPDTGVIEPRPGDAAVS
Ga0222622_1052770813300022756Groundwater SedimentWYVGPAIGAVAAAWLYEYLYLRPLSPEPVGPPETGLDEPGPGRAAAT
Ga0179589_1023496723300024288Vadose Zone SoilAWIWYVGPVAGATLAALAYEYLYLRPPRPLPVGPPDTGVIEPRPGDAAVS
Ga0247666_100704013300024323SoilKHFWIWYIGPFAGAVIAASLYELLYLRPARPEPVGPSETGVEEPGAGEAAIS
Ga0207647_1008590643300025904Corn RhizosphereVYWVGPLIGGGLAALAYDRLYLRPASPEPVGPPETGLDEPGAGEAATL
Ga0207684_1021538543300025910Corn, Switchgrass And Miscanthus RhizospherePISAIGAALAALTYEWLYLRPLSPEVVGPPETGIEEPAAGRAATE
Ga0207671_1093716513300025914Corn RhizosphereAVIAASLYELLYLRPERPTPVGPAESGVEEPGVGRAALS
Ga0207693_1026812933300025915Corn, Switchgrass And Miscanthus RhizosphereIYYLGPALGAVIAALAYEYLYLRPLAPEPVGPPETGIEEPRPGDAAVS
Ga0207649_1011380713300025920Corn RhizosphereYWVGPLLGAGIAALAYHHLYLRTLSLEPPGPPETGLEEPRPGDAASI
Ga0207664_1077948513300025929Agricultural SoilLPISHFWVWYVGPLAGGVIAACVYELLYLRPQRPVPVGPPESGVEEPGAGEAALS
Ga0207640_1128580913300025981Corn RhizosphereVWYVGPLAGGVIAASVYELLYLRPSRPAPVGPPETGVEEPGAGEAALS
Ga0207678_1111491723300026067Corn RhizosphereGPLAGAVIAASLYELLYLRPERPDPVGPPESGVEEPGVGKAALS
Ga0207648_1092390233300026089Miscanthus RhizosphereYLGPAIGAVAAALVYEYLYLRPASPEPVGPPETGVEEPGAGETATA
Ga0209153_109296213300026312SoilWWVWYAGPVVGACVAALTYEWLYLRMRPLPVGPPESGVIEPRPGETAVT
Ga0209801_136422623300026326SoilSWVWYVGPLAGGAIAALLYEALYLGPPKPEPVGPPETGVEEAAPGTAALE
Ga0209577_1068324613300026552SoilSQGWIYWIGPAIGALIAALGYEWLYLRPLAPAVVGPPETGVEEPRPGDAAAG
Ga0209590_1051396323300027882Vadose Zone SoilANCWVWYAGPLVGGAIAALAYEYLYLRPLAPVPVGPPETGVQEPRPGDTAAS
Ga0307309_1018425913300028714SoilAWVWYVGPVIGAVIAVLAYEWLYLRPVEPEPVGPPETGVEEPAPGRAAT
Ga0307298_1014827413300028717SoilGPQLVQNVWGSGWVWYLGPALGGVLAALAYEWLYLRPLSPEPVGPPETGVEEPAPGQAAT
Ga0307298_1027553913300028717SoilYVGPVIGAVIAVLAYEWLYLRPVEPEPVGPPETGVEEPAPGRAAT
Ga0307282_1038347623300028784SoilNGWIWYIGPLIGGGAAALAYEFLYLRPLRPVPVGPPETGIEEPRPGDAAVS
Ga0307323_1008567933300028787SoilAWVWYAGPFIGAALAALVYDTLYLRVQRPLLPVGPPDSGVIEPRPGDTAVS
Ga0307299_1018496423300028793SoilLVGGYWANGWVWYVGPVVGGTIAALLYEWLYLRPLAPVPVGPAETGVLEPRPGDAAAS
Ga0307284_1002408013300028799SoilWVWYAGPFVGGVLAALAYEYLYLRSPRPLPVGPPDSGVIEPRPGDAALS
Ga0307305_1002918813300028807SoilDAWVWYAGPFLGAALAALVYDTLYLRVQRPLLPVGPPDTGVIEPRPGDAAAS
Ga0307305_1051531123300028807SoilVQNVWSNAWVWYVGPAIGAVAAALLYEYLYLRPLSPEPVGPPETGLDEPGPGRAAAT
Ga0307292_1032584613300028811SoilGPFVGGALAALVYDTLYLRSPRPVVPVGPPDTGVIEPRPGDAAVS
Ga0307302_1052943823300028814SoilWSDFWVWYLGPLAGGALAALAYDRLYLRPLAPEPVGPPETGVLEPRPGDAALS
Ga0307296_1062170613300028819SoilWVWYVGPLLGGAAAALAYQWLYLRPGAPGIVSSAEGLDEPRPGDAAAR
Ga0307310_1057873623300028824SoilWTDAWVWYAGPFVGAVLAALAYDTLYLRTRRPLSPVGTPETGVIEPRPGDAALS
Ga0307312_1074209113300028828SoilWTDAWVWYAGPFLGGALAALVYDTLYLRAQRPLLPVGPPDTGVIEPRPGDAAAS
Ga0307312_1111059213300028828SoilWVWYAGPFVGAALAALLYDMLYLRVQKPLLPVGTPETGVIEPRPGDAAVS
Ga0307312_1117878223300028828SoilWAWYVGPFVGGALAALVYDTLYLRTPRPLLPVGPPDSGVAEPRPGDTAAS
Ga0307289_1032283013300028875SoilVGPFAGGVIAAVAYEFLYLRPVAPAVVGPPETGVEEPRPGDTALS
Ga0307277_1003305423300028881SoilAGPIVGAVLAAFAYEWLYLRPPAPVPVGPPETGVLEPRPGDTAVS
Ga0307308_1009625823300028884SoilHWTDAWVWYAGPFVGAVLAALAYDTLYLRTRRPLSPVGTPETGVIEPRPGDAALS
Ga0302179_1032549023300030058PalsaQLVGDHWANGWVWYVGPVLGAAVAGLLYEFLYLRPAASEQTGPPETGVLEPGISSDPAAS
Ga0307408_10070356923300031548RhizosphereWIWYVGPAVGAVAAALAYEHLYLRPLAPVPVGPPETGVEEPRPGDTAAS
Ga0310686_11300355713300031708SoilHWANGWVWYAGPLLGGAVAALLYEFLYLRPVAPEPVGPAETGVREPRPGDAATS
Ga0307407_1078563523300031903RhizosphereDFWVWYIGPFAGAVIAAVVYDLLYLRPPRPVPVGPPETGLEEPRPGDAALE
Ga0308175_10233325323300031938SoilSRHWSDAWVWYAGPLVGGALAALAYEWLYLRPPVPIPVGPPETGVIEPRPGDTAVS
Ga0308176_1192982213300031996SoilGPLAGGVIAASVYELLYLRPSRPAPVGPAETGVEEPGAGEAALS
Ga0307414_1122493813300032004RhizosphereVDRALVGGALAALLYEYLYLRPVSPEPVGPPETGLEEPRPGNAAAM
Ga0310906_1003326953300032013SoilWVWWVGPLVGGALAALLYEYLYLRPVSPEPVGPPETGLDEPVPGDTATT
Ga0334913_082837_521_6763300034172Sub-Biocrust SoilDAWVWYLGPLAGGAAAALLYEALYLRPLRPVPVGPPETGVEEPGAGEAARS


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.