Metagenome / Metatranscriptome Family F036320

Basic Information
Family ID	F036320
Family Type	Metagenome / Metatranscriptome
Number of Sequences	170
Average Sequence Length	51 residues
Representative Sequence	MVSQVNEHLGIPTKHIVEWTQAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQ
Number of Associated Samples	143
Number of Associated Scaffolds	170

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.45 %
% of genes near scaffold ends (potentially truncated)	97.65 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	140
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (92.941 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.294 % of family members)
Environment Ontology (ENVO)	Unclassified (28.235 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.824 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 1JGI12627J18819_102034273 2Ga0062386_1004018903 3Ga0066823_100078321 4Ga0066810_102014761 5Ga0066680_102107381 6Ga0066676_103368311 7Ga0066388_1021798582 8Ga0066388_1025173701 9Ga0070691_103678582 10Ga0070671_1018249701 11Ga0008090_100959921 12Ga0070667_1020886422 13Ga0070714_1010665161 14Ga0070705_1005404302 15Ga0070700_1020188761 16Ga0070708_1001105624 17Ga0070678_1006184791 18Ga0070685_101374262 19Ga0070679_1019714401 20Ga0068853_1010256301 21Ga0070693_1002476352 22Ga0070664_1010659131 23Ga0068852_1013723221 24Ga0068859_1018806562 25Ga0066905_1009767771 26Ga0066905_1018796912 27Ga0068866_106453671 28Ga0066903_1028543623 29Ga0066903_1037290732 30Ga0066903_1042472232 31Ga0066903_1060606632 32Ga0070717_109262302 33Ga0075365_100808141 34Ga0075365_112475351 35Ga0075026_1010821552 36Ga0075362_103237341 37Ga0074048_100581581 38Ga0074060_100111152 39Ga0074062_100282942 40Ga0066653_106297182 41Ga0079221_111710882 42Ga0075428_1002561211 43Ga0075428_1026477632 44Ga0075421_1025420962 45Ga0105251_102304132 46Ga0099828_106414492 47Ga0099827_102915221 48Ga0105250_106212471 49Ga0105247_101569541 50Ga0105243_100538844 51Ga0105238_110244041 52Ga0126380_108453812 53Ga0126380_121663532 54Ga0126384_117873962 55Ga0126382_103757451 56Ga0126373_121893971 57Ga0134070_102851912 58Ga0126376_116178281 59Ga0126376_125149902 60Ga0126372_104581953 61Ga0126372_106359072 62Ga0126372_114235362 63Ga0126378_109640242 64Ga0126378_124359361 65Ga0126378_132965462 66Ga0126379_111166141 67Ga0126379_120698571 68Ga0126379_123210482 69Ga0126381_1011953321 70Ga0126383_103832741 71Ga0126383_122622701 72Ga0126383_125716302 73Ga0134121_102123302 74Ga0151489_10287821 75Ga0105246_104071632 76Ga0105246_106186492 77Ga0137391_112019922 78Ga0137393_113038252 79Ga0137388_110378891 80Ga0137362_114577591 81Ga0150985_1066224835 82Ga0137369_104548652 83Ga0137390_116040491 84Ga0150984_1037595172 85Ga0137397_104721601 86Ga0137407_123589032 87Ga0164300_109560242 88Ga0126369_129559252 89Ga0164308_114170061 90Ga0164304_102816211 91Ga0164306_116896081 92Ga0182041_109604491 93Ga0182041_111513232 94Ga0182038_108744981 95Ga0163161_117431741 96Ga0184634_102413311 97Ga0066667_104035072 98Ga0190269_105223083 99Ga0190270_123634211 100Ga0193756_10426941 101Ga0193755_10776372 102Ga0210404_101285343 103Ga0210384_102850743 104Ga0126371_114097211 105Ga0126371_118697601 106Ga0222623_102160491 107Ga0207644_110011831 108Ga0207668_105983131 109Ga0207981_10591792 110Ga0209590_101658121 111Ga0209275_103378332 112Ga0307276_101820882 113Ga0307299_100738052 114Ga0307296_102547292 115Ga0307310_101221002 116Ga0247826_112193382 117Ga0307501_101776681 118Ga0170824_1281104062 119Ga0307506_103148561 120Ga0170818_1108447382 121Ga0318516_100684961 122Ga0318534_101058192 123Ga0318538_103965381 124Ga0318571_102717321 125Ga0310915_102160112 126Ga0318542_105343872 127Ga0318560_103917522 128Ga0318493_102693731 129Ga0318501_101071172 130Ga0318501_105824362 131Ga0318492_104550211 132Ga0318546_100189614 133Ga0318498_104419302 134Ga0318552_100482693 135Ga0318529_104313842 136Ga0318548_105843972 137Ga0318557_100305483 138Ga0318557_102302712 139Ga0318576_101202501 140Ga0318565_100249611 141Ga0318568_102440172 142Ga0307473_105643162 143Ga0318564_101468022 144Ga0310917_105060221 145Ga0318517_100237461 146Ga0318512_100679741 147Ga0318512_101447612 148Ga0318527_100118824 149Ga0318495_100067671 150Ga0306921_112292772 151Ga0310913_100857663 152Ga0318530_101115902 153Ga0318530_102560731 154Ga0318569_104127851 155Ga0318559_101297822 156Ga0318558_103414082 157Ga0318506_101044891 158Ga0318575_101547701 159Ga0318510_100215591 160Ga0318514_100271131 161Ga0318514_101662422 162Ga0318518_101052101 163Ga0318540_102970471 164Ga0310895_103296351 165Ga0307470_105472472 166Ga0306920_1005501041 167Ga0306920_1034324722 168Ga0306920_1043383811 169Ga0247829_115341392 170Ga0364925_0117318_825_953
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 1JGI12627J18819_102034273 2Ga0062386_1004018903 3Ga0066823_100078321 4Ga0066388_1025173701 5Ga0070691_103678582 6Ga0070671_1018249701 7Ga0066905_1018796912 8Ga0066903_1028543623 9Ga0066903_1060606632 10Ga0079221_111710882 11Ga0075428_1002561211 12Ga0099828_106414492 13Ga0099827_102915221 14Ga0126384_117873962 15Ga0126372_104581953 16Ga0126372_114235362 17Ga0126378_124359361 18Ga0126381_1011953321 19Ga0105246_106186492 20Ga0190269_105223083 21Ga0190270_123634211 22Ga0193756_10426941 23Ga0210404_101285343 24Ga0126371_114097211 25Ga0222623_102160491 26Ga0209275_103378332 27Ga0318571_102717321 28Ga0318501_101071172 29Ga0318546_100189614 30Ga0318552_100482693 31Ga0306921_112292772 32Ga0318575_101547701 33Ga0318518_101052101 34Ga0306920_1043383811 35Ga0364925_0117318_825_953
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. 1Ga0066667_104035072 2Ga0062386_1004018903 3Ga0066388_1025173701 4Ga0066905_1018796912 5Ga0066903_1028543623 6Ga0075026_1010821552 7Ga0066653_106297182 8Ga0079221_111710882 9Ga0075428_1002561211 10Ga0126372_104581953 11Ga0126378_124359361 12Ga0126381_1011953321 13Ga0134121_102123302 14Ga0137393_113038252 15Ga0137388_110378891 16Ga0137397_104721601 17Ga0164306_116896081 18Ga0184634_102413311 19Ga0210384_102850743 20Ga0207981_10591792 21Ga0209275_103378332 22Ga0307296_102547292 23Ga0318557_100305483 24Ga0318512_100679741 25Ga0306921_112292772 26Ga0318518_101052101 27Ga0306920_1043383811 28Ga0364925_0117318_825_953
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.98% β-sheet: 0.00% Coil/Unstructured: 58.02%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Pfam ID	Name	% Frequency in 170 Family Scaffolds
PF07687	M20_dimer	17.65
PF01546	Peptidase_M20	15.29
PF07883	Cupin_2	5.29
PF00528	BPD_transp_1	3.53
PF02776	TPP_enzyme_N	2.94
PF02423	OCD_Mu_crystall	1.76
PF02775	TPP_enzyme_C	1.18

COG ID	Name	Functional Category	% Frequency in 170 Family Scaffolds
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	1.76

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.94 %
Unclassified	root	N/A	7.06 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.94 %
Unclassified	root	N/A	7.06 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.94 %
Unclassified	root	N/A	7.06 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.53 %
Unclassified	root	N/A	7.06 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.41 %
Unclassified	root	N/A	7.06 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.65 %
Unclassified	root	N/A	7.06 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.53 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.53 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.71 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.59 %
Unclassified	root	N/A	7.06 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.53 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.59 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.71 %
Unclassified	root	N/A	7.06 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.53 %
Phyllobacterium zundukense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → Phyllobacterium zundukense	0.59 %
Unclassified	root	N/A	7.06 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.53 %
Phyllobacterium zundukense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → Phyllobacterium zundukense	0.59 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4.71 %
Unclassified	root	N/A	7.06 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10203427	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300004152\|Ga0062386_100401890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1103	Open in IMG/M
3300005163\|Ga0066823_10007832	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300005169\|Ga0066810_10201476	Not Available	500	Open in IMG/M
3300005174\|Ga0066680_10210738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1229	Open in IMG/M
3300005186\|Ga0066676_10336831	All Organisms → cellular organisms → Bacteria → Proteobacteria	1006	Open in IMG/M
3300005332\|Ga0066388_102179858	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300005332\|Ga0066388_102517370	All Organisms → cellular organisms → Bacteria → Proteobacteria	936	Open in IMG/M
3300005341\|Ga0070691_10367858	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300005355\|Ga0070671_101824970	Not Available	540	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.71%
Host-Associated	Host-Associated	15.29%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	2.35%
Plants	Host-Associated → Plants	15.29%
Terrestrial	Environmental → Terrestrial	82.35%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.59%
Freshwater	Environmental → Aquatic → Freshwater	0.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.41%
Roots	Host-Associated → Plants → Roots	1.76%
Sediment	Environmental → Aquatic → Sediment	1.76%
Soil	Environmental → Terrestrial → Soil	81.76%

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Loam	Environmental → Terrestrial → Soil → Loam	11.18%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.53%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.59%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.29%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.35%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.76%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.76%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.59%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.59%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.59%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.18%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.18%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.59%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.76%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.71%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.47%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.59%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Showing 1 to 10 of 143 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_102034273	3300001867	Forest Soil	MISQVNEHLGVPTKHIVEWTQAFVRHPSPQTERFEHEPQVQSFIG
Ga0062386_1004018903	3300004152	Bog Forest Soil	MLDDHRLAVTTSEIVQWTRAFVRRPSPQTERFEHEPQVQSFIGETIVPLLQELSLPWRRD
Ga0066823_100078321	3300005163	Soil	MIRQVNERLGIPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQELGLPWRRDA
Ga0066810_102014761	3300005169	Soil	MANEETGHLSVPTKDIVAWTRAFVRHPSPQTERFEHEPQVQSFIS
Ga0066680_102107381	3300005174	Soil	MVSQVNEHLGVPTKHIVEWTRAFVRHPSPQTERFEHGPQVQSFIGERVVPLV
Ga0066676_103368311	3300005186	Soil	MVSQVNEHLGVPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQELGLPWR
Ga0066388_1021798582	3300005332	Tropical Forest Soil	MVSQVNERLGIPTKHIVEWTQAFVRHPSPQTERFEHEPQVQSFIGGRVV
Ga0066388_1025173701	3300005332	Tropical Forest Soil	MAAQLGIPQDDIVAWTRAFVRHPSPQTEKFEYEPQVQSFIAEQVVPLAAKLGLPARRDQMGNLIVEL
Ga0070691_103678582	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEREPQVQSFIAEQVMPLVQALGLPWRR
Ga0070671_1018249701	3300005355	Switchgrass Rhizosphere	VSEASGHLSVPTNDIVEWTRAFVRHPSPQTERFEHEPQVQ
Ga0008090_100959921	3300005363	Tropical Rainforest Soil	MVSQVNEHLSIPTEHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLV
Ga0070667_1020886422	3300005367	Switchgrass Rhizosphere	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEREPQVQSFIAEQVVPLVQALGLPWRR
Ga0070714_1010665161	3300005435	Agricultural Soil	MISQVNEHLGVPTKHIVEWTRAFVRHPSPQTERFEHEPQV
Ga0070705_1005404302	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEREPQVQSFIA
Ga0070700_1020188761	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAEQVMPLVQALGLPWRR
Ga0070708_1001105624	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MISQVNEHLGGPTKHIVEWTQAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQEL
Ga0070678_1006184791	3300005456	Miscanthus Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAEQVVPLVQALGLPWR
Ga0070685_101374262	3300005466	Switchgrass Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEREPQVQSFI
Ga0070679_1019714401	3300005530	Corn Rhizosphere	VSEADGHLSVATRDIVEWTQAFVRYPSPQTERFEQEPRVQSFIAEQVVPLVQA
Ga0068853_1010256301	3300005539	Corn Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQS
Ga0070693_1002476352	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VSEADGHLSVATRDIIEWTQAFVRHPSPQTERFEREPQVQSFIAEQVVPLVQALGLP
Ga0070664_1010659131	3300005564	Corn Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQ
Ga0068852_1013723221	3300005616	Corn Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFER
Ga0068859_1018806562	3300005617	Switchgrass Rhizosphere	VSEASGHLSVPTNDIVEWTRAFVRHPSPQTERFEHEPQVQRFIAEQVVPLVQ
Ga0066905_1009767771	3300005713	Tropical Forest Soil	MVSQVNERLGIPTKHIVEWTQAFVRHPSPQTERFEHEPQVQSFIGGRVVPLVQELGLPWRRD
Ga0066905_1018796912	3300005713	Tropical Forest Soil	MVSKTEGRLGVPDESIVEWTRAFVRHPSPQTERFEQEPQVQSFIGERVVPLVQ
Ga0068866_106453671	3300005718	Miscanthus Rhizosphere	VSEASGHLSVPTNDIVEWTRAFVRHPSPQTERFEHEPQVQRFIA
Ga0066903_1028543623	3300005764	Tropical Forest Soil	MVSEVNGHLGIPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIADEVVPRVKE
Ga0066903_1037290732	3300005764	Tropical Forest Soil	MVSQVNEHLGIPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIG
Ga0066903_1042472232	3300005764	Tropical Forest Soil	MVSQVNERLGIPTKHIVEWTQAFVRHPSPQTEHFEHEPQVQSFIGGRVVPLVQELGLPWRRDPMGNLLVEL
Ga0066903_1060606632	3300005764	Tropical Forest Soil	MATVSHERLGIATDDIVAWTRAFVRHPSPQTERFEYE
Ga0070717_109262302	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MISQVNEHLGVPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQELGLPWR
Ga0075365_100808141	3300006038	Populus Endosphere	VSEADGHLSVATQDIVEWTQAFVRHPSPQTERFEHEP
Ga0075365_112475351	3300006038	Populus Endosphere	MVSEVNGHLGIPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFI
Ga0075026_1010821552	3300006057	Watersheds	VVSEANGHLSVPTKDIVEWTRAFVRHPSPQTERFEHEPQVQSFIAEQVVPLVQTLGLPWRRDPMGNLLVEL
Ga0075362_103237341	3300006177	Populus Endosphere	VSEADRHLSVATQDIVEWTQAFVRHPSPQTDRFEHEPQVQSFI
Ga0074048_100581581	3300006581	Soil	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQV
Ga0074060_100111152	3300006604	Soil	VSEAEGHLSVATKDIVEWTQAFVRHASPQTGRFEHEPQVQSFIAEQVVPLVQALGLPWRR
Ga0074062_100282942	3300006606	Soil	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAEQVMPLVQALGLPWRR
Ga0066653_106297182	3300006791	Soil	MVSQVNEHLGVPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIADTIAPLLQELALPWRLRL*
Ga0079221_111710882	3300006804	Agricultural Soil	VSPAAANHPQLSVPTEDVVAWTRAFVRHPSPQTEKFEYEPQVQRFI
Ga0075428_1002561211	3300006844	Populus Rhizosphere	MVNEVNAQLSVPTADIVAWARTFVRHPSPQTERFEQEPQVQSFIGEQVVPLVQKL
Ga0075428_1026477632	3300006844	Populus Rhizosphere	VSEADGHLSVATQDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAD
Ga0075421_1025420962	3300006845	Populus Rhizosphere	MVSEVNGHLGIPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIA
Ga0105251_102304132	3300009011	Switchgrass Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAEQVVPLVQALGLPWRRDSMGNLL
Ga0099828_106414492	3300009089	Vadose Zone Soil	MASADPSQLEIPTADIVAWARAFVRHPSPQTERLEQEPQV
Ga0099827_102915221	3300009090	Vadose Zone Soil	MISQVNEHLGVPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQELCLPWWRDARGNLLVERGPERADRSLMLMA
Ga0105250_106212471	3300009092	Switchgrass Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEREPQVQSFIAEQVVPL
Ga0105247_101569541	3300009101	Switchgrass Rhizosphere	VSEADGHLSVATQDIVEWTQAFVRHPSPQTERFEREPQVQSFITEQVVPLVQAFGLPWRRDSMGNLL
Ga0105243_100538844	3300009148	Miscanthus Rhizosphere	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEREPQVQSFITE*
Ga0105238_110244041	3300009551	Corn Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEREPQVQSFIAEQVVPLVQALG
Ga0126380_108453812	3300010043	Tropical Forest Soil	MVSQVNEHLGIPTEHIVEWTRAFVRHPSPQTERFEHEPQVQSF
Ga0126380_121663532	3300010043	Tropical Forest Soil	MMVSKTEGRLGVPDKSIVEWTRAFVRHPSPQTERFEQAPQVQSFIGERVVPLV
Ga0126384_117873962	3300010046	Tropical Forest Soil	MVSQVNEHLSIPTEHIVEWTRAFVRHPSPQTERFEHE
Ga0126382_103757451	3300010047	Tropical Forest Soil	MVSQVNEHLGIPTEHIVEWTRAFVRHPSPQTERFEHE
Ga0126373_121893971	3300010048	Tropical Forest Soil	MVSQVNEHLGIPTEHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQEL
Ga0134070_102851912	3300010301	Grasslands Soil	MVSQVNEHLGVPTKHIVEWTRAFVRHPTPQTERFEHEPQVQSFIGERVVP
Ga0126376_116178281	3300010359	Tropical Forest Soil	MASKTEGRLGVPDKSIVEWTRAFVRHPSPQTERFEQEPQVQSFIGERVVP
Ga0126376_125149902	3300010359	Tropical Forest Soil	MVSQVNEPLSIPTKHIVEWTRAFVRHHSPQTERFEHEPQVQSFIG
Ga0126372_104581953	3300010360	Tropical Forest Soil	MADRNQLGVSTADLVAWTQGFVRHPSPQTERFEQEPQVQSFIGEQVVPLVQ
Ga0126372_106359072	3300010360	Tropical Forest Soil	MVSQVNEHLGIPTKHIVEWTRAFVRHPSPQTEHFEHEPQVQSFIGERVVPLVQELGLPWR
Ga0126372_114235362	3300010360	Tropical Forest Soil	MGNGMAAQLGIPQDDIVAWTRAFVRHPSPQTEKFEYEPQVQSFITEQVV
Ga0126378_109640242	3300010361	Tropical Forest Soil	MMVSKTEGRLGVPDKSIVEWTRAFVRHPSPQTERFEQEPQVQTFIGERVVPLVQELGLP*
Ga0126378_124359361	3300010361	Tropical Forest Soil	MVSEADGRLSIPTADIVEWTRAFVRHPSPQTEHFEQEPQVQSFIGDAVVPLLQRLGLPWRRDPMGNLLVE
Ga0126378_132965462	3300010361	Tropical Forest Soil	MVSQVNKHLSIPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERV
Ga0126379_111166141	3300010366	Tropical Forest Soil	MVSQVNEHLGIPTEHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQELGL
Ga0126379_120698571	3300010366	Tropical Forest Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERVVPLVQELGLPWRRDPMGNLLV
Ga0126379_123210482	3300010366	Tropical Forest Soil	MVSQVNECLGIATKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIG
Ga0126381_1011953321	3300010376	Tropical Forest Soil	MTSAASRHLGVSTEELVAWTQSFVRHPSPQTERFEQEPQVQSLIGETIAPLL
Ga0126383_103832741	3300010398	Tropical Forest Soil	MVSQVNEHLGIPTEHIVEWTRAFVRHPSPQTERFEHEPQV
Ga0126383_122622701	3300010398	Tropical Forest Soil	MVSRVNEHLGIPTEHIVEWTQAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQEL
Ga0126383_125716302	3300010398	Tropical Forest Soil	MMVSKTEGRLGVPDKSIVEWTRAFVRHPSPQTERFEQEPQVQSFIGERVVPLVQE
Ga0134121_102123302	3300010401	Terrestrial Soil	VSEADGHLSVATRDIIEWTQAFVRHPSPQTERFEREPQVQSFIAEQVVPLVQALGLPWRR
Ga0151489_10287821	3300011106	Soil	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFITEQVVPLVQALGLPWRRDPMGNLLVEL
Ga0105246_104071632	3300011119	Miscanthus Rhizosphere	VSEADGHLSVATQDIVEWTQAFVRHPSPQTERFEHEPQV
Ga0105246_106186492	3300011119	Miscanthus Rhizosphere	LSVPTNDIVEWTRAFVRHPSPQTERFEHEPQVQRFIAEQVVPLVQALGLPWRRDPMGNLLVEL
Ga0137391_112019922	3300011270	Vadose Zone Soil	MASADPSQLEIPTADVVEWTRAFVRHPSPQTERFEEEPQVQSF
Ga0137393_113038252	3300011271	Vadose Zone Soil	MVNEVNAHLGIPTADIVAWTQAFVRHPSPQTEHFEQEPQVQSFIGEQVVPLVQKLGL
Ga0137388_110378891	3300012189	Vadose Zone Soil	VGKADHNHLSVPTNDIVEWTRAFARHPSPQTERFEQEPQVQSF
Ga0137362_114577591	3300012205	Vadose Zone Soil	MVSQVNEHVGVPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERV
Ga0150985_1066224835	3300012212	Avena Fatua Rhizosphere	VREADGHLSVATRDIVQWTQAFVRHASPQTERFEHEPQVQSFIAEQVVPLVQALGLPWR
Ga0137369_104548652	3300012355	Vadose Zone Soil	MAVQLGIPQDDIVAWTRAFVRHPSPQTEKFEYEPQVQSFITEQVVPLTAKLVLPARRD
Ga0137390_116040491	3300012363	Vadose Zone Soil	MASADPSQLEIPTADVVEWTRAFVRHPSPQTERFEEEPQ
Ga0150984_1037595172	3300012469	Avena Fatua Rhizosphere	VGEADRHLSVAIQDIVEWTQAFVRHPSPQTERFEHEPQVQ
Ga0137397_104721601	3300012685	Vadose Zone Soil	MASADHSQLEIPTADIVAWTRAFVRHPSPQTERFEQEPQVQSFIGEQVVPLLQKLGLP
Ga0137407_123589032	3300012930	Vadose Zone Soil	MVSQVDEHLGIPTKHIVEWTRAFVRHPSPQTERFEH
Ga0164300_109560242	3300012951	Soil	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAEQVVPLV
Ga0126369_129559252	3300012971	Tropical Forest Soil	MVSQVNERLGIATKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQEL
Ga0164308_114170061	3300012985	Soil	MISQVNERLGVPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFI
Ga0164304_102816211	3300012986	Soil	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFI
Ga0164306_116896081	3300012988	Soil	MISQVNERLGIPTKHIVEWTRVFVRHPSPQTERFEHEPQVQSFIAEQVVPLVQAL
Ga0182041_109604491	3300016294	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERVVP
Ga0182041_111513232	3300016294	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERVVP
Ga0182038_108744981	3300016445	Soil	MVSQVNERLGIATKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERV
Ga0163161_117431741	3300017792	Switchgrass Rhizosphere	VSEASGHLSVPTNDIVEWTRAFVRHPSPQTERFEHEPQVQRFIAEQLVPLVQALGLPWRRDPMGNLL
Ga0184634_102413311	3300018031	Groundwater Sediment	MANEETGHLSVSTKDIVGWTRAFVRHPSPQTERFEHEPQVQSFIAEQVVPLVQSLGLPW
Ga0066667_104035072	3300018433	Grasslands Soil	MVSQVNEHLGIPTKHIVEWTQAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQ
Ga0190269_105223083	3300018465	Soil	MGNHVVSEANGHLSVATKDIVEWTQAFVRHPSPQTGRFEREPQVQSFIAEQVVPLV
Ga0190270_123634211	3300018469	Soil	MANEETRHLSVPTKDIVAWTRAFVRHPSPQTERFEHEPQVQSFISEQVVPL
Ga0193756_10426941	3300019866	Soil	MANEETGHLSVPTKDIVAWTRAFVRHPSPQTERFEHEPQVQSFISEQVLPLAQSLGLPLRRDPMGNLL
Ga0193755_10776372	3300020004	Soil	MANEETGHLSVPTKDIVAWTRAFVRHPSPQTERFEHEPQVQSFISEQV
Ga0210404_101285343	3300021088	Soil	MQAAEGRLTVPAREIVQWARAFVRHPSPQTERFEQEPQVQSFVGEAVVPLVNQLGLPWRRDEM
Ga0210384_102850743	3300021432	Soil	MQAADDRLTVPASEIVQWARAFVRHPSPQTERFEQEPQVQSFVGEAVVPLVNQLGLPWR
Ga0126371_114097211	3300021560	Tropical Forest Soil	MVSEADGRLSIPTADIVEWTRAFVRHPSPQTEHFEQEPQVQSFIGD
Ga0126371_118697601	3300021560	Tropical Forest Soil	MVSQVNEHLGIATKDIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQE
Ga0222623_102160491	3300022694	Groundwater Sediment	MASADHSQLTVPTADMVAWARTFVRHPSPQTERFEQEPQVQSFIGEQVVPLLQKLKLPWRRD
Ga0207644_110011831	3300025931	Switchgrass Rhizosphere	VSEASGHLSVPTNDIVEWTRAFVRHPSPQTERFEHEPQVQRFIAEQVVPLVQALGLPW
Ga0207668_105983131	3300025972	Switchgrass Rhizosphere	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEHE
Ga0207981_10591792	3300027560	Soil	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFVSEAIVPLVNQLGMPSRLDGM
Ga0209590_101658121	3300027882	Vadose Zone Soil	MISQVNEHLGVPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPL
Ga0209275_103378332	3300027884	Soil	MHHADDPRLSVPASEIVKWARAFVRHPSPQTERFEQEPQVQSFVSEAIVPLVNQLGMPS
Ga0307276_101820882	3300028705	Soil	MGNHVVSEANGHLSVPTKDIVEWTRAFVRHPSPQTERFEHEPQVQSFIAEQVVPLVQSLGLPWRRDPMGNLLV
Ga0307299_100738052	3300028793	Soil	MANEETGHLSVSTKDIVGWTRAFVRHPSPQTECFEHEPQVQ
Ga0307296_102547292	3300028819	Soil	VGEADGHLSVATQDIVEWTQAFVRHPSPQTERFEHEPQVQGFIAE
Ga0307310_101221002	3300028824	Soil	VGEADGHLSVATQDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAEEVVPLVQALGLPWR
Ga0247826_112193382	3300030336	Soil	VSEADGHLSVATQDIVEWTQAFVRHPSPQTERFEREPQVQSFITE
Ga0307501_101776681	3300031152	Soil	VREADGHLSVATRDIVQWTQAFVRHASPQTERFEHEPQVQSFIAEQVVPLVQALGLPWRRDSM
Ga0170824_1281104062	3300031231	Forest Soil	MANEETRHLSVPTKDIVAWTRAFVRHPSPQTERFEHEPQVQSFISEQVVPLVQSLG
Ga0307506_103148561	3300031366	Soil	VSEAEGHLSVATKDIVEWTQAFVRHPSPQTERFEREPQVQSFITEQVVPLVQALGLPWRRDSMGNLLVELGPER
Ga0170818_1108447382	3300031474	Forest Soil	MANEETGHLSVPTKDIVAWTRAFVRHPSPQTERFEHEPQVQSFISEQVVPLVQSLG
Ga0318516_100684961	3300031543	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERVVPL
Ga0318534_101058192	3300031544	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERV
Ga0318538_103965381	3300031546	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERVVPL
Ga0318571_102717321	3300031549	Soil	MVSKTEGRLGVPDKSIVEWTRAFVRHPSPQTERFE
Ga0310915_102160112	3300031573	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGE
Ga0318542_105343872	3300031668	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEH
Ga0318560_103917522	3300031682	Soil	MVGQVNEPLGIPTEQIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQALGL
Ga0318493_102693731	3300031723	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPEVQS
Ga0318501_101071172	3300031736	Soil	LAVATSDIVQWTRAFVRHPSPQTERFEHEPQVQSFIGATVIPLLQQLSLPTRREEMGNVLIERG
Ga0318501_105824362	3300031736	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQS
Ga0318492_104550211	3300031748	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQELGLPWRRDPMG
Ga0318546_100189614	3300031771	Soil	MPDDHRLAVATSDIVQWTRAFVRHPSPQTERFEHEPQVQ
Ga0318498_104419302	3300031778	Soil	MPDDHRLAVATSDIVQWTRAFVRHPSPQTERFEHEPQV
Ga0318552_100482693	3300031782	Soil	LAVATSDIVQWTRAFVRHPSPQTERFEHEPQVQSFIGAT
Ga0318529_104313842	3300031792	Soil	MVSQVNEHLRIPTKHIVEWTRAFVRHPSPQTERFEHEPQV
Ga0318548_105843972	3300031793	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHE
Ga0318557_100305483	3300031795	Soil	LAVATSDIVQWTRAFVRHPSPQTERFEHEPQVQSFIGATVIPLLQQLSLPTRRD
Ga0318557_102302712	3300031795	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERVVPLVQELGLPWRRDPMGNLL
Ga0318576_101202501	3300031796	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFI
Ga0318565_100249611	3300031799	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSF
Ga0318568_102440172	3300031819	Soil	LAVATSDIVQWTRAFVRHPSPQTERFEHEPQVQSF
Ga0307473_105643162	3300031820	Hardwood Forest Soil	MVSQVNEHLGVPTKHIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQEL
Ga0318564_101468022	3300031831	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGER
Ga0310917_105060221	3300031833	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERVVPLVQELGLPWRRDPMGNLL
Ga0318517_100237461	3300031835	Soil	MVGQVNEPLGIPTEQIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQALGLPWR
Ga0318512_100679741	3300031846	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGERVGPLVQELGLPWRRDPMGNL
Ga0318512_101447612	3300031846	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIG
Ga0318527_100118824	3300031859	Soil	MVGQVNEPLGIPTEQIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQALSLPWRRDA
Ga0318495_100067671	3300031860	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIGER
Ga0306921_112292772	3300031912	Soil	MQERLDHNPRLAISTSTLVEWTRAFVRHPSPQTELFEREPQVQSFIAERIVPLLQELALPWRRDGMGNVLVELGP
Ga0310913_100857663	3300031945	Soil	MVSKTEGRLGVPDKSIVEWTRAFVRHPSPQTERFEQEPQVQSFIGE
Ga0318530_101115902	3300031959	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHE
Ga0318530_102560731	3300031959	Soil	MVGQVNEHLYIPTKHIVEWTQAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQELGLP
Ga0318569_104127851	3300032010	Soil	MVGQVNEPLGIPTEQIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQALGLPW
Ga0318559_101297822	3300032039	Soil	MVSQVNEHLGIPTKQIVEWTRAFVRHASPQTERFEHEPQV
Ga0318558_103414082	3300032044	Soil	MVGQVNEHLGIPTKQIVEWTQAFVRHPSPQTERFEHEPQVQSFIGERVV
Ga0318506_101044891	3300032052	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSF
Ga0318575_101547701	3300032055	Soil	MVGQVNEHLCIPTKQIVEWMRAFVRHASPQTERFEHEPQVQSFIGERVVPL
Ga0318510_100215591	3300032064	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPEVQSFIGERVVPLVQELGLPWRRDPMGNLLVEL
Ga0318514_100271131	3300032066	Soil	MVGQVNEHLCIPTKQIVEWTRAFVRHASPQTERFEHEPQVQSFIG
Ga0318514_101662422	3300032066	Soil	MVGQVNEPLGIPTEQIVEWTRAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQALGLR
Ga0318518_101052101	3300032090	Soil	VRTIDHPQLVVPTADLVAWTRAFVRHASPQTERFEQEPQVQSFIGEQMAPL
Ga0318540_102970471	3300032094	Soil	MVSQVNEHLGIPTEHIVEWTRAFVRHPSPQTERFEHEPQVQRF
Ga0310895_103296351	3300032122	Soil	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAQQVV
Ga0307470_105472472	3300032174	Hardwood Forest Soil	VSEADGHLSVATKDIVEWTQAFVRHPSPQTERFEHEPQVQSFIAEQV
Ga0306920_1005501041	3300032261	Soil	MVGQVNEHLYIPTKHIVEWTQAFVRHPSPQTERFEHEPQVQSFIGERVVPLVQEL
Ga0306920_1034324722	3300032261	Soil	MVSQVNEHLGIPTEHIVEWTRAFVRHPSPQTERFEHEPQVQRFIGE
Ga0306920_1043383811	3300032261	Soil	MVCVDDNRLSVSTADLIEWTRAFVRHPSPQTERFEQEPQVQSFIGERIVPLAQKLALP
Ga0247829_115341392	3300033550	Soil	VSEADEHLSVATQDIVEWTQAFVRHPSPQTERFEHEPQVQSFITEQVVPLVQALGLP
Ga0364925_0117318_825_953	3300034147	Sediment	LDHEQLDHKQLSLTTADIVEWTRAFVRHASPQTERFEDEPQVQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F036320

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences