Metagenome / Metatranscriptome Family F033995

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F033995
Family Type	Metagenome / Metatranscriptome
Number of Sequences	176
Average Sequence Length	51 residues
Representative Sequence	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Number of Associated Samples	118
Number of Associated Scaffolds	176

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.99 %
% of genes near scaffold ends (potentially truncated)	41.48 %
% of genes from short scaffolds (< 2000 bps)	81.25 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.114 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.046 % of family members)
Environment Ontology (ENVO)	Unclassified (34.659 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (34.659 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 80.00% β-sheet: 0.00% Coil/Unstructured: 20.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 176 Family Scaffolds
PF00563	EAL	7.95
PF03435	Sacchrp_dh_NADP	7.39
PF00482	T2SSF	3.98
PF00082	Peptidase_S8	3.98
PF16653	Sacchrp_dh_C	3.41
PF01741	MscL	2.84
PF00561	Abhydrolase_1	1.70
PF05532	CsbD	1.14
PF10589	NADH_4Fe-4S	1.14
PF00180	Iso_dh	1.14
PF00296	Bac_luciferase	0.57
PF01844	HNH	0.57
PF13456	RVT_3	0.57
PF00990	GGDEF	0.57
PF12681	Glyoxalase_2	0.57
PF01872	RibD_C	0.57
PF07730	HisKA_3	0.57
PF12697	Abhydrolase_6	0.57
PF07690	MFS_1	0.57
PF00171	Aldedh	0.57
PF00782	DSPc	0.57
PF01370	Epimerase	0.57
PF01833	TIG	0.57
PF00580	UvrD-helicase	0.57
PF06067	DUF932	0.57
PF00589	Phage_integrase	0.57
PF13360	PQQ_2	0.57
PF04480	DUF559	0.57
PF00027	cNMP_binding	0.57
PF01738	DLH	0.57
PF14066	DUF4256	0.57
PF13439	Glyco_transf_4	0.57
PF00534	Glycos_transf_1	0.57
PF13519	VWA_2	0.57
PF10706	Aminoglyc_resit	0.57

COG ID	Name	Functional Category	% Frequency in 176 Family Scaffolds
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	7.95
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	7.95
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	7.95
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	7.95
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	2.84
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.14
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.57
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.57
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.57
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.57
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.57
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.57
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.57
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.57
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.57
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.57
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.57
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.57
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.57

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.68 %
Unclassified	root	N/A	44.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.11 %
Unclassified	root	N/A	44.32 %
Viruses	superkingdom	All Organisms → Viruses	0.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.11 %
Unclassified	root	N/A	44.32 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.32 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.57 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	3.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.32 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.43 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	3.98 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.32 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.18 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	3.98 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	1.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.32 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	9.66 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	3.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.14 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.14 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1.14 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.57 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.66 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	3.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.14 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1.14 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples	0.57 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.57 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.57 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.66 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	3.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.14 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1.14 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	0.57 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.57 %
Intrasporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium	0.57 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	0.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.66 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	3.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.14 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1.14 %
Mycolicibacterium xanthum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium xanthum	0.57 %
Intrasporangium oryzae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium oryzae	0.57 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	0.57 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	0.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.57 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16920421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2256	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig70716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	929	Open in IMG/M
2228664021\|ICCgaii200_c0979472	Not Available	797	Open in IMG/M
2228664021\|ICCgaii200_c1026714	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300000443\|F12B_10499831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	767	Open in IMG/M
3300000550\|F24TB_13368644	Not Available	613	Open in IMG/M
3300000890\|JGI11643J12802_10227379	Not Available	583	Open in IMG/M
3300000890\|JGI11643J12802_10856973	Not Available	669	Open in IMG/M
3300000955\|JGI1027J12803_105514646	All Organisms → cellular organisms → Bacteria	2011	Open in IMG/M
3300000956\|JGI10216J12902_100571295	All Organisms → cellular organisms → Bacteria	2231	Open in IMG/M
3300000956\|JGI10216J12902_102271047	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300000956\|JGI10216J12902_106452178	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1552	Open in IMG/M
3300001431\|F14TB_100848700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium xanthum	1380	Open in IMG/M
3300001431\|F14TB_101118255	Not Available	632	Open in IMG/M
3300004114\|Ga0062593_102478737	Not Available	587	Open in IMG/M
3300004463\|Ga0063356_102414796	Not Available	804	Open in IMG/M
3300004463\|Ga0063356_103707457	Not Available	658	Open in IMG/M
3300004479\|Ga0062595_100592990	Not Available	861	Open in IMG/M
3300005093\|Ga0062594_100001997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5144	Open in IMG/M
3300005331\|Ga0070670_101088312	Not Available	729	Open in IMG/M
3300005347\|Ga0070668_100155605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1852	Open in IMG/M
3300005354\|Ga0070675_100051724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3376	Open in IMG/M
3300005444\|Ga0070694_100378402	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300005444\|Ga0070694_100485749	Not Available	981	Open in IMG/M
3300005549\|Ga0070704_100341785	Not Available	1260	Open in IMG/M
3300005577\|Ga0068857_100065698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3227	Open in IMG/M
3300005843\|Ga0068860_100208834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1894	Open in IMG/M
3300005937\|Ga0081455_10008017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11035	Open in IMG/M
3300005937\|Ga0081455_10201444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1490	Open in IMG/M
3300005937\|Ga0081455_10449813	Not Available	880	Open in IMG/M
3300006049\|Ga0075417_10024717	Not Available	2432	Open in IMG/M
3300006049\|Ga0075417_10338355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium oryzae	735	Open in IMG/M
3300006049\|Ga0075417_10699813	Not Available	520	Open in IMG/M
3300006058\|Ga0075432_10447224	Not Available	566	Open in IMG/M
3300006844\|Ga0075428_100236651	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	1970	Open in IMG/M
3300006847\|Ga0075431_102046997	Not Available	527	Open in IMG/M
3300006853\|Ga0075420_100396597	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300006969\|Ga0075419_10151947	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300009081\|Ga0105098_10293779	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300009094\|Ga0111539_10368354	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1672	Open in IMG/M
3300009094\|Ga0111539_11170665	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300009146\|Ga0105091_10035281	Not Available	2192	Open in IMG/M
3300009157\|Ga0105092_10104971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1552	Open in IMG/M
3300009157\|Ga0105092_10612521	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300009157\|Ga0105092_10718208	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	582	Open in IMG/M
3300009168\|Ga0105104_10899091	Not Available	519	Open in IMG/M
3300009545\|Ga0105237_12373879	Not Available	540	Open in IMG/M
3300009553\|Ga0105249_10083666	All Organisms → cellular organisms → Bacteria	2970	Open in IMG/M
3300009789\|Ga0126307_10004299	All Organisms → cellular organisms → Bacteria	9849	Open in IMG/M
3300009801\|Ga0105056_1005920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1263	Open in IMG/M
3300009807\|Ga0105061_1049627	Not Available	639	Open in IMG/M
3300009811\|Ga0105084_1004263	All Organisms → cellular organisms → Bacteria	1952	Open in IMG/M
3300009811\|Ga0105084_1048380	Not Available	751	Open in IMG/M
3300009811\|Ga0105084_1055439	Not Available	706	Open in IMG/M
3300009815\|Ga0105070_1116914	Not Available	534	Open in IMG/M
3300009816\|Ga0105076_1017177	Not Available	1243	Open in IMG/M
3300009817\|Ga0105062_1020134	Not Available	1117	Open in IMG/M
3300009817\|Ga0105062_1040996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	831	Open in IMG/M
3300009817\|Ga0105062_1130076	Not Available	516	Open in IMG/M
3300009821\|Ga0105064_1045573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	840	Open in IMG/M
3300009822\|Ga0105066_1025654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1180	Open in IMG/M
3300009823\|Ga0105078_1003661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1455	Open in IMG/M
3300009823\|Ga0105078_1046438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300009840\|Ga0126313_10144843	All Organisms → cellular organisms → Bacteria	1789	Open in IMG/M
3300010029\|Ga0105074_1059491	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300010041\|Ga0126312_10067249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2413	Open in IMG/M
3300010041\|Ga0126312_10932544	Not Available	633	Open in IMG/M
3300010145\|Ga0126321_1256984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	657	Open in IMG/M
3300010166\|Ga0126306_10404189	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300010362\|Ga0126377_11085632	Not Available	869	Open in IMG/M
3300010362\|Ga0126377_12905989	Not Available	553	Open in IMG/M
3300012021\|Ga0120192_10024352	Not Available	971	Open in IMG/M
3300012204\|Ga0137374_10841401	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300012353\|Ga0137367_10717615	Not Available	696	Open in IMG/M
3300012355\|Ga0137369_10265169	Not Available	1291	Open in IMG/M
3300012358\|Ga0137368_10264987	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300012939\|Ga0162650_100002198	All Organisms → cellular organisms → Bacteria	1990	Open in IMG/M
3300012951\|Ga0164300_11033900	Not Available	531	Open in IMG/M
3300013306\|Ga0163162_12883503	Not Available	553	Open in IMG/M
3300015371\|Ga0132258_12162210	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M
3300015371\|Ga0132258_12556343	Not Available	1276	Open in IMG/M
3300017997\|Ga0184610_1009951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2368	Open in IMG/M
3300017997\|Ga0184610_1142043	Not Available	784	Open in IMG/M
3300017997\|Ga0184610_1190708	Not Available	683	Open in IMG/M
3300018028\|Ga0184608_10001283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7284	Open in IMG/M
3300018028\|Ga0184608_10162668	Not Available	967	Open in IMG/M
3300018031\|Ga0184634_10010198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3324	Open in IMG/M
3300018031\|Ga0184634_10017083	All Organisms → cellular organisms → Bacteria	2694	Open in IMG/M
3300018052\|Ga0184638_1013942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2767	Open in IMG/M
3300018052\|Ga0184638_1206321	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300018053\|Ga0184626_10308796	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300018056\|Ga0184623_10066891	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	1651	Open in IMG/M
3300018072\|Ga0184635_10143350	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300018073\|Ga0184624_10318791	Not Available	696	Open in IMG/M
3300018076\|Ga0184609_10093553	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	1343	Open in IMG/M
3300018076\|Ga0184609_10231229	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300018076\|Ga0184609_10422374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	617	Open in IMG/M
3300018076\|Ga0184609_10478663	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	569	Open in IMG/M
3300018076\|Ga0184609_10480466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300018078\|Ga0184612_10111188	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300018081\|Ga0184625_10012908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3879	Open in IMG/M
3300018081\|Ga0184625_10279068	Not Available	874	Open in IMG/M
3300018081\|Ga0184625_10602812	Not Available	538	Open in IMG/M
3300018466\|Ga0190268_11669218	Not Available	566	Open in IMG/M
3300018469\|Ga0190270_10412277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1255	Open in IMG/M
3300018469\|Ga0190270_10595462	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300018469\|Ga0190270_13001367	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	534	Open in IMG/M
3300018476\|Ga0190274_10004518	All Organisms → cellular organisms → Bacteria	8321	Open in IMG/M
3300018476\|Ga0190274_10146335	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1985	Open in IMG/M
3300018476\|Ga0190274_12380294	Not Available	627	Open in IMG/M
3300019233\|Ga0184645_1353991	Not Available	677	Open in IMG/M
3300019259\|Ga0184646_1207680	Not Available	1047	Open in IMG/M
3300019259\|Ga0184646_1308458	Not Available	615	Open in IMG/M
3300019259\|Ga0184646_1317601	Not Available	831	Open in IMG/M
3300019269\|Ga0184644_1784702	Not Available	619	Open in IMG/M
3300019884\|Ga0193741_1002863	All Organisms → cellular organisms → Bacteria	4823	Open in IMG/M
3300020020\|Ga0193738_1019453	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	2150	Open in IMG/M
3300021073\|Ga0210378_10107742	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300021073\|Ga0210378_10204768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300021951\|Ga0222624_1215940	Not Available	867	Open in IMG/M
3300022195\|Ga0222625_1438656	Not Available	611	Open in IMG/M
3300022195\|Ga0222625_1446584	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300022694\|Ga0222623_10176622	Not Available	830	Open in IMG/M
3300022694\|Ga0222623_10309923	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300022756\|Ga0222622_10111685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1701	Open in IMG/M
3300025908\|Ga0207643_10007183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5978	Open in IMG/M
3300025961\|Ga0207712_10312381	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300026116\|Ga0207674_10157767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2224	Open in IMG/M
3300027006\|Ga0209896_1000366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3719	Open in IMG/M
3300027056\|Ga0209879_1010444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1500	Open in IMG/M
3300027056\|Ga0209879_1017982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1169	Open in IMG/M
3300027163\|Ga0209878_1005169	All Organisms → cellular organisms → Bacteria	1898	Open in IMG/M
3300027379\|Ga0209842_1021283	Not Available	1250	Open in IMG/M
3300027379\|Ga0209842_1040568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	858	Open in IMG/M
3300027577\|Ga0209874_1008664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3034	Open in IMG/M
3300027577\|Ga0209874_1159628	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300027650\|Ga0256866_1212867	Not Available	521	Open in IMG/M
3300027722\|Ga0209819_10218085	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300027722\|Ga0209819_10277847	Not Available	578	Open in IMG/M
3300027873\|Ga0209814_10005645	All Organisms → Viruses → Predicted Viral	4778	Open in IMG/M
3300027873\|Ga0209814_10016789	All Organisms → cellular organisms → Bacteria	2938	Open in IMG/M
3300027880\|Ga0209481_10291105	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300027880\|Ga0209481_10442367	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300027880\|Ga0209481_10732907	Not Available	514	Open in IMG/M
3300027909\|Ga0209382_10348736	All Organisms → cellular organisms → Bacteria	1659	Open in IMG/M
3300028771\|Ga0307320_10269888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300028771\|Ga0307320_10275025	Not Available	666	Open in IMG/M
3300028784\|Ga0307282_10481520	Not Available	602	Open in IMG/M
3300028812\|Ga0247825_11329205	Not Available	526	Open in IMG/M
3300028814\|Ga0307302_10408583	Not Available	671	Open in IMG/M
3300028819\|Ga0307296_10724987	Not Available	543	Open in IMG/M
3300028828\|Ga0307312_10145540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1500	Open in IMG/M
3300028889\|Ga0247827_10229215	Not Available	1045	Open in IMG/M
3300030006\|Ga0299907_10362866	Not Available	1170	Open in IMG/M
3300030006\|Ga0299907_10499927	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300030606\|Ga0299906_10962416	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300030606\|Ga0299906_11372792	Not Available	503	Open in IMG/M
3300030619\|Ga0268386_10136258	Not Available	1879	Open in IMG/M
3300030620\|Ga0302046_10217804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1571	Open in IMG/M
3300030620\|Ga0302046_10644349	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300030829\|Ga0308203_1029889	Not Available	755	Open in IMG/M
3300030829\|Ga0308203_1052432	Not Available	621	Open in IMG/M
3300030829\|Ga0308203_1065447	Not Available	575	Open in IMG/M
3300030830\|Ga0308205_1059224	Not Available	524	Open in IMG/M
3300030902\|Ga0308202_1052527	Not Available	751	Open in IMG/M
3300030902\|Ga0308202_1114351	Not Available	571	Open in IMG/M
3300031731\|Ga0307405_11588232	Not Available	577	Open in IMG/M
3300031892\|Ga0310893_10014785	Not Available	2201	Open in IMG/M
3300032013\|Ga0310906_10064570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1870	Open in IMG/M
3300032075\|Ga0310890_11034266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	662	Open in IMG/M
3300034690\|Ga0364923_0144921	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.55%
Host-Associated	Host-Associated	20.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.98%
Aquatic	Environmental → Aquatic	25.57%
Plants	Host-Associated → Plants	20.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.27%
Sediment	Environmental → Aquatic → Sediment	14.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.64%
Freshwater	Environmental → Aquatic → Freshwater	11.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.82%
Floodplain	Environmental → Terrestrial → Floodplain	1.14%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.20%
Sand	Environmental → Terrestrial → Soil → Sand	13.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	10.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.68%
Loam	Environmental → Terrestrial → Soil → Loam	3.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.27%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.14%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.57%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.20%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	13.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	10.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.84%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.70%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.14%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.57%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.05%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	13.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	12.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.09%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	5.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.11%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.70%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.14%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.14%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.14%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.14%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.14%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.57%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.57%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.57%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027163	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03885240	2088090014	Soil	MIWAILALACIVLGFVGEIIDQRILLGTLEWFVAAIAFNTLGSLPFVKKR
KansclcFeb2_11650640	2124908045	Soil	VITLIWTILGLLCIALGFVGEFIDQKIIIGTLEWFVAAIAFNTLGGLPGVTKRRI
ICCgaii200_09794721	2228664021	Soil	VITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFSKRRG
ICCgaii200_10267143	2228664021	Soil	MIWTILALACIVLGFVGELIDERILFGTLEWFVAAIAFNTLGSLPFVKKR
F12B_104998312	3300000443	Soil	WTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
F24TB_133686442	3300000550	Soil	MGSCGEEVITLIWTILGLLCIVLGFVGELIDERILIGTLEWFVAAIAFNTLGGLPGVVTKRRG*
JGI11643J12802_102273791	3300000890	Soil	MIWAILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLP
JGI11643J12802_108569733	3300000890	Soil	VITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFSKRRG*
JGI1027J12803_1055146463	3300000955	Soil	MIWAILALACIVLGFVGEIIDQRILLGTLEWFVAAIAFNTLGSLPFVKKR*
JGI10216J12902_1005712952	3300000956	Soil	MGSWHREVITLIWTILALVCIVLGFVGELVDQRILMGTLEWFVAAIAFNSLGGLPGVFGKRRG*
JGI10216J12902_1022710471	3300000956	Soil	MVWTVLALACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGSLPFMKKR*
JGI10216J12902_1064521782	3300000956	Soil	MLVTILALACIVLAFVGEIIDQKILLGTLEWFVAAIAFNTLGGLPFMKRR*
F14TB_1008487001	3300001431	Soil	IWAILALACIVLGFVGEVIDERILLGTLEWFVAAIAFNTLGSLPFMKKR*
F14TB_1011182552	3300001431	Soil	IWAILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFAKKR*
Ga0062593_1024787372	3300004114	Soil	MIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
Ga0063356_1024147961	3300004463	Arabidopsis Thaliana Rhizosphere	MIWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
Ga0063356_1037074571	3300004463	Arabidopsis Thaliana Rhizosphere	MIWTILALACIVLGFVGELIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
Ga0062595_1005929901	3300004479	Soil	MIWAILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
Ga0062594_1000019973	3300005093	Soil	MIWTILALACILLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
Ga0070670_1010883122	3300005331	Switchgrass Rhizosphere	PMIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
Ga0070668_1001556052	3300005347	Switchgrass Rhizosphere	VITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0070675_1000517246	3300005354	Miscanthus Rhizosphere	VITLIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFAKRKG*
Ga0070694_1003784022	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VITLIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0070694_1004857491	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
Ga0070704_1003417851	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	TLIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0068857_1000656981	3300005577	Corn Rhizosphere	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAA
Ga0068860_1002088344	3300005843	Switchgrass Rhizosphere	LIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0081455_1000801710	3300005937	Tabebuia Heterophylla Rhizosphere	MGSWHREVITLIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFGKRRG*
Ga0081455_102014442	3300005937	Tabebuia Heterophylla Rhizosphere	MLWTILALACIVLGFVSAIIDERLLIPVITWFLAAIAFNTLGSLPFVKKR*
Ga0081455_104498133	3300005937	Tabebuia Heterophylla Rhizosphere	MLWTILALACIVLGFVSAIIDERVLIPVVAWFLAAIAFNTLGSLPFVKKR*
Ga0075417_100247173	3300006049	Populus Rhizosphere	MLWTLLALLAIILGFVGEVIDEKILMATLEWFVLAIALNTLGALPFGGTVTKRS*
Ga0075417_103383553	3300006049	Populus Rhizosphere	VITLIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFN
Ga0075417_106998132	3300006049	Populus Rhizosphere	LIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFSKRRG*
Ga0075432_104472241	3300006058	Populus Rhizosphere	MLWTLLALLAIILGFVGEVIDEKILMATLEWFVLAIALNTLGALPFGGTV
Ga0075428_1002366512	3300006844	Populus Rhizosphere	MVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0075431_1020469972	3300006847	Populus Rhizosphere	VTRGGDPMVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0075420_1003965972	3300006853	Populus Rhizosphere	GYPGVTRGGDPMVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0075419_101519471	3300006969	Populus Rhizosphere	PMVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0105098_102937792	3300009081	Freshwater Sediment	MVWTILGLGCIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFMKKR*
Ga0111539_103683544	3300009094	Populus Rhizosphere	YGEVITLIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0111539_111706653	3300009094	Populus Rhizosphere	VITLIWTILALVCIVLGFVGELVDERILMGTLEWFVAA
Ga0105091_100352812	3300009146	Freshwater Sediment	MVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFMKKR*
Ga0105092_101049713	3300009157	Freshwater Sediment	VVTLIWTILALVCIVLGFVGELVDERILLGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0105092_106125211	3300009157	Freshwater Sediment	MVWTILGLACIVLAFIGEIIDERILLGTLEWFVAAIAFNTLGALPF
Ga0105092_107182082	3300009157	Freshwater Sediment	MVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKK
Ga0105092_109685912	3300009157	Freshwater Sediment	AFVGEIIDERILLGTLEWFVAAIAFNTLGALPFMKKR*
Ga0105104_108990911	3300009168	Freshwater Sediment	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGALPFMKKR*
Ga0105237_123738792	3300009545	Corn Rhizosphere	AAYGEVITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0105249_100836663	3300009553	Switchgrass Rhizosphere	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIALNTLGSLPFVKKR*
Ga0126307_1000429912	3300009789	Serpentine Soil	MLWTILGLACIVLAFIGEIVDERLLLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0105056_10059201	3300009801	Groundwater Sand	VITLIWTILGLLCIALGFVGELIDEKIIIGTLEWFVAAIAFNTLGGLPGVTKRRV*
Ga0105061_10496271	3300009807	Groundwater Sand	MVWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0105084_10042632	3300009811	Groundwater Sand	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSVPFVKKR*
Ga0105084_10483801	3300009811	Groundwater Sand	VITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFGKRRG*
Ga0105084_10554391	3300009811	Groundwater Sand	MVWTILGLACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGSLPFMKKR*
Ga0105084_11065442	3300009811	Groundwater Sand	GEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR*
Ga0105070_11169142	3300009815	Groundwater Sand	VITLIWTILALVCIVLAFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGV
Ga0105076_10171772	3300009816	Groundwater Sand	AAPQEVITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0105062_10201341	3300009817	Groundwater Sand	LIWTILALVCIVLGFVGELIDEKILMGTLEWFVAAIAFNSLGGLPGVFGKRRG*
Ga0105062_10409962	3300009817	Groundwater Sand	CIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGSVPFVKKR*
Ga0105062_11300761	3300009817	Groundwater Sand	MLWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFMKKR*
Ga0105064_10455731	3300009821	Groundwater Sand	VVTLIWTILGLLCIALGFVGELIDEKIIIGTLEWFVAAIAFNTLGGLPGVTKRRV*
Ga0105066_10256543	3300009822	Groundwater Sand	VITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPG
Ga0105078_10036613	3300009823	Groundwater Sand	VITLIWTILALVCIVLGFVGELIDEKILMGTLEWFVAAIAFNSLGGLPGVFGKRRG*
Ga0105078_10464381	3300009823	Groundwater Sand	VITLIWTILGLLCIALGFVGELIDEKIIIGTLEWFVAAIAFNTLGGFPGVTKRRD*
Ga0126313_101448433	3300009840	Serpentine Soil	MLWTILGLACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0105074_10594912	3300010029	Groundwater Sand	VTRGGDPMIWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0126315_103775734	3300010038	Serpentine Soil	AFVGEIVDERLLLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0126312_100672494	3300010041	Serpentine Soil	VHGLLIVGEGVITLIWTILGLLCIALGFVGELIDEKIIIGTSEWFVAAIAFNTLGGLPGVTKRRV*
Ga0126312_109325442	3300010041	Serpentine Soil	MLWTILGLACIVLAFVGEVVDQKLLLGTLEWFVAAIAFNTLGAL
Ga0126321_12569842	3300010145	Soil	MGSCGGEVIILIWTILGLLCIVLGFVGEIIDEKILIGTLEWFVAAIAFNTLGGLPGVCTKRRG*
Ga0126306_104041893	3300010166	Serpentine Soil	MLWTILGLACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGALPFVRKR*
Ga0126377_110856322	3300010362	Tropical Forest Soil	MVWTILALGCIVLGFVSAMIDERLLIPVIAWFLAAIAFNTLGSLPFVKKR*
Ga0126377_129059891	3300010362	Tropical Forest Soil	LTGEVIRLLWTILALACIVLGFVSALIDERLLIPVITWFIAAIAFNTLGSLPFMKKR*
Ga0120192_100243522	3300012021	Terrestrial	LVDGYVRVRRGGDPMLWTILGLACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0137374_108414012	3300012204	Vadose Zone Soil	VITITLIWTILGLLCIALGFVGELIDEKIIIGTLEWFVAAIAFNTLGGLPGVTKRRV*
Ga0137367_107176152	3300012353	Vadose Zone Soil	LIWTILALLCIVLGFVGEVIDEKILMGTLEWFVAAIAFNTLGGLPGVFTKRRG*
Ga0137369_102651691	3300012355	Vadose Zone Soil	MLWTILALACIVLAFVGEILDERTLLGTLEWLVAAIAFNTLGALPFVKKR*
Ga0137368_102649872	3300012358	Vadose Zone Soil	VITITLIWTILGLLCIALGFIGELIGEKIIIGTLEWFVAAIAFNTLGGLPGVTKRRV*
Ga0162650_1000021982	3300012939	Soil	MVWTILALVCIVFAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR*
Ga0164300_110339001	3300012951	Soil	VRPVEGRYPMLWTVLALACIVLAFIGAIVDGRLLLGTLEWFVAAIAFNTLGSLPFMKKR*
Ga0163162_128835031	3300013306	Switchgrass Rhizosphere	VITLIWTILALVCIVLGFVGELVDEKVLMGTLEWFVAAIAFNSLGGLP
Ga0132258_121622103	3300015371	Arabidopsis Rhizosphere	VITLIWTILALLCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFAKRRG*
Ga0132258_125563432	3300015371	Arabidopsis Rhizosphere	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLSSLPFVRKR*
Ga0184610_10099512	3300017997	Groundwater Sediment	MIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0184610_11420432	3300017997	Groundwater Sediment	MVWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184610_11907082	3300017997	Groundwater Sediment	MVWTILALACIVLGFVGEIIDERILFGTLEWFVAAIAFNTLGALPFMKKR
Ga0184608_100012834	3300018028	Groundwater Sediment	MIWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184608_101626682	3300018028	Groundwater Sediment	VITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0184634_100101984	3300018031	Groundwater Sediment	MGTARDEGGDPMIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKK
Ga0184634_100170833	3300018031	Groundwater Sediment	MIWTILALACMVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184638_10139424	3300018052	Groundwater Sediment	MVWTILGLACIVLAFIGEIVDERLLLGTLEWFVAAIAFNTLGSLPFMKKR
Ga0184638_12063211	3300018052	Groundwater Sediment	RGGDPMVWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184626_103087962	3300018053	Groundwater Sediment	MVWTILALACIVFGFVGEIIDERILFGTLEWFVAAIAFNTLGALPFMKKR
Ga0184623_100668912	3300018056	Groundwater Sediment	MVWTILGLACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFMKKR
Ga0184635_101433501	3300018072	Groundwater Sediment	MIWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLG
Ga0184624_103187911	3300018073	Groundwater Sediment	MIWTILALACIVLAFVGEIIDERILLGTLDWFVAAIAFNTLGSLPFVKKR
Ga0184609_100935532	3300018076	Groundwater Sediment	LGDGYVRVTRGGDPMVWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184609_102312292	3300018076	Groundwater Sediment	MVWTILALACIVLAFVGEIIDERILLGSLEWFVAAIAFNTLGALPFVKKR
Ga0184609_104223742	3300018076	Groundwater Sediment	MLWTILALACIVLGFVGEIIDERILLGTLEWFVAAIA
Ga0184609_104786631	3300018076	Groundwater Sediment	MIWTILALACIVLAFVGEIIDERILLGTLEWFVAA
Ga0184609_104804662	3300018076	Groundwater Sediment	MIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAF
Ga0184612_101111882	3300018078	Groundwater Sediment	LGDGYVGVRRGGDPMVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184625_100129082	3300018081	Groundwater Sediment	MVWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184625_102790681	3300018081	Groundwater Sediment	MIWAILALACIVLGFVGEIIDERILLGTLAWFVAALAFSPLGSLPFVKKR
Ga0184625_106028121	3300018081	Groundwater Sediment	MIWTILALACIVFGFVGEIIDERILLGTLEWFVAAI
Ga0190268_116692182	3300018466	Soil	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFMKKR
Ga0190270_104122772	3300018469	Soil	MGSCDEEVITLIWTILGLLCIVLGFVGELIDQRILIGTLEWFVAAIAFNTLGGLPGVTKRRV
Ga0190270_105954621	3300018469	Soil	PPGLGRSGAGYAGVTGGGDPMVWTILGLACIVLAFVGEIIDERVLLGTLEWFVAAIAFNTLGALPFVKKR
Ga0190270_130013672	3300018469	Soil	MVWTILGLTCIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKK
Ga0190274_1000451813	3300018476	Soil	MVWTILGLACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGSLPFMKKR
Ga0190274_101463351	3300018476	Soil	MLWTILGLACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGALPFVKKR
Ga0190274_123802942	3300018476	Soil	GLACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184645_13539912	3300019233	Groundwater Sediment	ACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184646_12076802	3300019259	Groundwater Sediment	TILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0184646_13084582	3300019259	Groundwater Sediment	GDPMVWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0184646_13176011	3300019259	Groundwater Sediment	EGGDPMIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0184644_17847022	3300019269	Groundwater Sediment	LACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0193741_10028633	3300019884	Soil	MVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFMKKR
Ga0193738_10194532	3300020020	Soil	LGRLGVGYLCVTRGGDPMIWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGNLPFVKKR
Ga0210378_101077422	3300021073	Groundwater Sediment	MLWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0210378_102047682	3300021073	Groundwater Sediment	MIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSL
Ga0222624_12159401	3300021951	Groundwater Sediment	PMIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0222625_14386561	3300022195	Groundwater Sediment	DPMVWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0222625_14465841	3300022195	Groundwater Sediment	ILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0222623_101766223	3300022694	Groundwater Sediment	MLWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0222623_103099232	3300022694	Groundwater Sediment	MGTCGVTRGGDLMVWTILALACIVLAFVGEIIDERILLGSLEWFVAAIAFNTLGALPFVKKR
Ga0222622_101116852	3300022756	Groundwater Sediment	MGTACDEGGDPMIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKK
Ga0207643_100071837	3300025908	Miscanthus Rhizosphere	MIWTILALACILLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0207650_111684201	3300025925	Switchgrass Rhizosphere	VGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0207712_103123811	3300025961	Switchgrass Rhizosphere	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0207674_101577671	3300026116	Corn Rhizosphere	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFV
Ga0209896_10003667	3300027006	Groundwater Sand	VITLIWTILGLLCIALGFVGELIDEKIIIGTLEWFVAAIAFNTLGGLPGVTKRRV
Ga0209879_10104442	3300027056	Groundwater Sand	MIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSVPFVKKR
Ga0209879_10179821	3300027056	Groundwater Sand	VITLIWTILALVCIVLGFVGELIDEKILMGTLEWFVAAIAFNSLGGLPGVFGKRRG
Ga0209878_10051691	3300027163	Groundwater Sand	LIWTILGLLCIALGFVGELIDEKIIIGTLEWFVAAIAFNTLGGLPGVTKRRV
Ga0209842_10212833	3300027379	Groundwater Sand	MLWTVLALACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGSLPFMKKR
Ga0209842_10405681	3300027379	Groundwater Sand	LGLGRLGNGYVRVTRGGDPMIWTILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSVPFVKKR
Ga0209874_10086645	3300027577	Groundwater Sand	MIWAILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSVPFVKKR
Ga0209874_11596282	3300027577	Groundwater Sand	IGNGYVGVRRGGDPMVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0256866_12128672	3300027650	Soil	MVWTILGLACIVLAFVGEVIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0209819_102180851	3300027722	Freshwater Sediment	MVWTILGLACIVLAFIGEIIDERILLGTLEWFVAAIAFNTLGALP
Ga0209819_102778472	3300027722	Freshwater Sediment	MVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0209814_100056454	3300027873	Populus Rhizosphere	MLWTLLALLAIILGFVGEVIDEKILMATLEWFVLAIALNTLGALPFGGTVTKRS
Ga0209814_100167894	3300027873	Populus Rhizosphere	VITLIWTILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0209481_102911052	3300027880	Populus Rhizosphere	MVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIA
Ga0209481_104423673	3300027880	Populus Rhizosphere	VITLIWTILALVCIVLGFVGELVDERILMGTLEWFVAAI
Ga0209481_107329071	3300027880	Populus Rhizosphere	TILALVCIVLGFVGELVDERILMGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0209382_103487361	3300027909	Populus Rhizosphere	GVTRGGDPMVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0307320_102698882	3300028771	Soil	MIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKK
Ga0307320_102750251	3300028771	Soil	WTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0307282_104815201	3300028784	Soil	LGDGYVLVRRGGDPMIWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGSL
Ga0247825_113292051	3300028812	Soil	VITLIWTILALVCIVLGFVGELVDEKILLGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0307302_104085832	3300028814	Soil	TILALACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0307296_107249871	3300028819	Soil	MIWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGSL
Ga0307312_101455401	3300028828	Soil	LGDGYVLVRRGGDPMIWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0247827_102292151	3300028889	Soil	HEEVITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0299907_103628662	3300030006	Soil	MVRTFLALACIVLGFVVEIIDERILLGTLEWFVAAIAFNTLGT
Ga0299907_104999271	3300030006	Soil	AGYVGVARGGDPMVWTILGLACIVLAFVGEVIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0299906_109624162	3300030606	Soil	MVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVK
Ga0299906_113727921	3300030606	Soil	SGAGYVGVTRGGDPMVWTILGLACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0268386_101362583	3300030619	Soil	MVRTFLALACIVLGFVVEIIDERILLGTLEWFVAAIAFNTLGTLPFVKKR
Ga0302046_102178044	3300030620	Soil	MLWTILGLACIVLAFVGEIVDERLLLGTLEWFVAAIAFNTLGSLPFMKKR
Ga0302046_106443492	3300030620	Soil	MVWTILGLACIVLGFVGEIIDERILLGTLEWFVAAIAFNTLGALPFMKKR
Ga0308203_10298891	3300030829	Soil	IWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0308203_10524321	3300030829	Soil	APDEGGDPMIWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0308203_10654471	3300030829	Soil	ITLIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0308205_10592241	3300030830	Soil	LALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0308202_10525271	3300030902	Soil	LIWTILALVCIVLGFVGELVDEKILMGTLEWFVAAIAFNSLGGLPGVFAKRRG
Ga0308202_11143511	3300030902	Soil	PMVWTILALACIVFGFVGEIIDERILLGTLEWFVAAIAFNTLGSLPFVKKR
Ga0307405_115882321	3300031731	Rhizosphere	ILGLACIVLAFIGEIVDERLLLGTLEWFVAAIAFNTLGALPFVKKR
Ga0310893_100147854	3300031892	Soil	MLWTVLALACIVLAFIGEIVDERLLLGTLEWFVAAIAFNTL
Ga0310906_100645703	3300032013	Soil	MLWTVLALACIVLAFIGEIVDERLLLGTLEWFVAAIAFNTLGSLPFMKKR
Ga0310890_110342663	3300032075	Soil	MLWTVLALACIVLAFIGEIVDERLLLGTLEWFLAAIAFNTLGSLPFMKKR
Ga0364929_0141517_658_777	3300034149	Sediment	VLAFVGEIIDERILLGTLEWFVAAIAFNTLGALPFVKKR
Ga0364923_0144921_119_271	3300034690	Sediment	MIWTILALACIVLAFVGEIIDERILLGTLEWFVAAIAFNTLGNLPFVKKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F033995

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences