Metagenome Family F031762

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F031762
Family Type	Metagenome
Number of Sequences	181
Average Sequence Length	41 residues
Representative Sequence	MHKPLRHIEDPVTSVVALLVWAALGFLGLLVLMLTLALGF
Number of Associated Samples	56
Number of Associated Scaffolds	181

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	93.07 %
% of genes near scaffold ends (potentially truncated)	3.87 %
% of genes from short scaffolds (< 2000 bps)	43.09 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (54.696 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (60.221 % of family members)
Environment Ontology (ENVO)	Unclassified (62.431 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.508 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.18% β-sheet: 0.00% Coil/Unstructured: 58.82%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 181 Family Scaffolds
PF04542	Sigma70_r2	12.71
PF10099	RskA	9.94
PF04545	Sigma70_r4	6.63
PF13490	zf-HC2	6.08
PF14026	DUF4242	4.42
PF00583	Acetyltransf_1	1.10
PF13581	HATPase_c_2	1.10
PF13473	Cupredoxin_1	0.55
PF13340	DUF4096	0.55
PF07883	Cupin_2	0.55
PF00069	Pkinase	0.55
PF13358	DDE_3	0.55
PF00355	Rieske	0.55
PF12146	Hydrolase_4	0.55
PF00872	Transposase_mut	0.55
PF01710	HTH_Tnp_IS630	0.55
PF04029	2-ph_phosp	0.55
PF08281	Sigma70_r4_2	0.55
PF00581	Rhodanese	0.55
PF06441	EHN	0.55

COG ID	Name	Functional Category	% Frequency in 181 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	12.71
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	12.71
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	12.71
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	12.71
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.21
COG2045	Phosphosulfolactate phosphohydrolase or related enzyme	Coenzyme transport and metabolism [H]	1.10
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.55
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.55
COG3415	CRISPR-associated protein Csa3, CARF domain	Defense mechanisms [V]	0.55

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
All Organisms	root	All Organisms	45.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
cellular organisms	root	All Organisms → cellular organisms	45.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	43.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	39.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	39.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	39.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	5.52 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Rubrobacter xylanophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	4.97 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	4.42 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_119901005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	808	Open in IMG/M
3300004081\|Ga0063454_100618999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	796	Open in IMG/M
3300005562\|Ga0058697_10114338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1137	Open in IMG/M
3300005562\|Ga0058697_10161122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	987	Open in IMG/M
3300005562\|Ga0058697_10195121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	914	Open in IMG/M
3300005562\|Ga0058697_10255496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	818	Open in IMG/M
3300005562\|Ga0058697_10266752	Not Available	804	Open in IMG/M
3300005562\|Ga0058697_10273473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	796	Open in IMG/M
3300006046\|Ga0066652_101041516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	776	Open in IMG/M
3300007790\|Ga0105679_10539881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1496	Open in IMG/M
3300009789\|Ga0126307_10002034	All Organisms → cellular organisms → Bacteria	13564	Open in IMG/M
3300009789\|Ga0126307_10002320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12828	Open in IMG/M
3300009789\|Ga0126307_10026763	All Organisms → cellular organisms → Bacteria	4413	Open in IMG/M
3300009789\|Ga0126307_10041076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	3591	Open in IMG/M
3300009789\|Ga0126307_10092726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2389	Open in IMG/M
3300009789\|Ga0126307_10108806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2201	Open in IMG/M
3300009789\|Ga0126307_10123500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2063	Open in IMG/M
3300009789\|Ga0126307_10314501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1260	Open in IMG/M
3300009789\|Ga0126307_10392503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1119	Open in IMG/M
3300009789\|Ga0126307_10854057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	735	Open in IMG/M
3300009840\|Ga0126313_10011445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5625	Open in IMG/M
3300009840\|Ga0126313_10102082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2111	Open in IMG/M
3300009840\|Ga0126313_10110531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2034	Open in IMG/M
3300009840\|Ga0126313_10168766	Not Available	1664	Open in IMG/M
3300009840\|Ga0126313_10179521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1616	Open in IMG/M
3300009840\|Ga0126313_10209365	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1499	Open in IMG/M
3300009840\|Ga0126313_10976848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	693	Open in IMG/M
3300009840\|Ga0126313_11183580	Not Available	630	Open in IMG/M
3300010036\|Ga0126305_10003899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	7029	Open in IMG/M
3300010036\|Ga0126305_10017250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3738	Open in IMG/M
3300010036\|Ga0126305_10024378	Not Available	3228	Open in IMG/M
3300010036\|Ga0126305_10025143	All Organisms → cellular organisms → Bacteria	3186	Open in IMG/M
3300010036\|Ga0126305_10284984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1069	Open in IMG/M
3300010036\|Ga0126305_10580747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	752	Open in IMG/M
3300010036\|Ga0126305_10599464	Not Available	740	Open in IMG/M
3300010036\|Ga0126305_10652166	Not Available	710	Open in IMG/M
3300010036\|Ga0126305_10715514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	678	Open in IMG/M
3300010036\|Ga0126305_11041540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	562	Open in IMG/M
3300010036\|Ga0126305_11147604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	536	Open in IMG/M
3300010036\|Ga0126305_11230299	Not Available	517	Open in IMG/M
3300010036\|Ga0126305_11269227	Not Available	508	Open in IMG/M
3300010037\|Ga0126304_10292769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1077	Open in IMG/M
3300010037\|Ga0126304_10577154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	757	Open in IMG/M
3300010038\|Ga0126315_10665265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	677	Open in IMG/M
3300010039\|Ga0126309_10228997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1043	Open in IMG/M
3300010039\|Ga0126309_10447462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	784	Open in IMG/M
3300010039\|Ga0126309_10805314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	614	Open in IMG/M
3300010040\|Ga0126308_10211823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1248	Open in IMG/M
3300010040\|Ga0126308_10212633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1246	Open in IMG/M
3300010040\|Ga0126308_10219060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1229	Open in IMG/M
3300010040\|Ga0126308_10307432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1043	Open in IMG/M
3300010040\|Ga0126308_10452044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	863	Open in IMG/M
3300010040\|Ga0126308_10476298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	841	Open in IMG/M
3300010040\|Ga0126308_10687168	Not Available	703	Open in IMG/M
3300010040\|Ga0126308_11087995	Not Available	563	Open in IMG/M
3300010040\|Ga0126308_11219520	Not Available	533	Open in IMG/M
3300010041\|Ga0126312_10020218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4447	Open in IMG/M
3300010041\|Ga0126312_10346838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1052	Open in IMG/M
3300010042\|Ga0126314_10765648	Not Available	709	Open in IMG/M
3300010042\|Ga0126314_11232815	Not Available	559	Open in IMG/M
3300010044\|Ga0126310_10004483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5936	Open in IMG/M
3300010044\|Ga0126310_10027091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2962	Open in IMG/M
3300010044\|Ga0126310_10049632	All Organisms → cellular organisms → Bacteria	2322	Open in IMG/M
3300010044\|Ga0126310_10209373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1289	Open in IMG/M
3300010044\|Ga0126310_10270127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1156	Open in IMG/M
3300010044\|Ga0126310_10304844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1098	Open in IMG/M
3300010044\|Ga0126310_10616033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	811	Open in IMG/M
3300010045\|Ga0126311_10074264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2264	Open in IMG/M
3300010045\|Ga0126311_10340545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1140	Open in IMG/M
3300010166\|Ga0126306_10203155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1497	Open in IMG/M
3300010166\|Ga0126306_10815555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	753	Open in IMG/M
3300012939\|Ga0162650_100100462	Not Available	510	Open in IMG/M
3300014487\|Ga0182000_10050117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1247	Open in IMG/M
3300014497\|Ga0182008_10036202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2470	Open in IMG/M
3300018465\|Ga0190269_10110281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1363	Open in IMG/M
3300018465\|Ga0190269_10363076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	877	Open in IMG/M
3300018920\|Ga0190273_10250745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1148	Open in IMG/M
3300019767\|Ga0190267_10215807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	915	Open in IMG/M
3300019767\|Ga0190267_11433752	Not Available	527	Open in IMG/M
3300025944\|Ga0207661_10804006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	866	Open in IMG/M
3300027809\|Ga0209574_10041115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1145	Open in IMG/M
3300028705\|Ga0307276_10019122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1324	Open in IMG/M
3300028722\|Ga0307319_10280131	Not Available	551	Open in IMG/M
3300028744\|Ga0307318_10311421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	552	Open in IMG/M
3300028754\|Ga0307297_10001670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	5315	Open in IMG/M
3300028754\|Ga0307297_10014255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2156	Open in IMG/M
3300028778\|Ga0307288_10020455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2118	Open in IMG/M
3300030513\|Ga0268242_1028096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	983	Open in IMG/M
3300030514\|Ga0268253_10044593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1146	Open in IMG/M
3300031548\|Ga0307408_101291461	Not Available	684	Open in IMG/M
3300031548\|Ga0307408_101366728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	666	Open in IMG/M
3300031824\|Ga0307413_11091356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	689	Open in IMG/M
3300031901\|Ga0307406_10220710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1409	Open in IMG/M
3300031903\|Ga0307407_10627402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	803	Open in IMG/M
3300032002\|Ga0307416_102101314	Not Available	667	Open in IMG/M
3300032126\|Ga0307415_101725679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	604	Open in IMG/M
3300032159\|Ga0268251_10123258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	950	Open in IMG/M
3300032159\|Ga0268251_10239661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	728	Open in IMG/M
3300032159\|Ga0268251_10261158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	704	Open in IMG/M
3300034377\|Ga0334931_172710	Not Available	525	Open in IMG/M
3300034391\|Ga0334917_008884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1478	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.66%
Host-Associated	Host-Associated	19.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.66%
Plants	Host-Associated → Plants	19.34%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.11%
Phylloplane	Host-Associated → Plants → Phylloplane	10.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.73%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.10%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.69%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	10.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.73%
Loam	Environmental → Terrestrial → Soil → Loam	2.21%
Sand	Environmental → Terrestrial → Soil → Sand	1.66%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.10%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.55%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	72.38%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	10.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.76%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.66%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.66%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.10%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.55%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.55%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.55%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	60.22%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	10.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	7.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.66%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.66%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.10%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.55%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	0.55%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.55%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300030513	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M
3300034391	Biocrust microbial communities from Mojave Desert, California, United States - 13HMC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00128540	2140918013	Soil	VHKPLRHIEDPLTSVVALLIWAALGFLSLLVVMLTLAFGF
ICChiseqgaiiDRAFT_24422643	3300000033	Soil	MHKPLRHIEDPVTSVVALLXWAALGFLGLLVLMLTLALGF*
ICChiseqgaiiDRAFT_24423053	3300000033	Soil	VHKPLRHXEDPLTSVVALLIWAALGFLSLLVVMLTLAFGF*
INPhiseqgaiiFebDRAFT_1013629282	3300000364	Soil	VHKPLRHIEDPLTSVVALLIWAALGFLSLLVVMLTLAFGF*
C688J35102_1199010052	3300002568	Soil	MQQPPGHIEDTVTSVVVLLVFGTMGLFGLVVLLLALALGF*
C688J35102_1209849819	3300002568	Soil	MRQPTRHVEDSVASAVALIVWAALGLLGLLSLALTLAIGV*
Ga0058689_100212583	3300004016	Agave	LHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLAIGF*
Ga0063454_1006189992	3300004081	Soil	MQQPLRHIGDTVTSVVVLLVFGTMGLFGLVVLLLALALGF*
Ga0058697_101096532	3300005562	Agave	MRQPPRHIDDPVTSVIALLISAALGFLGLLVLMLTLALGL*
Ga0058697_101143382	3300005562	Agave	MRQALRHIEDTVTSVIALLALGVVGFFGLVVVLLTLALGF*
Ga0058697_101611222	3300005562	Agave	MRQPLRHIEDTVTSIVALLALGVVGFFGLVVLMLALALGF*
Ga0058697_101951212	3300005562	Agave	MQQPLRHIEDTVTSIVALLALGVVGFFGLVVLLLTLALGF*
Ga0058697_102554964	3300005562	Agave	QRREKMRQPLRHIEDTLTSIVTLLALGVVGFFGLVVLMLTLALGF*
Ga0058697_102667521	3300005562	Agave	MRQPLRHIEDPITSVVTLLVLGAVGFFVLVVLMLTLALGF*
Ga0058697_102734732	3300005562	Agave	MRQPLRHIEDTVTSVVALLTLGVVGFFGLVVLGLMLALGF*
Ga0058697_105557841	3300005562	Agave	LHKPLRHIEDPVTSIVALLVWVALGFLGILVLMLTLAIGF*
Ga0058697_105840522	3300005562	Agave	MRQPIRHVEDPVTSVVALLVWAALGFVGLLVLALVLALGLYSVLR*
Ga0066652_1010415162	3300006046	Soil	MRQPLRHIEDTLTSMVALLALGVVGFFGLVVLMLTLALGF*
Ga0105679_102909173	3300007790	Soil	MHKPLRHVEDPVTSIVALLVSVAFGFLGLLVLMLTLALGF*
Ga0105679_105398812	3300007790	Soil	MHQPLRHTEDTVTSIVALLVLGLVGFFGLVVLLLTLALGF*
Ga0105679_109816621	3300007790	Soil	MRQPLRHIEDPLTSVLALLVSAVLGFFGLLPLMLILALDF*
Ga0126307_1000203414	3300009789	Serpentine Soil	MQQPLRHIEDTVTSVVVLLVLGAMGFFGFVVLLLTLALGF*
Ga0126307_1000232016	3300009789	Serpentine Soil	MQQPLRHIEDTVTSVVVLLVFGAMGFFGLVVLMLTLALGF*
Ga0126307_100267635	3300009789	Serpentine Soil	MRQPLRHIEDTVTSVVVLLVFGAMGLFRLVVLMLTLALGF*
Ga0126307_100410764	3300009789	Serpentine Soil	MHKPFRHIEDTVTSVVALLISAALGFFGVVVVVLMLALGF*
Ga0126307_100524973	3300009789	Serpentine Soil	MHKPLRHIEDPVTSVVALLVWAVLGFLGLLVLMLTLALGF*
Ga0126307_100649766	3300009789	Serpentine Soil	MHKPLRHIEDPVTSIVALLVWVALGFLSLLVLMLTLALGF*
Ga0126307_100723571	3300009789	Serpentine Soil	VTTGRRRNKLHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLAIGF*
Ga0126307_100927264	3300009789	Serpentine Soil	MRQPLRHIEDPITSVLALLLSAAIGFFGLFVLVLMLALGL*
Ga0126307_101088062	3300009789	Serpentine Soil	MRQPHRHIEDTVTSVVGLLVLGVMGFLGLVVLMLTLALGF*
Ga0126307_101100141	3300009789	Serpentine Soil	MHKPLRHIEDPVTSVVALLVWVALGFLGLLVLMLTLALGF*
Ga0126307_101235001	3300009789	Serpentine Soil	MHKPLHHIEDTVTSVIALLVLGAMGFFGLVVLVLALALGF*
Ga0126307_101337884	3300009789	Serpentine Soil	MHKPLRHIEDPVTSIGALLVWVALGFLGLLVLMLTLALGF*
Ga0126307_101464142	3300009789	Serpentine Soil	MHKPLRHVEDPVTSIVALLVSVALGFLGLLVLMLTLALGF*
Ga0126307_103145012	3300009789	Serpentine Soil	MHQPLRHIEDTVTSVVALLVFAVVGFFGLVVLLLTLALGF*
Ga0126307_103219193	3300009789	Serpentine Soil	MRQPLHHIEDSVTSVVALLIWAALGVLGLLVLALMLALGF*
Ga0126307_103925032	3300009789	Serpentine Soil	MRQPHHHIGDTVTSIVALLVLGAMGFFGLVVLMLTLALGF*
Ga0126307_105273231	3300009789	Serpentine Soil	MHKPLRHMEDPLASIVALLLWAALGFLGLLVLMLTLARGF*
Ga0126307_105556211	3300009789	Serpentine Soil	MHKPLRHIEDPVASIVALLVWVALGFLGLLVLMLTLALGF*
Ga0126307_106550882	3300009789	Serpentine Soil	MHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLALGF*
Ga0126307_108540572	3300009789	Serpentine Soil	RQKMRQPLRHIEDTVTSMVALLVLAVVGFFGLVVLLLTLALGF*
Ga0126313_100114452	3300009840	Serpentine Soil	MRQPHRHIEDTVTSVVGLFVFGAMGFLGLVVLMLALALGF*
Ga0126313_1001922011	3300009840	Serpentine Soil	MRQPPRHIDDPVTSVIALLISAVLGFFGLLVLMLTLALGL*
Ga0126313_100352083	3300009840	Serpentine Soil	MHKPLRHVEDPVTSIFALLVWAALGFLGLLVLMLTLALGF*
Ga0126313_101020822	3300009840	Serpentine Soil	MHQPLRHIEDTVTSVVALLVLGVVGFFGLVVLMLTLALGF*
Ga0126313_101105313	3300009840	Serpentine Soil	MKQPHHHIEGTVTSIVVLLVLAVVGFFGLVVLLTLALGF*
Ga0126313_101687663	3300009840	Serpentine Soil	MRQPFRHIEDTVTSVVTLLVSAVLGFFVVLVLVLMLALGL*
Ga0126313_101795213	3300009840	Serpentine Soil	MQQPHRHIEDTVTSIVALLVLAVVGFFGLVVLLLTLALGF*
Ga0126313_102093652	3300009840	Serpentine Soil	MRQPLRHIEDTVTSVIALLVSAVLDFFIVLVLVLMLALGL*
Ga0126313_103092491	3300009840	Serpentine Soil	MHKPLRHIEDPLASVVALLLWAALGFLGLLVLMLTLALGF*
Ga0126313_103968813	3300009840	Serpentine Soil	MHKPLRHVEDPVTSVVALLVCTALGFLGLLVMMLTLALGF*
Ga0126313_106342221	3300009840	Serpentine Soil	VPTDKRRKKMHKPLRHIEDPVTSIVALLVWVALGFLGLLV
Ga0126313_108318133	3300009840	Serpentine Soil	MHKPLRHIEDPLTSVVALLIWTALGFLGLLVVMLTLALGF*
Ga0126313_109315601	3300009840	Serpentine Soil	MHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLAFSF*
Ga0126313_109768482	3300009840	Serpentine Soil	MQQPHRHTEGAVTSIVVLLVLAVVSFFGSVVLLTLALGF*
Ga0126313_111835802	3300009840	Serpentine Soil	MQQPLRHIEDTVTSVVVLLVFGAIGFFGLVVLMLTLALGF*
Ga0126313_112742382	3300009840	Serpentine Soil	VPTDKRRKKMHKPLRHIEDPVTSIGALLVWVALGFLGLLVLMLTLALGF*
Ga0126305_100038999	3300010036	Serpentine Soil	MRQPLRHIEDTVTSVVALLVFGAVGFFGLVVLMLTLALGF*
Ga0126305_100172503	3300010036	Serpentine Soil	MRQPFRHIEDTVTSVVTLLVSAVLGFFVVLVLVMMLAPGL*
Ga0126305_100243781	3300010036	Serpentine Soil	MHKPLRHIEDPVTSVVALLVWAALGFLGLLVLMLTLALGF*
Ga0126305_100251433	3300010036	Serpentine Soil	MRQPLRHIEDTVTSVIALLVSAVLGFFIVLVLVLMLALGL*
Ga0126305_102849842	3300010036	Serpentine Soil	MHKPLRHIEDTVTSVVALLVFGVLGFFGLVVLMLTLALGF*
Ga0126305_103748532	3300010036	Serpentine Soil	MHKPLRHIEDPLTSVVALLIWAALGFLGLLVVMLTLAFGF*
Ga0126305_105807472	3300010036	Serpentine Soil	MRQPHRHIEDTVTSVVGLLVLGVMGFLGLVVLMLALALGF*
Ga0126305_105994641	3300010036	Serpentine Soil	VHKPLRHVEDTITSVVALLVFGAVGFFGLVVLMLTLALGF*
Ga0126305_106521662	3300010036	Serpentine Soil	MQQPLRHIEDTVTSIVALLVLGVVGFFGLVVLLLSLALGF*
Ga0126305_107118092	3300010036	Serpentine Soil	MHKPLRHIEDPLTSVVALLIWAALGFLGLLVVMLTLALGF*
Ga0126305_107155143	3300010036	Serpentine Soil	PIKNRGEKMHQPLRHIEDTVTSVVALLVLGVVGFFGLVVLMLTLALGF*
Ga0126305_107795941	3300010036	Serpentine Soil	RMHKPLRHIEDPLASVVALLLWAALGFLGLLVLMLTLALGF*
Ga0126305_110415401	3300010036	Serpentine Soil	MQQPHRHTEGAVTSIAVLLVLAVVGFFGSVVLLTLALGF*
Ga0126305_111476042	3300010036	Serpentine Soil	MHQPLRHIEDTVTSVVVLLVLAVVGFFGLVVLLLTLALGF*
Ga0126305_112302991	3300010036	Serpentine Soil	MQQPLRHIEDTVTSVVALLVLAVVGFFGLVVLLLTLALGF*
Ga0126305_112692272	3300010036	Serpentine Soil	MQQPHHHIEGTVTSIVVLLVLAVVGFFGLVVLLTLALGF*
Ga0126304_101864082	3300010037	Serpentine Soil	MHKPLRHIEDPVASIVALLVWVALGFLALLVLMLTLALGF*
Ga0126304_102927693	3300010037	Serpentine Soil	MQQPLRHIEDTVTSIVALLVLAVVGFFGLVVLLLTLALGF*
Ga0126304_104959551	3300010037	Serpentine Soil	MRQPLHHIEDSVTSVVALLIWAALGVLGLPVLALMLALGF*
Ga0126304_105771542	3300010037	Serpentine Soil	MQQPHRYTEGAVTSIAVLLVLAVVGFFGSVVLLTLALGF*
Ga0126304_107522331	3300010037	Serpentine Soil	MHKPLRHIEDPLTSVVALLLWAALGLLVQMLTLGF*
Ga0126315_100673553	3300010038	Serpentine Soil	MHKPLRHIEDPLASVVALLLWAALGFLGLLVLMLTLALGF
Ga0126315_100887784	3300010038	Serpentine Soil	MHKPLRHIEDPVTSIVALLVWVAFGFLGLLVLMLTLAFGF*
Ga0126315_101191702	3300010038	Serpentine Soil	MRQPGRHIEDPVTSVVALLVFAALGFLGLLVLMLTLALGF*
Ga0126315_106652651	3300010038	Serpentine Soil	EKMQQPLRHIEDTVTSIVALLVLAVVGLFGLVVLLLTLALGF*
Ga0126315_109320151	3300010038	Serpentine Soil	TDKRRKKMHKPLRHIEDPVTSIVALLVWVALGFLGLLVVMLTLALGF*
Ga0126309_100434342	3300010039	Serpentine Soil	MHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLAIGF*
Ga0126309_102289972	3300010039	Serpentine Soil	MQQPLRHIEDTVTSIVVLLVFGAMGFFGLVVLMLTLALGF*
Ga0126309_104474622	3300010039	Serpentine Soil	MRQPLRHIEDPVTSVVALLVSAALGSMGLLVLVLMLALGF*
Ga0126309_108053142	3300010039	Serpentine Soil	MQQPLRHIEDTVTSLVVLLVLGVVGFFGLVVLGLTLALGF*
Ga0126308_100760383	3300010040	Serpentine Soil	MHKPLRHIEDPVTSVVALLVWGALGFVGLLVLMLTLALGF*
Ga0126308_102118231	3300010040	Serpentine Soil	MRQPVRHIEDTVTSVVALFGSAVLGFFVVLVLVLMLALGL*
Ga0126308_102126333	3300010040	Serpentine Soil	MQQPHHHIEGTVTSIVVLLVLGVVGFFGLVVLLTLALGF*
Ga0126308_102190602	3300010040	Serpentine Soil	MQQPHRHIEDTVTSIVVLLVFGAMGVFGLVVLMLTLALGF*
Ga0126308_103074321	3300010040	Serpentine Soil	MQQPLRHIEDTVTSIVALLVLAVVGLFGLVVLLLTLALGF*
Ga0126308_103366613	3300010040	Serpentine Soil	VHKPVRHIEDPLTSVVALLIWAALGFLGLLVVMLTLAFGF*
Ga0126308_104076752	3300010040	Serpentine Soil	MHKPLRHIEDPVTSIVALLVWVVLGFLGLLVLMLTLALGF*
Ga0126308_104334881	3300010040	Serpentine Soil	MHKPLRHIEDPVTSIIALLVWVALGFLGLLVLMITLALGF*
Ga0126308_104520442	3300010040	Serpentine Soil	MQQPLRHIEDTVTSIVALLVLAGVGFFGLVVLMLTLALGF*
Ga0126308_104762982	3300010040	Serpentine Soil	MHQPLRHIEDTVTSVVVLLVLAGVGFFGLVVLLLTLALGF*
Ga0126308_106871682	3300010040	Serpentine Soil	MQQPHRYTEGTVTSIVVLLVLAVVGSFGSVVLLTLALGF*
Ga0126308_109082611	3300010040	Serpentine Soil	MRQPLHHIEDSVTSVVTLLIWAALGVLGLLVLALMLALGF*
Ga0126308_110879951	3300010040	Serpentine Soil	MHQPLRHIEDTVTSVVALLVLGVVGFFGLVVLGLTLALGF*
Ga0126308_112195202	3300010040	Serpentine Soil	MRQPLHHIEDTVTSVVVLLVFGAMGFFGLVVLMLALALGF*
Ga0126312_100202184	3300010041	Serpentine Soil	MWQPHHHIGDTVTSIVALLVLGAMGFFGLVVLMLTLALGF*
Ga0126312_102457032	3300010041	Serpentine Soil	MRQPPRHIEDPITSVVTLVVSAALGFMGLLVLMLTVALG
Ga0126312_102750542	3300010041	Serpentine Soil	MHKPLRHIEDPVISIAALLVWVALGFLGLLVLMLTLALGF*
Ga0126312_103468382	3300010041	Serpentine Soil	MQQPHHHIEDTVTSIVVLLVLAVVGFFGLVVLMLTLALGF*
Ga0126312_103548212	3300010041	Serpentine Soil	MHKPLRHIEDPVTSIVALLVWVALGFLGLLVVMLTLALGF*
Ga0126312_104185161	3300010041	Serpentine Soil	MRQPLRHIEDPITSVVTLVVSAALGFMGLLVLMLTVALGF*
Ga0126314_104716482	3300010042	Serpentine Soil	MHKPLRHIEDPVTSVVALLVWVALGFLGLLVLMLTL
Ga0126314_107656482	3300010042	Serpentine Soil	MQQPHRHIEDTVTSIVVLLVFGAMGFFGLVVLMLTLALGF*
Ga0126314_112328152	3300010042	Serpentine Soil	MQQPLRHIEDTVTSVVVLLVLTMVGFFGLVVLLLALALGF*
Ga0126310_100044834	3300010044	Serpentine Soil	MHKPLRHTEDTVTSIVALLVLAVVGFFGFVVLLLTLALGF*
Ga0126310_100133264	3300010044	Serpentine Soil	VALIALERRRKKMRRPLRHIEDPLPSVVALLVWAALGLLGLLVLALMLALGF*
Ga0126310_100270913	3300010044	Serpentine Soil	MQQPLRHIEDTVTSIVALLVLGVVGFFGLVVLLLTLALGF*
Ga0126310_100496323	3300010044	Serpentine Soil	MRQPVRHIEDTVTSVVALFGSAVLGCFVVLVLVLMLALGL*
Ga0126310_101621212	3300010044	Serpentine Soil	MHKPVRHIEDPLTSVVALLIWAALGFLSLLVVMLTLAFGF*
Ga0126310_101746931	3300010044	Serpentine Soil	MRQPLRHIEDPVTSVVALFVWAAMGFLGLLVLALTLALGL*
Ga0126310_102093731	3300010044	Serpentine Soil	MRQPLRHIEDPITSVLALLASAALGFFGLLALMLILALGL*
Ga0126310_102701272	3300010044	Serpentine Soil	MHKPLRHIEDPVTSVVALLAIGAVGLFGLVVLMLALALGF*
Ga0126310_103048443	3300010044	Serpentine Soil	MRQPHRHIEDTVTSAAGLLVLGAMGFFGLVVLMLALALGF*
Ga0126310_103908671	3300010044	Serpentine Soil	MHKPLRHVEDPVTSIVALLVSVALGFLGLLVLMLTLALG
Ga0126310_106160332	3300010044	Serpentine Soil	MQKPLRHIEDTITSVVALLVLAVVGFFGLVVLLLTLALGF*
Ga0126310_106398992	3300010044	Serpentine Soil	MHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTIALGF*
Ga0126311_100742644	3300010045	Serpentine Soil	MHQPLRHIEDTVTSVVVLLVFGATGFFGLVVLLLTLALGF*
Ga0126311_101984892	3300010045	Serpentine Soil	MRQPFRHIEDPVTSVVALFIWAALGFLGLLVLVLTLALGL*
Ga0126311_102781442	3300010045	Serpentine Soil	MRQPRHHIEDSVTSVITLLIWAALGVLGLLVLALMLALGF*
Ga0126311_103405452	3300010045	Serpentine Soil	LIKNRGEKMRQPHRHIEDTVTSVVGLLVFGAMGFFGLAVLMLALALGF*
Ga0126306_100308127	3300010166	Serpentine Soil	KMHKPLRHIEDPVTSIGALLVWVALGFLGLLVLMLTLALGF*
Ga0126306_101318154	3300010166	Serpentine Soil	KMHKPLRHIEDPVTSIGALLVWVALGFLGLLVLMITLALGF*
Ga0126306_102031553	3300010166	Serpentine Soil	MRQPLRHIEDTVTSVIALLVSAVLGFFLVLVLVLMLALGL*
Ga0126306_108155552	3300010166	Serpentine Soil	MQQPLRHIEDTVTSVVVLLVFAGVGFFGLVVLLLTLALGF*
Ga0058701_104226883	3300010395	Agave	VTTGRRRKKLHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLAIGF*
Ga0162650_1001004621	3300012939	Soil	MQQPLRHIEDTVTSVVVLLVFGAIGFLGLVVLMLTLALGF*
Ga0182000_100501172	3300014487	Soil	MQQPHHHGEGTVTSIVVLLVLAVVGFFGLVVLLTLALGF*
Ga0182000_105951791	3300014487	Soil	MHKPLRHIEDPVTSIVALLIWVALGFLGLVVLMLTLALGF*
Ga0182001_100122392	3300014488	Soil	VALIALERRRKKMRRPLRHIEDPLPSVVALLVWAALGFLGLLVLALMLALGF*
Ga0182008_100362021	3300014497	Rhizosphere	MRQPLRHIEDTLTSIVALLALGVVGFFGLVVLMLTLALGF*
Ga0190266_104471641	3300017965	Soil	LRHIEDPVTSIVALLVWVALGFLGLLVLMLTLAIGF
Ga0190275_124115972	3300018432	Soil	MHKPLRHIEDPVTSIVALLVWVVLGFLGLLVLMLTLALGF
Ga0190269_101102811	3300018465	Soil	MQQPHRHTEGTVTSIVVLLVLAVVGFFGSVVLLTLALGF
Ga0190269_103630761	3300018465	Soil	MQQPHHHVEGTVTSIVVLLVLAVVGFFGLVVLLTLALGF
Ga0190269_112391821	3300018465	Soil	APSAPKTKEKEVHKQVRHIEDPLASVVALLIWAALGFLGLLVVMLMLAFGF
Ga0190268_103061831	3300018466	Soil	KTMHKPLRHVEDPLTSVVALLIWAALGFLGLLVVMLTLALGF
Ga0190270_108957793	3300018469	Soil	MHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLALGF
Ga0190273_100080727	3300018920	Soil	MRQPLRHIEDSVTSVVALLLWAALGLLGLLVLALMLALGF
Ga0190273_102507453	3300018920	Soil	MRQPPRHIEDTVTSIVVLLVFGAMGFFGLVVLMLTLALGF
Ga0190267_102158072	3300019767	Soil	MRQPHRHIEDTVTSVVGLLVLGAMGFLGLVVLMLALALGF
Ga0190267_114337522	3300019767	Soil	MHKPLRRIEGTVTSIVMLLVLAVVGIFGSVVLLTLALGF
Ga0207661_108040063	3300025944	Corn Rhizosphere	RHIEDTVTSVVGLLVLGAMGFFGLAALMLALALGF
Ga0209795_101098501	3300027718	Agave	KPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLAIGF
Ga0209461_100551392	3300027750	Agave	VTTGRRRKKLHKPLRHIEDPVTSIVALLVWVALGFLGLLVLMLTLAIGF
Ga0209574_100411152	3300027809	Agave	MRQPLRHVEDTVTSVVALLTLGVVGFFGLVVLGLMLALGF
Ga0307276_100191222	3300028705	Soil	MQQPLRHIEDTVTSVVVLLVLTVVGFFGLVVLLLALALGF
Ga0307276_101269781	3300028705	Soil	MRQQLRHIEDPITSVVALLVWAALGFLGLLVLALVLALGI
Ga0307319_102801312	3300028722	Soil	MQQPLRHIEDTVTEDTVTSVVVLLVLAVVGFFGLVVLLLALALGF
Ga0307318_103114211	3300028744	Soil	QPLRHIEDTVTSVVVLLVLTVVGFFGLVVLLLALALGF
Ga0307297_100016703	3300028754	Soil	MRQPLRHVEDTVTSVVALLALGVVGFFGLIVLLLTLALGF
Ga0307297_100142553	3300028754	Soil	MQLPHHHIEDTVTSIVVLLIFGAMGFFGLVVLMLALALGF
Ga0307288_100204552	3300028778	Soil	VPIKNRGEKMQLPHHHIEDTVTSIVVLLIFGAMGFFGLVVLMLALALGF
Ga0268242_10280962	3300030513	Soil	MQKPLRHIEDTITSVVALLVLAVVGFFGLVVLLLTLALGF
Ga0268253_100445932	3300030514	Agave	MRQPLRHVEDTVTSVVALLTLGVVGFFGLVMLGLMLALGF
Ga0307408_1007069393	3300031548	Rhizosphere	MHKPLRHIEDPVTSIVALLVSVALGFLGLLVLMLTLALGF
Ga0307408_1012914611	3300031548	Rhizosphere	MRQPFRHIEDTVTSVVTLLVSAVLGFFVVLVLVMMLALGL
Ga0307408_1013667282	3300031548	Rhizosphere	MQQPHHHIEGTVTSIVVLLVLAVVGFFGLVVLLTLALGF
Ga0307405_109392112	3300031731	Rhizosphere	MRQPLHHIEDPVTSVVTLLIWAALGVLGLLVLALMLALGF
Ga0307413_110913561	3300031824	Rhizosphere	MRQPHHHIGDTVTSIVALLVLGAMGFFGLVVLMLTLALGF
Ga0307406_102207102	3300031901	Rhizosphere	MRQPLRHIEDTVTSVIALLVSAVLGFFIVLVLVLMLALGL
Ga0307406_106893831	3300031901	Rhizosphere	MHKPLRHIEDPVTSIGALLVWVALGFLGLLVLMLTLALGF
Ga0307407_106274022	3300031903	Rhizosphere	MKQPHHHIEGTVTSIVVLLVLAVVGFFGLVVLLTLALGF
Ga0307409_1008472392	3300031995	Rhizosphere	VPTDKRRKKMHKPLRHIEDPVTSIGALLVWVALGFLGLLVLMLTLALGF
Ga0307416_1007120553	3300032002	Rhizosphere	MHKPLRHIEDPVTSVVALLVWAALGYLGLLVLMLTFALGF
Ga0307416_1021013142	3300032002	Rhizosphere	MQQPHRHTEGTVTSIVVLLVLAVVGSFGSVVLLTLALGF
Ga0307411_101901253	3300032005	Rhizosphere	MRQPLHHIEDSVTSVVALLIWAALGVLGLLVLALMLALGF
Ga0307415_1017256792	3300032126	Rhizosphere	EKMQQPHHHIEGTVTSIVVLLVLAVVGFFGLVVLLTLALGF
Ga0268251_100486091	3300032159	Agave	MHKPLRHIEDPVISIAALLVWVALGFLGLLVLMLTLALGF
Ga0268251_101232582	3300032159	Agave	MRQPLRHIEDTLTSIVTLLALGVVGFFGLVVLMLTLALGF
Ga0268251_102396611	3300032159	Agave	MRQPLRHIEDTVTSIVALLALGVVGFFGLVVLMLALALGF
Ga0268251_102611582	3300032159	Agave	MRQPLRHIEDTVTSVVALLTLGVVGFFGLVVLGLMLALGF
Ga0268251_103717121	3300032159	Agave	MRQPIRHVEDPVTSVVALLVWAALGFVGLLVLALVLALSL
Ga0268251_105955151	3300032159	Agave	VHKPVRHIEDPLTSVVALLIWAALGFLSLLVVMLTLAFGF
Ga0334931_172710_167_289	3300034377	Sub-Biocrust Soil	MRQPHRHIEDTVTSVVALLVFGVVGFIGLLVLMLTLALGF
Ga0334917_008884_689_811	3300034391	Hypolithic Biocrust	MQQPLRHIEDTVTSVVVLLIFGAMGFFGLVVLGLALALGF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F031762

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences