Metagenome / Metatranscriptome Family F029479

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F029479
Family Type	Metagenome / Metatranscriptome
Number of Sequences	188
Average Sequence Length	53 residues
Representative Sequence	MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Number of Associated Samples	82
Number of Associated Scaffolds	188

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.79 %
% of genes near scaffold ends (potentially truncated)	25.53 %
% of genes from short scaffolds (< 2000 bps)	93.62 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.830 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (31.383 % of family members)
Environment Ontology (ENVO)	Unclassified (38.298 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.809 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.80% β-sheet: 0.00% Coil/Unstructured: 64.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 188 Family Scaffolds
PF12680	SnoaL_2	10.64
PF00072	Response_reg	4.79
PF00982	Glyco_transf_20	2.66
PF13545	HTH_Crp_2	2.66
PF05443	ROS_MUCR	2.13
PF00486	Trans_reg_C	2.13
PF01381	HTH_3	2.13
PF13683	rve_3	1.06
PF00753	Lactamase_B	1.06
PF09351	DUF1993	1.06
PF08899	DUF1844	0.53
PF05694	SBP56	0.53
PF09361	Phasin_2	0.53
PF01594	AI-2E_transport	0.53
PF13181	TPR_8	0.53
PF12840	HTH_20	0.53
PF13340	DUF4096	0.53
PF00216	Bac_DNA_binding	0.53
PF13185	GAF_2	0.53
PF00561	Abhydrolase_1	0.53
PF12146	Hydrolase_4	0.53
PF00872	Transposase_mut	0.53
PF06808	DctM	0.53
PF00011	HSP20	0.53
PF01738	DLH	0.53
PF06983	3-dmu-9_3-mt	0.53
PF00578	AhpC-TSA	0.53
PF03099	BPL_LplA_LipB	0.53
PF04120	Iron_permease	0.53
PF05239	PRC	0.53
PF00989	PAS	0.53

COG ID	Name	Functional Category	% Frequency in 188 Family Scaffolds
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	2.66
COG4957	Predicted transcriptional regulator	Transcription [K]	2.13
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.53
COG0095	Lipoate-protein ligase A	Coenzyme transport and metabolism [H]	0.53
COG0321	Lipoate-protein ligase B	Coenzyme transport and metabolism [H]	0.53
COG0340	Biotin-protein ligase	Coenzyme transport and metabolism [H]	0.53
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.53
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.53
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.53
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.53
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.53

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
All Organisms	root	All Organisms	36.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
cellular organisms	root	All Organisms → cellular organisms	34.57 %
Viruses	superkingdom	All Organisms → Viruses	1.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.53 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.53 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	11.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.53 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.53 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	7.45 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	2.13 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	0.53 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.53 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.53 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
Microvirga calopogonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	3.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	1.06 %
Microvirga aerophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga aerophila	0.53 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.53 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.53 %
Methylobacterium nodulans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	0.53 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	0.53 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.53 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.83 %
Microvirga calopogonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	3.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	1.06 %
Mesorhizobium sp. CA14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. CA14	0.53 %
Methylobacterium sp. BTF04	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. BTF04	0.53 %
Microvirga aerophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga aerophila	0.53 %
Methylobacterium nodulans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	0.53 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	0.53 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.53 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.53 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_1256640	All Organisms → Viruses → Predicted Viral	1004	Open in IMG/M
3300000827\|JGI12396J12026_1017119	Not Available	842	Open in IMG/M
3300002568\|C688J35102_119308006	Not Available	671	Open in IMG/M
3300002568\|C688J35102_119875066	Not Available	800	Open in IMG/M
3300002568\|C688J35102_120584370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1208	Open in IMG/M
3300002568\|C688J35102_120613547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1244	Open in IMG/M
3300002568\|C688J35102_120710291	All Organisms → cellular organisms → Bacteria → Proteobacteria	1396	Open in IMG/M
3300002568\|C688J35102_120824412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1703	Open in IMG/M
3300002568\|C688J35102_120964526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3380	Open in IMG/M
3300004081\|Ga0063454_100475687	Not Available	868	Open in IMG/M
3300004081\|Ga0063454_100593856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. BTF04	807	Open in IMG/M
3300004081\|Ga0063454_101746225	Not Available	543	Open in IMG/M
3300004081\|Ga0063454_101885646	Not Available	526	Open in IMG/M
3300004153\|Ga0063455_101522706	Not Available	523	Open in IMG/M
3300005328\|Ga0070676_10919896	Not Available	652	Open in IMG/M
3300005331\|Ga0070670_100817196	Not Available	842	Open in IMG/M
3300005356\|Ga0070674_101669485	Not Available	576	Open in IMG/M
3300005356\|Ga0070674_102119229	Not Available	513	Open in IMG/M
3300005441\|Ga0070700_101442499	Not Available	583	Open in IMG/M
3300005456\|Ga0070678_100704993	Not Available	910	Open in IMG/M
3300005543\|Ga0070672_101629061	Not Available	579	Open in IMG/M
3300006196\|Ga0075422_10450684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	577	Open in IMG/M
3300006358\|Ga0068871_100389947	All Organisms → cellular organisms → Bacteria → Proteobacteria	1238	Open in IMG/M
3300006844\|Ga0075428_100950080	Not Available	911	Open in IMG/M
3300006845\|Ga0075421_101174501	Not Available	857	Open in IMG/M
3300006845\|Ga0075421_102728070	Not Available	510	Open in IMG/M
3300006847\|Ga0075431_101990950	Not Available	536	Open in IMG/M
3300006876\|Ga0079217_11628644	Not Available	516	Open in IMG/M
3300007004\|Ga0079218_10172269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1613	Open in IMG/M
3300007790\|Ga0105679_10393868	All Organisms → cellular organisms → Bacteria → Proteobacteria	1129	Open in IMG/M
3300007790\|Ga0105679_10416962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1602	Open in IMG/M
3300009094\|Ga0111539_10203595	Not Available	2307	Open in IMG/M
3300009146\|Ga0105091_10147588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1101	Open in IMG/M
3300009156\|Ga0111538_10864036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1145	Open in IMG/M
3300009156\|Ga0111538_13520538	Not Available	543	Open in IMG/M
3300009156\|Ga0111538_13546622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	541	Open in IMG/M
3300009176\|Ga0105242_11459874	Not Available	713	Open in IMG/M
3300009789\|Ga0126307_10033950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3939	Open in IMG/M
3300009789\|Ga0126307_10051835	All Organisms → cellular organisms → Bacteria	3205	Open in IMG/M
3300009789\|Ga0126307_10054304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3133	Open in IMG/M
3300009789\|Ga0126307_10084119	Not Available	2512	Open in IMG/M
3300009789\|Ga0126307_10190288	Not Available	1646	Open in IMG/M
3300009789\|Ga0126307_10349316	Not Available	1191	Open in IMG/M
3300009789\|Ga0126307_10627258	Not Available	868	Open in IMG/M
3300009789\|Ga0126307_10768771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga aerophila	777	Open in IMG/M
3300009789\|Ga0126307_10803043	Not Available	759	Open in IMG/M
3300009789\|Ga0126307_11497376	Not Available	547	Open in IMG/M
3300009789\|Ga0126307_11674467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	517	Open in IMG/M
3300009840\|Ga0126313_10250765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1373	Open in IMG/M
3300009840\|Ga0126313_10460636	All Organisms → Viruses → Predicted Viral	1015	Open in IMG/M
3300009840\|Ga0126313_10697314	Not Available	822	Open in IMG/M
3300009840\|Ga0126313_11234390	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300010036\|Ga0126305_10307757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1030	Open in IMG/M
3300010036\|Ga0126305_10508290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	804	Open in IMG/M
3300010036\|Ga0126305_11105768	Not Available	546	Open in IMG/M
3300010036\|Ga0126305_11149157	Not Available	535	Open in IMG/M
3300010037\|Ga0126304_10301252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1062	Open in IMG/M
3300010037\|Ga0126304_10681499	Not Available	694	Open in IMG/M
3300010037\|Ga0126304_10713129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	678	Open in IMG/M
3300010037\|Ga0126304_11220853	Not Available	516	Open in IMG/M
3300010038\|Ga0126315_10052223	All Organisms → cellular organisms → Bacteria → Proteobacteria	2223	Open in IMG/M
3300010038\|Ga0126315_10058671	Not Available	2111	Open in IMG/M
3300010038\|Ga0126315_10400066	Not Available	863	Open in IMG/M
3300010038\|Ga0126315_10503619	Not Available	772	Open in IMG/M
3300010038\|Ga0126315_11180990	Not Available	519	Open in IMG/M
3300010039\|Ga0126309_10026492	All Organisms → cellular organisms → Bacteria → Proteobacteria	2594	Open in IMG/M
3300010039\|Ga0126309_10787116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	619	Open in IMG/M
3300010040\|Ga0126308_10099272	Not Available	1782	Open in IMG/M
3300010040\|Ga0126308_10552042	Not Available	782	Open in IMG/M
3300010040\|Ga0126308_10667187	Not Available	713	Open in IMG/M
3300010040\|Ga0126308_10791235	Not Available	656	Open in IMG/M
3300010040\|Ga0126308_10984701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	590	Open in IMG/M
3300010040\|Ga0126308_11281311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	520	Open in IMG/M
3300010041\|Ga0126312_10097894	Not Available	2003	Open in IMG/M
3300010041\|Ga0126312_10306957	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300010041\|Ga0126312_10448707	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300010041\|Ga0126312_10795962	Not Available	686	Open in IMG/M
3300010041\|Ga0126312_11277129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	543	Open in IMG/M
3300010041\|Ga0126312_11331855	Not Available	532	Open in IMG/M
3300010042\|Ga0126314_10020797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3975	Open in IMG/M
3300010042\|Ga0126314_10936929	Not Available	641	Open in IMG/M
3300010042\|Ga0126314_11177696	Not Available	572	Open in IMG/M
3300010042\|Ga0126314_11363556	Not Available	532	Open in IMG/M
3300010044\|Ga0126310_10260988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1173	Open in IMG/M
3300010044\|Ga0126310_10295950	Not Available	1112	Open in IMG/M
3300010044\|Ga0126310_10430719	Not Available	947	Open in IMG/M
3300010044\|Ga0126310_10622271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	808	Open in IMG/M
3300010045\|Ga0126311_11268973	Not Available	611	Open in IMG/M
3300010045\|Ga0126311_11272234	Not Available	610	Open in IMG/M
3300010045\|Ga0126311_11307916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	603	Open in IMG/M
3300010140\|Ga0127456_1226888	Not Available	560	Open in IMG/M
3300010166\|Ga0126306_10129271	Not Available	1858	Open in IMG/M
3300010166\|Ga0126306_10476881	Not Available	984	Open in IMG/M
3300010166\|Ga0126306_10566580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	903	Open in IMG/M
3300010166\|Ga0126306_10998338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	682	Open in IMG/M
3300010166\|Ga0126306_11008465	Not Available	678	Open in IMG/M
3300010166\|Ga0126306_11062242	Not Available	662	Open in IMG/M
3300011119\|Ga0105246_10359313	All Organisms → Viruses → Predicted Viral	1196	Open in IMG/M
3300011119\|Ga0105246_11032935	Not Available	746	Open in IMG/M
3300011333\|Ga0127502_10616129	Not Available	608	Open in IMG/M
3300012212\|Ga0150985_101531365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. CA14	876	Open in IMG/M
3300012212\|Ga0150985_103237240	Not Available	534	Open in IMG/M
3300012212\|Ga0150985_103673174	All Organisms → cellular organisms → Bacteria → Proteobacteria	924	Open in IMG/M
3300012212\|Ga0150985_104784727	Not Available	682	Open in IMG/M
3300012212\|Ga0150985_106222030	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300012212\|Ga0150985_107088671	Not Available	644	Open in IMG/M
3300012212\|Ga0150985_107481680	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300012212\|Ga0150985_109340823	Not Available	520	Open in IMG/M
3300012212\|Ga0150985_110139549	Not Available	844	Open in IMG/M
3300012212\|Ga0150985_115199171	Not Available	663	Open in IMG/M
3300012212\|Ga0150985_118780454	Not Available	521	Open in IMG/M
3300012212\|Ga0150985_120152868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1149	Open in IMG/M
3300012469\|Ga0150984_100554245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	794	Open in IMG/M
3300012469\|Ga0150984_103026629	Not Available	770	Open in IMG/M
3300012469\|Ga0150984_107657460	Not Available	866	Open in IMG/M
3300012469\|Ga0150984_108245620	Not Available	545	Open in IMG/M
3300012469\|Ga0150984_109603548	Not Available	573	Open in IMG/M
3300012469\|Ga0150984_110783097	Not Available	963	Open in IMG/M
3300012469\|Ga0150984_114548463	Not Available	504	Open in IMG/M
3300012469\|Ga0150984_119569751	Not Available	937	Open in IMG/M
3300012469\|Ga0150984_120343050	Not Available	744	Open in IMG/M
3300012469\|Ga0150984_120713961	Not Available	557	Open in IMG/M
3300012469\|Ga0150984_123619617	Not Available	582	Open in IMG/M
3300012957\|Ga0164303_11078388	Not Available	578	Open in IMG/M
3300013297\|Ga0157378_12493818	Not Available	569	Open in IMG/M
3300013306\|Ga0163162_10864252	Not Available	1019	Open in IMG/M
3300013306\|Ga0163162_11339388	Not Available	814	Open in IMG/M
3300014325\|Ga0163163_12984351	Not Available	528	Open in IMG/M
3300014326\|Ga0157380_12253991	Not Available	609	Open in IMG/M
3300014745\|Ga0157377_10911169	Not Available	658	Open in IMG/M
3300015077\|Ga0173483_10095067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1231	Open in IMG/M
3300015077\|Ga0173483_10461627	Not Available	668	Open in IMG/M
3300015200\|Ga0173480_11106263	Not Available	529	Open in IMG/M
3300015265\|Ga0182005_1151851	Not Available	675	Open in IMG/M
3300017792\|Ga0163161_11756732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	551	Open in IMG/M
3300018067\|Ga0184611_1345231	Not Available	511	Open in IMG/M
3300018422\|Ga0190265_11148838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	896	Open in IMG/M
3300018422\|Ga0190265_12109936	Not Available	667	Open in IMG/M
3300018432\|Ga0190275_10482618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	1269	Open in IMG/M
3300018432\|Ga0190275_11056102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	885	Open in IMG/M
3300018432\|Ga0190275_11791773	Not Available	692	Open in IMG/M
3300018432\|Ga0190275_12008169	Not Available	657	Open in IMG/M
3300018432\|Ga0190275_12340195	Not Available	612	Open in IMG/M
3300018432\|Ga0190275_12995188	Not Available	546	Open in IMG/M
3300018465\|Ga0190269_10470831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	805	Open in IMG/M
3300018465\|Ga0190269_11737813	Not Available	529	Open in IMG/M
3300018465\|Ga0190269_11911832	Not Available	512	Open in IMG/M
3300018466\|Ga0190268_10241235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1029	Open in IMG/M
3300018466\|Ga0190268_11417228	Not Available	597	Open in IMG/M
3300018469\|Ga0190270_10157639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1855	Open in IMG/M
3300018469\|Ga0190270_10336727	Not Available	1364	Open in IMG/M
3300018469\|Ga0190270_10352621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1338	Open in IMG/M
3300018469\|Ga0190270_10382086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1295	Open in IMG/M
3300018469\|Ga0190270_10928042	Not Available	891	Open in IMG/M
3300018481\|Ga0190271_11801269	Not Available	724	Open in IMG/M
3300018481\|Ga0190271_12741912	Not Available	592	Open in IMG/M
3300018481\|Ga0190271_13149722	Not Available	553	Open in IMG/M
3300018920\|Ga0190273_10952417	Not Available	702	Open in IMG/M
3300019356\|Ga0173481_10562448	Not Available	593	Open in IMG/M
3300019377\|Ga0190264_10745301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	733	Open in IMG/M
3300019767\|Ga0190267_10486900	Not Available	724	Open in IMG/M
3300019767\|Ga0190267_10593599	Not Available	683	Open in IMG/M
3300019767\|Ga0190267_10846998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	616	Open in IMG/M
3300019767\|Ga0190267_11110514	Not Available	569	Open in IMG/M
3300019767\|Ga0190267_11389017	Not Available	532	Open in IMG/M
3300024426\|Ga0196960_10338895	Not Available	506	Open in IMG/M
3300025908\|Ga0207643_10405345	Not Available	863	Open in IMG/M
3300025936\|Ga0207670_11715010	Not Available	534	Open in IMG/M
3300025937\|Ga0207669_10009436	All Organisms → cellular organisms → Bacteria → Proteobacteria	4647	Open in IMG/M
3300025942\|Ga0207689_11092472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	672	Open in IMG/M
3300026067\|Ga0207678_11366592	Not Available	626	Open in IMG/M
3300026121\|Ga0207683_10249670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1619	Open in IMG/M
3300027909\|Ga0209382_11093927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	823	Open in IMG/M
3300027909\|Ga0209382_12148779	Not Available	530	Open in IMG/M
3300028592\|Ga0247822_11532905	Not Available	564	Open in IMG/M
3300031091\|Ga0308201_10063700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	967	Open in IMG/M
3300031562\|Ga0310886_10322240	Not Available	890	Open in IMG/M
3300031908\|Ga0310900_10778075	Not Available	772	Open in IMG/M
3300031908\|Ga0310900_11653324	Not Available	543	Open in IMG/M
3300031911\|Ga0307412_11659290	Not Available	585	Open in IMG/M
3300032013\|Ga0310906_11468323	Not Available	502	Open in IMG/M
3300032126\|Ga0307415_102179691	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300033551\|Ga0247830_11278295	Not Available	586	Open in IMG/M
3300034007\|Ga0334936_054752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	824	Open in IMG/M
3300034136\|Ga0334933_075746	Not Available	526	Open in IMG/M
3300034268\|Ga0372943_0473135	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	815	Open in IMG/M
3300034667\|Ga0314792_106712	Not Available	704	Open in IMG/M
3300034669\|Ga0314794_047240	Not Available	801	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.62%
Host-Associated	Host-Associated	31.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.02%
Plants	Host-Associated → Plants	31.38%
Aquatic	Environmental → Aquatic	1.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.11%
Freshwater	Environmental → Aquatic → Freshwater	1.06%
Roots	Host-Associated → Plants → Roots	1.06%
Sediment	Environmental → Aquatic → Sediment	0.53%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.57%
Loam	Environmental → Terrestrial → Soil → Loam	7.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.66%
Sand	Environmental → Terrestrial → Soil → Sand	2.13%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.06%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.06%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.53%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.53%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.53%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.57%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.38%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.66%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	2.13%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.06%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.06%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.53%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.53%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.53%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.53%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	31.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.09%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.38%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	6.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	5.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.66%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.06%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.53%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.53%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.53%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.53%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.53%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.53%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.53%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.53%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.53%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.53%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000827	Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate B) 0B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300024426	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034136	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 29HNS	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0008.00000250	2162886013	Switchgrass Rhizosphere	MSKKPTAAAANSERQRKVQTKAEANQPKKVTLPRLRFLDER
JGI12396J12026_10171192	3300000827	Soil	MSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKSEARKPKKVTLPRLSFLEKD*
C688J35102_1193080061	3300002568	Soil	MSMSKKPTGVAAGNSEALRIYERMEEERQRKVQAKAEANKPKKVTLPKLKFLDQK*
C688J35102_1198750661	3300002568	Soil	LSKAPTGAAAGNSEAVRIYEAMEQERQRKLEAKAEAAKPKKVSLPRLSFLDKK*
C688J35102_1205843701	3300002568	Soil	PSAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLEER*
C688J35102_1206135472	3300002568	Soil	MTKKPTGAAAGNSEAMRIYERMEEERLLKLQAKAEANKPKKVTLPKLKFLDEK*
C688J35102_1207102913	3300002568	Soil	MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
C688J35102_1208244121	3300002568	Soil	MTKKPTGAAVGNSEAMRIYERMEEERLRKPQAKAEANKPKKVTLPKLKFLDEK*
C688J35102_1209645267	3300002568	Soil	MTKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0063454_1004756873	3300004081	Soil	MSKKATGVAAGNAEAMRIYERMEEERQRKVQAKAKANKPKKVTLPKVTFLDRN*
Ga0063454_1005938562	3300004081	Soil	GNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0063454_1017462251	3300004081	Soil	TKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPRKVTLPKLKFLNEK*
Ga0063454_1018856461	3300004081	Soil	LSKKPTGAAAGNSEAIRIYEAMEQEGKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0063455_1015227062	3300004153	Soil	LSKTRTGAAGGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVSLPKLSFLDRK*
Ga0070676_109198962	3300005328	Miscanthus Rhizosphere	VSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFM
Ga0070670_1008171962	3300005331	Switchgrass Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLLKLQAKAEANQPKKVTLPKLKFLDEK*
Ga0070674_1016694852	3300005356	Miscanthus Rhizosphere	KKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFMEGGNT*
Ga0070674_1021192292	3300005356	Miscanthus Rhizosphere	TGAAAGNSEAMRIYERMEEERLRKLQAKAEAKKPKKVTMPKLKFLDEK*
Ga0070700_1014424991	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSL
Ga0070678_1007049931	3300005456	Miscanthus Rhizosphere	VSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFLEGE*
Ga0070672_1016290611	3300005543	Miscanthus Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKVQAKAEASKPKKVTLPKLKFLDEK*
Ga0075422_104506842	3300006196	Populus Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERVRKLQAKAEANKPGKVTLPKLTFLDEK*
Ga0068871_1003899472	3300006358	Miscanthus Rhizosphere	MSKKASGSAAGNSEAIRIYEKMEEERKRKLAAAEAEASKSKKVTLPRLKFMEGDNT*
Ga0075428_1009500803	3300006844	Populus Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLGEK*
Ga0075421_1011745011	3300006845	Populus Rhizosphere	MSKKPTAAAANSERQRKVQTKAEANQPKKVTLPRLRFLDER*
Ga0075421_1027280701	3300006845	Populus Rhizosphere	MSKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0075431_1019909502	3300006847	Populus Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPK
Ga0079217_116286441	3300006876	Agricultural Soil	MTKQPTGVAAGNSEAIRIYERMEEERQRKAHAKTEANKPKKVTLPRLKFLDQK*
Ga0079218_101722692	3300007004	Agricultural Soil	MSKKPTGAAAGNSEAIRIYERMEEQRKQKVQAKAEANKPKKVTLAKLKFLDEK*
Ga0105679_103938681	3300007790	Soil	MSKKPTGVAAGNSEALRIYERVEEERQRKEQARAEAKKPKKVTLPRLKFLEDK*
Ga0105679_104169621	3300007790	Soil	MTRKKPTGVAAGNSEALRIFERMEEERQRKVQAKEEANKPKKVTLPRLKFLDSK*
Ga0111539_102035952	3300009094	Populus Rhizosphere	MSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER*
Ga0105091_101475882	3300009146	Freshwater Sediment	LDDQETTGVAAGNSEALRIYERMEEERQQKAQAKTEANKPKKVTLPRLKFLDQK*
Ga0111538_108640362	3300009156	Populus Rhizosphere	MSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFSDER*
Ga0111538_135205381	3300009156	Populus Rhizosphere	MSKKSTGDAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSLAKVKFLDEK*
Ga0111538_135466221	3300009156	Populus Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKVQAKAEASKPKKVTLPKLKFLGEK*
Ga0105242_114598742	3300009176	Miscanthus Rhizosphere	MTKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEASKPTKVTLPKLKFLDEK*
Ga0126307_100339502	3300009789	Serpentine Soil	MAGPISGSIEEIGMTKKPTGVAAGNSEAIRIFERMEEEQQRKAQAKAEANKPKKVTLPRLKFLDEK*
Ga0126307_100518355	3300009789	Serpentine Soil	MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDDK*
Ga0126307_100543045	3300009789	Serpentine Soil	MSKKSTGVAAGNSEAIRIYERMEEERRQKVQAKAEASKPKKVTLPKLRFLDQK*
Ga0126307_100841195	3300009789	Serpentine Soil	VSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEASKPKKVTLPRLKFLEKD*
Ga0126307_101902883	3300009789	Serpentine Soil	MSKKPTGTAAGNSEAMRIYERMEEERLRKIQAKAEANKPKKVTLPKLKFLDEK*
Ga0126307_103493162	3300009789	Serpentine Soil	MSKKPTAAAGNSEALRIYERMEEERQRKGQTKAEANKPKKVTLPKLKFLDER*
Ga0126307_106272581	3300009789	Serpentine Soil	MSKKPTGVAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLKFLDKD*
Ga0126307_107687711	3300009789	Serpentine Soil	MSKKPTGAAAGNSEAIRIYERMEEERKEKVQAKAEANKPKKVTLPRLK
Ga0126307_108030432	3300009789	Serpentine Soil	LSKKPTGAAAGNSEAIRIYEAMEQERKRKLDAKAEAAKPKKVTLPRLSFLDKR*
Ga0126307_114973761	3300009789	Serpentine Soil	RHPQEEPSMSKKPTGVAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLKFLDKD*
Ga0126307_116744672	3300009789	Serpentine Soil	MTKKTTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126313_102507652	3300009840	Serpentine Soil	MTKKPTGASAGNSEAMRIYERMEEERLRKLQVKAEASKPKKVTLPKLKFLDEK*
Ga0126313_104606363	3300009840	Serpentine Soil	MSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLEER*
Ga0126313_106973141	3300009840	Serpentine Soil	ETMNKKSTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126313_112343902	3300009840	Serpentine Soil	MAGPISGSIEEIWMTKKPTGVAAGNSEAIRIFERMEEEQQRKAQAKAEANKPKKVTLPRLKFLDEK*
Ga0126305_103077571	3300010036	Serpentine Soil	TGAAAGNAEAMRIYERMEEERLRKIQAKAGANKPKKVTLPKLKFLDEK*
Ga0126305_105082902	3300010036	Serpentine Soil	MNKKPTGAAAGDSEAMRIYGRMEEERLRKLQAKAEANKPKTVTLPKLKFLDWK*
Ga0126305_111057682	3300010036	Serpentine Soil	MSKKPTAAAGNSEALRIYERMEEERQRKVQTKAEANQPKKVTLPKLKFLDER*
Ga0126305_111491571	3300010036	Serpentine Soil	MSEKPTGAAAGTSEAMRIYERMEEERKQKLQAKTEANKPKKVTLPKLKFL
Ga0126304_103012523	3300010037	Serpentine Soil	TAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLRFLDER*
Ga0126304_106814991	3300010037	Serpentine Soil	MSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKAKKVTLPRLKFLDEK*
Ga0126304_107131292	3300010037	Serpentine Soil	MAKKTTGFAARDSEAIRIFERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK*
Ga0126304_112208531	3300010037	Serpentine Soil	MSKRPTGAAAGNSEAMRIYERMEEERLRKLQAKAEAHKPKKVTLPKLK
Ga0126315_100522233	3300010038	Serpentine Soil	MSKKPTGAAAGTSEAIRIYERMEEERKQKLQAKTEANKPKKVTLPKLKFLDQK*
Ga0126315_100586712	3300010038	Serpentine Soil	MGKKPSAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER*
Ga0126315_104000662	3300010038	Serpentine Soil	MTKKTTGAAAGNSEAMRIYERMEEERLRKLQVKAEANKPKKVTLPKLKFLNEK*
Ga0126315_105036192	3300010038	Serpentine Soil	MTKKTTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDKT*
Ga0126315_111809901	3300010038	Serpentine Soil	MSKKPTAAAANSEAVRIYERMEEERQRKGQTKAEANKPKKVTLPKLKFLDER*
Ga0126309_100264925	3300010039	Serpentine Soil	MSKKPTGAAPGDSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126309_107871161	3300010039	Serpentine Soil	MAKKTTGTAAGDSEAIRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLVEK*
Ga0126308_100992724	3300010040	Serpentine Soil	MTKKTTGAAAGNSEAMRIYERMEEERLRKIQAKSEANKPKKVTLPKLKFLDEK*
Ga0126308_105520421	3300010040	Serpentine Soil	MSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLRFLDER*
Ga0126308_106671871	3300010040	Serpentine Soil	MTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLGEE*
Ga0126308_107912351	3300010040	Serpentine Soil	LSKKPTGAPAGNSEAIRIYEAMEQERKRKLDAKAEAAKPKKVTLPRLSFLDKK*
Ga0126308_109847011	3300010040	Serpentine Soil	MAKKLTGAAAGNSEAMRIYERMEEERLRKLQVKAEANKPKKVTLPKLKFLNEK*
Ga0126308_112813112	3300010040	Serpentine Soil	MTKKPTGAAAGNSEAMRIYERLEEERQRKLQAKAEANKPKKVTLPKLKLAEK*
Ga0126312_100978946	3300010041	Serpentine Soil	MTKKPTGAAAGNSEAMRVYERMEEERVRKLQAKAEANKPKKVTLPKLKLDEK*
Ga0126312_103069571	3300010041	Serpentine Soil	MSKKRTESAAGNSEALRIYERMEEDRQRKVQAKAEASKPKKVTLPKVKFLDEK*
Ga0126312_104487071	3300010041	Serpentine Soil	MTKKPTGAAAGDSEAMRIYERMEEERLRKLQAKAEASKPKKVTLPKLKFLDEK*
Ga0126312_107959621	3300010041	Serpentine Soil	MSKKPTGAAGDSEAMRSYDRMEEERLRKLQAKGEANKPKKVTLPKLKFLDEK*
Ga0126312_112771291	3300010041	Serpentine Soil	MAKKTIGVAAGDSEAIRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLDEK*
Ga0126312_113318552	3300010041	Serpentine Soil	MSKKPTGAAAGNSEALRIYERMEEERKQKVQAKAEANQPKKVTLAKLKFLDEK*
Ga0126314_100207978	3300010042	Serpentine Soil	MTKKPTGAAVGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126314_109369291	3300010042	Serpentine Soil	MTKKPTGAAAGNSEAMRIYERMEEERLRKLQVKAEANKPKNVTLPNLSSWMRSRRR
Ga0126314_111776962	3300010042	Serpentine Soil	LSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0126314_113635561	3300010042	Serpentine Soil	AGDSEALRIYERMEEERQRKEQAKAEAKKPKKVTLPRVSFLDQK*
Ga0126310_102609882	3300010044	Serpentine Soil	MAKKTTGAAAGDSEAIRIFERMEEERKRKAQAKAEANKPKKVTLPRLKFLDEK*
Ga0126310_102959502	3300010044	Serpentine Soil	MTKKPTGAAAENSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDDK*
Ga0126310_104307191	3300010044	Serpentine Soil	MSKKPTGAAPGDSEATRIYERMEEERQRKEQAKAEAKKPKKVTLPRVSFLDQK*
Ga0126310_106222712	3300010044	Serpentine Soil	MNKKPTGAAAGDSEAMRIYGRMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126311_112689732	3300010045	Serpentine Soil	LSKKPTGAAAGNSEAIRIYEAMEQERKRKLDAKAEAAKPKKVTLPRLSFLDKK*
Ga0126311_112722342	3300010045	Serpentine Soil	MAKKLTGAAAGNSEAMRIYERMEEERLRKLQVKAEANKPKKVTLPKLKFLNEKQRPHSS*
Ga0126311_113079161	3300010045	Serpentine Soil	MAKKTTGAAAGDSEAIRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLDQK*
Ga0127456_12268881	3300010140	Grasslands Soil	KKREAPVSKSPTSAAAGNSEAIRIYEAMEQERKRKLEAKAEAAAKPKKVTLPRLSFLDKT
Ga0126306_101292712	3300010166	Serpentine Soil	MSKKPTAAAGNPEALRIYERMEEERQRKGQTKAEANKPKKVTLPKLKFLDER*
Ga0126306_104768811	3300010166	Serpentine Soil	MSKKPTGAAAGNSEAIRIYERMEEERKQKVQATAETNKPKKVSLAKVKFLDEK*
Ga0126306_105665802	3300010166	Serpentine Soil	MAKKTTGAAAGDSEAIRIFDRMEEERQRKAQAKAEARKPKKVTLPRLKFLDEK*
Ga0126306_109983383	3300010166	Serpentine Soil	TRETMTKKTTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPRLKFLDEK*
Ga0126306_110084653	3300010166	Serpentine Soil	MSKKPTGTAAGNSEAMRIYARMEEDRLRKIQAKAEANKPTKVTVPKLKFLDE
Ga0126306_110622422	3300010166	Serpentine Soil	MSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVTLAKLKFLDEK*
Ga0105246_103593133	3300011119	Miscanthus Rhizosphere	MSKKPTAAAANSEAARIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER*
Ga0105246_110329352	3300011119	Miscanthus Rhizosphere	VSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAVASKPKKVTLPRLKFMENE*
Ga0127502_106161292	3300011333	Soil	AAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSLAKVKFLDEK*
Ga0150985_1015313651	3300012212	Avena Fatua Rhizosphere	TMTKKRPDAPAGDSEALRIYERMEEERQRKEQAKAEAKKPKKVTLPRVSFLDPK*
Ga0150985_1032372401	3300012212	Avena Fatua Rhizosphere	MSRKPRGDAAGNPEAARIYEAMEEERKRKLEARAEAAKPKKVTLPRLKFLEDK*
Ga0150985_1036731742	3300012212	Avena Fatua Rhizosphere	VPGGSARLVLAQDDEASMSKKPTSLGNAGNSEAIRIYEAMEQERKRKLEAKAEANKPKKVTLPRLKFMEKD*
Ga0150985_1047847271	3300012212	Avena Fatua Rhizosphere	MAGPVNHQLRVEMSKKRTGVAAGDSEAIRIYERMEEERQRNVQAKAEANKPKKVRLPRITLLNEK*
Ga0150985_1062220302	3300012212	Avena Fatua Rhizosphere	MSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFLEEK*
Ga0150985_1070886712	3300012212	Avena Fatua Rhizosphere	LSKSPTGAAAGNSEAIRIYEAMEQERKRKLETKAEAAKPKKVTLPRLSFLDKK*
Ga0150985_1074816801	3300012212	Avena Fatua Rhizosphere	RKPTGVAAGRSEASRIYERMEEERQRKLQAKAEANKPKKVTLPRVRLLDSK*
Ga0150985_1093408232	3300012212	Avena Fatua Rhizosphere	MSKKRTGVAAGDSEAIRIYERMEEERKRKVQTKVEASKPKKVTMPSLKFLDKE*
Ga0150985_1101395492	3300012212	Avena Fatua Rhizosphere	MNKKRSDAAAGDSEALRIYERMEEERQRKEQARAEAKKPKKVTLPRVSFLDPK*
Ga0150985_1151991712	3300012212	Avena Fatua Rhizosphere	LSKRPTGAAAGNSEAIRIYESMEQERKRKLETKAEAAKPKKVTLPRLSFLDKK*
Ga0150985_1187804542	3300012212	Avena Fatua Rhizosphere	GNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0150985_1201528682	3300012212	Avena Fatua Rhizosphere	MTKKPTGAAAGNSEAMRIYERMQEERQRKLHAKAEASKPKKVTLPKLKFLDEK*
Ga0150984_1005542452	3300012469	Avena Fatua Rhizosphere	MSKKPTSLGNAGNSEAIRIYEAMEQERKRKLEAKAEANKPKKVTLPRLKFMEKD*
Ga0150984_1030266292	3300012469	Avena Fatua Rhizosphere	MTKKRPDAPAGDSEALRIYERMEEERQRKEQAKAEAKKPKKVTLPRVSFLDPK*
Ga0150984_1076574602	3300012469	Avena Fatua Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEAKKPKKVTMPKLKFLDEK*
Ga0150984_1082456201	3300012469	Avena Fatua Rhizosphere	AAGNSEAIRIYEAMEQERQRKLDAKAEAARPKKVTLPRLSFLDKK*
Ga0150984_1096035481	3300012469	Avena Fatua Rhizosphere	MTKKTTGTAAGNSEAMRIYERMEEERQRKVQAKAEANKPEKVTLPKLKFLDEK*
Ga0150984_1107830971	3300012469	Avena Fatua Rhizosphere	LSKSPAGAAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0150984_1145484631	3300012469	Avena Fatua Rhizosphere	PLRLGSQMTKKPTGTAAGNCEAMRIYERLEEERLRKLQAKAEASKPKKVTLPKLKFLDEK
Ga0150984_1195697511	3300012469	Avena Fatua Rhizosphere	MSKKRTGEAAGNSEAIRIYERMEEERQRKVQAKAEASKPKKVTLPRITLLNDK*
Ga0150984_1203430501	3300012469	Avena Fatua Rhizosphere	MNKKRSDASAGDSEALRIYERMEEERLRKEQAKAEAKKPKKVTLPRVSFLDPK*
Ga0150984_1207139611	3300012469	Avena Fatua Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEAKKPKKVTMPKLKFL
Ga0150984_1236196172	3300012469	Avena Fatua Rhizosphere	LSKSPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0164303_110783882	3300012957	Soil	MTKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKAKKVTLPKLKFLDEK*
Ga0157378_124938181	3300013297	Miscanthus Rhizosphere	VSKKASGSAAGNAEAIRIYEKMEEERKRKLAAKAEASKPKKVTLPRLKFLEGE*
Ga0163162_108642521	3300013306	Switchgrass Rhizosphere	MSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFLEGE*
Ga0163162_113393881	3300013306	Switchgrass Rhizosphere	MSKKSTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLEER*
Ga0163163_129843512	3300014325	Switchgrass Rhizosphere	MSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPQLKFILGQ*
Ga0157380_122539912	3300014326	Switchgrass Rhizosphere	MSKKASGSAAGNSEAIRIYEAMEAERKRKLAAKAEASKSKKVTLPRLKFLEGE*
Ga0157377_109111691	3300014745	Miscanthus Rhizosphere	KGLDSMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER*
Ga0173483_100950671	3300015077	Soil	TGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLDEK*
Ga0173483_104616271	3300015077	Soil	MGKKPSAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPR
Ga0173480_111062631	3300015200	Soil	LGVSETASGSAAGNSEAIRIYEAMEAERKRKLAAKAEASKSKKVTLPRLKFMEGE*
Ga0182005_11518511	3300015265	Rhizosphere	RVLSGDGPEGAPALSKKQTGAGAGDSEAIRIYEAMEQERKRKLEAKAEAVKPKKVTLPRLSFLDKK*
Ga0163161_117567322	3300017792	Switchgrass Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Ga0184611_13452311	3300018067	Groundwater Sediment	SVAVPRLAGRVGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPEKVTLPKLKFLDEK
Ga0190265_111488381	3300018422	Soil	MPKKPNGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK
Ga0190265_121099362	3300018422	Soil	MKQRATGPAAGNSEAVRILDAREQERKHKLEAKAEAAKPKKVTLPRLKFLDQ
Ga0190275_104826181	3300018432	Soil	LIGSEDIWMTKKPTGVAAGNSEAIRIYERMEEKRQRKAEAKTEANKPKKVTLPRLKFLDQ
Ga0190275_110561022	3300018432	Soil	VIRVEPELVAFLSIEDPMAKKTTGGAAGDSEAIRIFERMEEERQRKAQARAEANKPKKVTLPRIKFLDQK
Ga0190275_117917732	3300018432	Soil	MTKKTTGAAAGDSEAIRIFERMEEERQRKARAKAEANKPKKVTLPRLKFLDQK
Ga0190275_120081693	3300018432	Soil	VSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEASKPKKVTLPRLKFLEKD
Ga0190275_123401951	3300018432	Soil	MAKKTTGAGTGDSEAIRIFDRMEEERQRKAQAKAEANKPKKVTLPRLKFLDEK
Ga0190275_129951881	3300018432	Soil	MTKKPTGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK
Ga0190269_104708313	3300018465	Soil	MSKKPTGVAAGNSEALRIYERMEEERKRKEQTKAEANKPKKVTLPRLKFMEDK
Ga0190269_117378131	3300018465	Soil	MTRKKPTGVAAGNSEAVRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLDPK
Ga0190269_119118321	3300018465	Soil	MSKKPTGVAAGNSEALRIYEKMEEERKRKEQAKAEANKPKRVTLPRLKFMDDK
Ga0190268_102412352	3300018466	Soil	MAKKTTGAAAGDSEAIRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLDQK
Ga0190268_114172282	3300018466	Soil	MSKKPTGAAAGNSEALRIYERMGEERKQKEQARGEANKPKKVTLPRLKFMEDK
Ga0190270_101576393	3300018469	Soil	MSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER
Ga0190270_103367272	3300018469	Soil	MTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEANKPKKVTLPKLKFLDEK
Ga0190270_103526211	3300018469	Soil	VSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFMERE
Ga0190270_103820863	3300018469	Soil	MRKKPSGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK
Ga0190270_109280422	3300018469	Soil	MSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSLAKVKFLDEK
Ga0190271_118012692	3300018481	Soil	MSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPKLKFLDER
Ga0190271_127419121	3300018481	Soil	MTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEANKPKKVTLPKPKFLDEK
Ga0190271_131497222	3300018481	Soil	MTKKPTGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDPK
Ga0190273_109524171	3300018920	Soil	MSKKATGSAAGNSEAIRIYEKMEEERKRKLAAKAEAGRPKKVTLPRLKFMEKE
Ga0173481_105624481	3300019356	Soil	GSSEAATEQRETMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEANKPKKVTLPKLKFLDEK
Ga0190264_107453012	3300019377	Soil	MSKKPTGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK
Ga0190267_104869002	3300019767	Soil	LGYADRTTNEDQRMSKRPSGAAAGDSEALRIYERMEEERQRKEQAKAEAKKPKKVTLPKVSFLEEK
Ga0190267_105935991	3300019767	Soil	MSKKASGSGAGDSEAIRIYEKMEEERKRKLATKAEASKPKKVTLPRLKFLDGE
Ga0190267_108469981	3300019767	Soil	MTKKPTGAAVGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Ga0190267_111105142	3300019767	Soil	MSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKPKKVTLPRLKFLEND
Ga0190267_113890171	3300019767	Soil	MAKKKAGAAAGDSEAIRIYERMEEERQRKAQAKAEANKPKKVTLPRLKFLDQK
Ga0196960_103388952	3300024426	Soil	TMSKKPTGAAAGDSEAIRIYERMEEERRRKEQAREEAKKPKKVTLPRLKFLDEK
Ga0207643_104053451	3300025908	Miscanthus Rhizosphere	IGGQPKRWTDLMSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKPEKVTLPRLKFMEGE
Ga0207670_117150102	3300025936	Switchgrass Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTL
Ga0207669_100094365	3300025937	Miscanthus Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEAKKPKKVTMPKLKFLDEK
Ga0207689_110924722	3300025942	Miscanthus Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLLKLQAKAEANKPKKVTLPKLKFLDEK
Ga0207678_113665922	3300026067	Corn Rhizosphere	MSKKPTGAAAGNSEAIRIYEAMEEERKRKLAAKAEARKPKKVTLPRLKFMEKE
Ga0207683_102496702	3300026121	Miscanthus Rhizosphere	VSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFMEGEGE
Ga0209382_110939272	3300027909	Populus Rhizosphere	MTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLGEK
Ga0209382_121487792	3300027909	Populus Rhizosphere	MSKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Ga0247822_115329051	3300028592	Soil	MSKKLTGAAAGNSEAIRIYERMEEERQRKVQAKAEASKPKKVTLPKLRFLEQR
Ga0308201_100637003	3300031091	Soil	MSKKPTGVAAGNSEALRIYERMEEERQRKEQAKHDAKKSKKVSLARVSFLDK
Ga0310886_103222402	3300031562	Soil	MSKKPTAAAANSEAVRIYERMEEERQRKMQTKAEANQPKKVTLPRLKFLDER
Ga0310900_107780752	3300031908	Soil	MSFESDSEAARIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER
Ga0310900_116533241	3300031908	Soil	MTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLDEK
Ga0307412_116592902	3300031911	Rhizosphere	MSKKSTGVAAGNSEAIRIYERLEEERQQKVQANAEASKPKKVTLPKLRFLDRK
Ga0310906_114683231	3300032013	Soil	MSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSLAKGKFLDEK
Ga0307415_1021796912	3300032126	Rhizosphere	MSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVTLAKLKFLDEK
Ga0247830_112782951	3300033551	Soil	MSKKPTGAAGDSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Ga0334936_054752_658_819	3300034007	Biocrust	VSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEASKPKKVTLPRLKFLDKD
Ga0334933_075746_342_503	3300034136	Sub-Biocrust Soil	VSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLKFLDKD
Ga0372943_0473135_208_369	3300034268	Soil	MSKKPTGVAAGNSEAIRIYEAMEEERKRKLAAKAEASKPKKVTLPRLKFMDKD
Ga0314792_106712_574_702	3300034667	Soil	MSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTL
Ga0314794_047240_96_254	3300034669	Soil	MSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLRFLDER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F029479

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences