NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F029479

Metagenome / Metatranscriptome Family F029479

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F029479
Family Type Metagenome / Metatranscriptome
Number of Sequences 188
Average Sequence Length 53 residues
Representative Sequence MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Number of Associated Samples 82
Number of Associated Scaffolds 188

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 79.79 %
% of genes near scaffold ends (potentially truncated) 25.53 %
% of genes from short scaffolds (< 2000 bps) 93.62 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (63.830 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil
(31.383 % of family members)
Environment Ontology (ENVO) Unclassified
(38.298 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(46.809 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.
1SwBSRL2_0008.00000250
2JGI12396J12026_10171192
3C688J35102_1193080061
4C688J35102_1198750661
5C688J35102_1205843701
6C688J35102_1206135472
7C688J35102_1207102913
8C688J35102_1208244121
9C688J35102_1209645267
10Ga0063454_1004756873
11Ga0063454_1005938562
12Ga0063454_1017462251
13Ga0063454_1018856461
14Ga0063455_1015227062
15Ga0070676_109198962
16Ga0070670_1008171962
17Ga0070674_1016694852
18Ga0070674_1021192292
19Ga0070700_1014424991
20Ga0070678_1007049931
21Ga0070672_1016290611
22Ga0075422_104506842
23Ga0068871_1003899472
24Ga0075428_1009500803
25Ga0075421_1011745011
26Ga0075421_1027280701
27Ga0075431_1019909502
28Ga0079217_116286441
29Ga0079218_101722692
30Ga0105679_103938681
31Ga0105679_104169621
32Ga0111539_102035952
33Ga0105091_101475882
34Ga0111538_108640362
35Ga0111538_135205381
36Ga0111538_135466221
37Ga0105242_114598742
38Ga0126307_100339502
39Ga0126307_100518355
40Ga0126307_100543045
41Ga0126307_100841195
42Ga0126307_101902883
43Ga0126307_103493162
44Ga0126307_106272581
45Ga0126307_107687711
46Ga0126307_108030432
47Ga0126307_114973761
48Ga0126307_116744672
49Ga0126313_102507652
50Ga0126313_104606363
51Ga0126313_106973141
52Ga0126313_112343902
53Ga0126305_103077571
54Ga0126305_105082902
55Ga0126305_111057682
56Ga0126305_111491571
57Ga0126304_103012523
58Ga0126304_106814991
59Ga0126304_107131292
60Ga0126304_112208531
61Ga0126315_100522233
62Ga0126315_100586712
63Ga0126315_104000662
64Ga0126315_105036192
65Ga0126315_111809901
66Ga0126309_100264925
67Ga0126309_107871161
68Ga0126308_100992724
69Ga0126308_105520421
70Ga0126308_106671871
71Ga0126308_107912351
72Ga0126308_109847011
73Ga0126308_112813112
74Ga0126312_100978946
75Ga0126312_103069571
76Ga0126312_104487071
77Ga0126312_107959621
78Ga0126312_112771291
79Ga0126312_113318552
80Ga0126314_100207978
81Ga0126314_109369291
82Ga0126314_111776962
83Ga0126314_113635561
84Ga0126310_102609882
85Ga0126310_102959502
86Ga0126310_104307191
87Ga0126310_106222712
88Ga0126311_112689732
89Ga0126311_112722342
90Ga0126311_113079161
91Ga0127456_12268881
92Ga0126306_101292712
93Ga0126306_104768811
94Ga0126306_105665802
95Ga0126306_109983383
96Ga0126306_110084653
97Ga0126306_110622422
98Ga0105246_103593133
99Ga0105246_110329352
100Ga0127502_106161292
101Ga0150985_1015313651
102Ga0150985_1032372401
103Ga0150985_1036731742
104Ga0150985_1047847271
105Ga0150985_1062220302
106Ga0150985_1070886712
107Ga0150985_1074816801
108Ga0150985_1093408232
109Ga0150985_1101395492
110Ga0150985_1151991712
111Ga0150985_1187804542
112Ga0150985_1201528682
113Ga0150984_1005542452
114Ga0150984_1030266292
115Ga0150984_1076574602
116Ga0150984_1082456201
117Ga0150984_1096035481
118Ga0150984_1107830971
119Ga0150984_1145484631
120Ga0150984_1195697511
121Ga0150984_1203430501
122Ga0150984_1207139611
123Ga0150984_1236196172
124Ga0164303_110783882
125Ga0157378_124938181
126Ga0163162_108642521
127Ga0163162_113393881
128Ga0163163_129843512
129Ga0157380_122539912
130Ga0157377_109111691
131Ga0173483_100950671
132Ga0173483_104616271
133Ga0173480_111062631
134Ga0182005_11518511
135Ga0163161_117567322
136Ga0184611_13452311
137Ga0190265_111488381
138Ga0190265_121099362
139Ga0190275_104826181
140Ga0190275_110561022
141Ga0190275_117917732
142Ga0190275_120081693
143Ga0190275_123401951
144Ga0190275_129951881
145Ga0190269_104708313
146Ga0190269_117378131
147Ga0190269_119118321
148Ga0190268_102412352
149Ga0190268_114172282
150Ga0190270_101576393
151Ga0190270_103367272
152Ga0190270_103526211
153Ga0190270_103820863
154Ga0190270_109280422
155Ga0190271_118012692
156Ga0190271_127419121
157Ga0190271_131497222
158Ga0190273_109524171
159Ga0173481_105624481
160Ga0190264_107453012
161Ga0190267_104869002
162Ga0190267_105935991
163Ga0190267_108469981
164Ga0190267_111105142
165Ga0190267_113890171
166Ga0196960_103388952
167Ga0207643_104053451
168Ga0207670_117150102
169Ga0207669_100094365
170Ga0207689_110924722
171Ga0207678_113665922
172Ga0207683_102496702
173Ga0209382_110939272
174Ga0209382_121487792
175Ga0247822_115329051
176Ga0308201_100637003
177Ga0310886_103222402
178Ga0310900_107780752
179Ga0310900_116533241
180Ga0307412_116592902
181Ga0310906_114683231
182Ga0307415_1021796912
183Ga0247830_112782951
184Ga0334936_054752_658_819
185Ga0334933_075746_342_503
186Ga0372943_0473135_208_369
187Ga0314792_106712_574_702
188Ga0314794_047240_96_254
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.80%    β-sheet: 0.00%    Coil/Unstructured: 64.20%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035404550MTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEKSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
36.2%63.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Soil
Groundwater Sediment
Soil
Serpentine Soil
Grasslands Soil
Switchgrass Rhizosphere
Agricultural Soil
Sub-Biocrust Soil
Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Biocrust
Soil
Soil
Avena Fatua Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
18.1%31.4%4.3%6.4%6.4%5.9%5.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
SwBSRL2_0008.000002502162886013Switchgrass RhizosphereMSKKPTAAAANSERQRKVQTKAEANQPKKVTLPRLRFLDER
JGI12396J12026_101711923300000827SoilMSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKSEARKPKKVTLPRLSFLEKD*
C688J35102_11930800613300002568SoilMSMSKKPTGVAAGNSEALRIYERMEEERQRKVQAKAEANKPKKVTLPKLKFLDQK*
C688J35102_11987506613300002568SoilLSKAPTGAAAGNSEAVRIYEAMEQERQRKLEAKAEAAKPKKVSLPRLSFLDKK*
C688J35102_12058437013300002568SoilPSAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLEER*
C688J35102_12061354723300002568SoilMTKKPTGAAAGNSEAMRIYERMEEERLLKLQAKAEANKPKKVTLPKLKFLDEK*
C688J35102_12071029133300002568SoilMTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
C688J35102_12082441213300002568SoilMTKKPTGAAVGNSEAMRIYERMEEERLRKPQAKAEANKPKKVTLPKLKFLDEK*
C688J35102_12096452673300002568SoilMTKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0063454_10047568733300004081SoilMSKKATGVAAGNAEAMRIYERMEEERQRKVQAKAKANKPKKVTLPKVTFLDRN*
Ga0063454_10059385623300004081SoilGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0063454_10174622513300004081SoilTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPRKVTLPKLKFLNEK*
Ga0063454_10188564613300004081SoilLSKKPTGAAAGNSEAIRIYEAMEQEGKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0063455_10152270623300004153SoilLSKTRTGAAGGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVSLPKLSFLDRK*
Ga0070676_1091989623300005328Miscanthus RhizosphereVSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFM
Ga0070670_10081719623300005331Switchgrass RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLLKLQAKAEANQPKKVTLPKLKFLDEK*
Ga0070674_10166948523300005356Miscanthus RhizosphereKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFMEGGNT*
Ga0070674_10211922923300005356Miscanthus RhizosphereTGAAAGNSEAMRIYERMEEERLRKLQAKAEAKKPKKVTMPKLKFLDEK*
Ga0070700_10144249913300005441Corn, Switchgrass And Miscanthus RhizosphereMSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSL
Ga0070678_10070499313300005456Miscanthus RhizosphereVSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFLEGE*
Ga0070672_10162906113300005543Miscanthus RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKVQAKAEASKPKKVTLPKLKFLDEK*
Ga0075422_1045068423300006196Populus RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERVRKLQAKAEANKPGKVTLPKLTFLDEK*
Ga0068871_10038994723300006358Miscanthus RhizosphereMSKKASGSAAGNSEAIRIYEKMEEERKRKLAAAEAEASKSKKVTLPRLKFMEGDNT*
Ga0075428_10095008033300006844Populus RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLGEK*
Ga0075421_10117450113300006845Populus RhizosphereMSKKPTAAAANSERQRKVQTKAEANQPKKVTLPRLRFLDER*
Ga0075421_10272807013300006845Populus RhizosphereMSKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0075431_10199095023300006847Populus RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPK
Ga0079217_1162864413300006876Agricultural SoilMTKQPTGVAAGNSEAIRIYERMEEERQRKAHAKTEANKPKKVTLPRLKFLDQK*
Ga0079218_1017226923300007004Agricultural SoilMSKKPTGAAAGNSEAIRIYERMEEQRKQKVQAKAEANKPKKVTLAKLKFLDEK*
Ga0105679_1039386813300007790SoilMSKKPTGVAAGNSEALRIYERVEEERQRKEQARAEAKKPKKVTLPRLKFLEDK*
Ga0105679_1041696213300007790SoilMTRKKPTGVAAGNSEALRIFERMEEERQRKVQAKEEANKPKKVTLPRLKFLDSK*
Ga0111539_1020359523300009094Populus RhizosphereMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER*
Ga0105091_1014758823300009146Freshwater SedimentLDDQETTGVAAGNSEALRIYERMEEERQQKAQAKTEANKPKKVTLPRLKFLDQK*
Ga0111538_1086403623300009156Populus RhizosphereMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFSDER*
Ga0111538_1352053813300009156Populus RhizosphereMSKKSTGDAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSLAKVKFLDEK*
Ga0111538_1354662213300009156Populus RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKVQAKAEASKPKKVTLPKLKFLGEK*
Ga0105242_1145987423300009176Miscanthus RhizosphereMTKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEASKPTKVTLPKLKFLDEK*
Ga0126307_1003395023300009789Serpentine SoilMAGPISGSIEEIGMTKKPTGVAAGNSEAIRIFERMEEEQQRKAQAKAEANKPKKVTLPRLKFLDEK*
Ga0126307_1005183553300009789Serpentine SoilMTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDDK*
Ga0126307_1005430453300009789Serpentine SoilMSKKSTGVAAGNSEAIRIYERMEEERRQKVQAKAEASKPKKVTLPKLRFLDQK*
Ga0126307_1008411953300009789Serpentine SoilVSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEASKPKKVTLPRLKFLEKD*
Ga0126307_1019028833300009789Serpentine SoilMSKKPTGTAAGNSEAMRIYERMEEERLRKIQAKAEANKPKKVTLPKLKFLDEK*
Ga0126307_1034931623300009789Serpentine SoilMSKKPTAAAGNSEALRIYERMEEERQRKGQTKAEANKPKKVTLPKLKFLDER*
Ga0126307_1062725813300009789Serpentine SoilMSKKPTGVAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLKFLDKD*
Ga0126307_1076877113300009789Serpentine SoilMSKKPTGAAAGNSEAIRIYERMEEERKEKVQAKAEANKPKKVTLPRLK
Ga0126307_1080304323300009789Serpentine SoilLSKKPTGAAAGNSEAIRIYEAMEQERKRKLDAKAEAAKPKKVTLPRLSFLDKR*
Ga0126307_1149737613300009789Serpentine SoilRHPQEEPSMSKKPTGVAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLKFLDKD*
Ga0126307_1167446723300009789Serpentine SoilMTKKTTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126313_1025076523300009840Serpentine SoilMTKKPTGASAGNSEAMRIYERMEEERLRKLQVKAEASKPKKVTLPKLKFLDEK*
Ga0126313_1046063633300009840Serpentine SoilMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLEER*
Ga0126313_1069731413300009840Serpentine SoilETMNKKSTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126313_1123439023300009840Serpentine SoilMAGPISGSIEEIWMTKKPTGVAAGNSEAIRIFERMEEEQQRKAQAKAEANKPKKVTLPRLKFLDEK*
Ga0126305_1030775713300010036Serpentine SoilTGAAAGNAEAMRIYERMEEERLRKIQAKAGANKPKKVTLPKLKFLDEK*
Ga0126305_1050829023300010036Serpentine SoilMNKKPTGAAAGDSEAMRIYGRMEEERLRKLQAKAEANKPKTVTLPKLKFLDWK*
Ga0126305_1110576823300010036Serpentine SoilMSKKPTAAAGNSEALRIYERMEEERQRKVQTKAEANQPKKVTLPKLKFLDER*
Ga0126305_1114915713300010036Serpentine SoilMSEKPTGAAAGTSEAMRIYERMEEERKQKLQAKTEANKPKKVTLPKLKFL
Ga0126304_1030125233300010037Serpentine SoilTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLRFLDER*
Ga0126304_1068149913300010037Serpentine SoilMSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKAKKVTLPRLKFLDEK*
Ga0126304_1071312923300010037Serpentine SoilMAKKTTGFAARDSEAIRIFERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK*
Ga0126304_1122085313300010037Serpentine SoilMSKRPTGAAAGNSEAMRIYERMEEERLRKLQAKAEAHKPKKVTLPKLK
Ga0126315_1005222333300010038Serpentine SoilMSKKPTGAAAGTSEAIRIYERMEEERKQKLQAKTEANKPKKVTLPKLKFLDQK*
Ga0126315_1005867123300010038Serpentine SoilMGKKPSAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER*
Ga0126315_1040006623300010038Serpentine SoilMTKKTTGAAAGNSEAMRIYERMEEERLRKLQVKAEANKPKKVTLPKLKFLNEK*
Ga0126315_1050361923300010038Serpentine SoilMTKKTTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDKT*
Ga0126315_1118099013300010038Serpentine SoilMSKKPTAAAANSEAVRIYERMEEERQRKGQTKAEANKPKKVTLPKLKFLDER*
Ga0126309_1002649253300010039Serpentine SoilMSKKPTGAAPGDSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126309_1078711613300010039Serpentine SoilMAKKTTGTAAGDSEAIRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLVEK*
Ga0126308_1009927243300010040Serpentine SoilMTKKTTGAAAGNSEAMRIYERMEEERLRKIQAKSEANKPKKVTLPKLKFLDEK*
Ga0126308_1055204213300010040Serpentine SoilMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLRFLDER*
Ga0126308_1066718713300010040Serpentine SoilMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLGEE*
Ga0126308_1079123513300010040Serpentine SoilLSKKPTGAPAGNSEAIRIYEAMEQERKRKLDAKAEAAKPKKVTLPRLSFLDKK*
Ga0126308_1098470113300010040Serpentine SoilMAKKLTGAAAGNSEAMRIYERMEEERLRKLQVKAEANKPKKVTLPKLKFLNEK*
Ga0126308_1128131123300010040Serpentine SoilMTKKPTGAAAGNSEAMRIYERLEEERQRKLQAKAEANKPKKVTLPKLKLAEK*
Ga0126312_1009789463300010041Serpentine SoilMTKKPTGAAAGNSEAMRVYERMEEERVRKLQAKAEANKPKKVTLPKLKLDEK*
Ga0126312_1030695713300010041Serpentine SoilMSKKRTESAAGNSEALRIYERMEEDRQRKVQAKAEASKPKKVTLPKVKFLDEK*
Ga0126312_1044870713300010041Serpentine SoilMTKKPTGAAAGDSEAMRIYERMEEERLRKLQAKAEASKPKKVTLPKLKFLDEK*
Ga0126312_1079596213300010041Serpentine SoilMSKKPTGAAGDSEAMRSYDRMEEERLRKLQAKGEANKPKKVTLPKLKFLDEK*
Ga0126312_1127712913300010041Serpentine SoilMAKKTIGVAAGDSEAIRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLDEK*
Ga0126312_1133185523300010041Serpentine SoilMSKKPTGAAAGNSEALRIYERMEEERKQKVQAKAEANQPKKVTLAKLKFLDEK*
Ga0126314_1002079783300010042Serpentine SoilMTKKPTGAAVGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126314_1093692913300010042Serpentine SoilMTKKPTGAAAGNSEAMRIYERMEEERLRKLQVKAEANKPKNVTLPNLSSWMRSRRR
Ga0126314_1117769623300010042Serpentine SoilLSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0126314_1136355613300010042Serpentine SoilAGDSEALRIYERMEEERQRKEQAKAEAKKPKKVTLPRVSFLDQK*
Ga0126310_1026098823300010044Serpentine SoilMAKKTTGAAAGDSEAIRIFERMEEERKRKAQAKAEANKPKKVTLPRLKFLDEK*
Ga0126310_1029595023300010044Serpentine SoilMTKKPTGAAAENSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDDK*
Ga0126310_1043071913300010044Serpentine SoilMSKKPTGAAPGDSEATRIYERMEEERQRKEQAKAEAKKPKKVTLPRVSFLDQK*
Ga0126310_1062227123300010044Serpentine SoilMNKKPTGAAAGDSEAMRIYGRMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK*
Ga0126311_1126897323300010045Serpentine SoilLSKKPTGAAAGNSEAIRIYEAMEQERKRKLDAKAEAAKPKKVTLPRLSFLDKK*
Ga0126311_1127223423300010045Serpentine SoilMAKKLTGAAAGNSEAMRIYERMEEERLRKLQVKAEANKPKKVTLPKLKFLNEKQRPHSS*
Ga0126311_1130791613300010045Serpentine SoilMAKKTTGAAAGDSEAIRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLDQK*
Ga0127456_122688813300010140Grasslands SoilKKREAPVSKSPTSAAAGNSEAIRIYEAMEQERKRKLEAKAEAAAKPKKVTLPRLSFLDKT
Ga0126306_1012927123300010166Serpentine SoilMSKKPTAAAGNPEALRIYERMEEERQRKGQTKAEANKPKKVTLPKLKFLDER*
Ga0126306_1047688113300010166Serpentine SoilMSKKPTGAAAGNSEAIRIYERMEEERKQKVQATAETNKPKKVSLAKVKFLDEK*
Ga0126306_1056658023300010166Serpentine SoilMAKKTTGAAAGDSEAIRIFDRMEEERQRKAQAKAEARKPKKVTLPRLKFLDEK*
Ga0126306_1099833833300010166Serpentine SoilTRETMTKKTTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPRLKFLDEK*
Ga0126306_1100846533300010166Serpentine SoilMSKKPTGTAAGNSEAMRIYARMEEDRLRKIQAKAEANKPTKVTVPKLKFLDE
Ga0126306_1106224223300010166Serpentine SoilMSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVTLAKLKFLDEK*
Ga0105246_1035931333300011119Miscanthus RhizosphereMSKKPTAAAANSEAARIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER*
Ga0105246_1103293523300011119Miscanthus RhizosphereVSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAVASKPKKVTLPRLKFMENE*
Ga0127502_1061612923300011333SoilAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSLAKVKFLDEK*
Ga0150985_10153136513300012212Avena Fatua RhizosphereTMTKKRPDAPAGDSEALRIYERMEEERQRKEQAKAEAKKPKKVTLPRVSFLDPK*
Ga0150985_10323724013300012212Avena Fatua RhizosphereMSRKPRGDAAGNPEAARIYEAMEEERKRKLEARAEAAKPKKVTLPRLKFLEDK*
Ga0150985_10367317423300012212Avena Fatua RhizosphereVPGGSARLVLAQDDEASMSKKPTSLGNAGNSEAIRIYEAMEQERKRKLEAKAEANKPKKVTLPRLKFMEKD*
Ga0150985_10478472713300012212Avena Fatua RhizosphereMAGPVNHQLRVEMSKKRTGVAAGDSEAIRIYERMEEERQRNVQAKAEANKPKKVRLPRITLLNEK*
Ga0150985_10622203023300012212Avena Fatua RhizosphereMSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFLEEK*
Ga0150985_10708867123300012212Avena Fatua RhizosphereLSKSPTGAAAGNSEAIRIYEAMEQERKRKLETKAEAAKPKKVTLPRLSFLDKK*
Ga0150985_10748168013300012212Avena Fatua RhizosphereRKPTGVAAGRSEASRIYERMEEERQRKLQAKAEANKPKKVTLPRVRLLDSK*
Ga0150985_10934082323300012212Avena Fatua RhizosphereMSKKRTGVAAGDSEAIRIYERMEEERKRKVQTKVEASKPKKVTMPSLKFLDKE*
Ga0150985_11013954923300012212Avena Fatua RhizosphereMNKKRSDAAAGDSEALRIYERMEEERQRKEQARAEAKKPKKVTLPRVSFLDPK*
Ga0150985_11519917123300012212Avena Fatua RhizosphereLSKRPTGAAAGNSEAIRIYESMEQERKRKLETKAEAAKPKKVTLPRLSFLDKK*
Ga0150985_11878045423300012212Avena Fatua RhizosphereGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0150985_12015286823300012212Avena Fatua RhizosphereMTKKPTGAAAGNSEAMRIYERMQEERQRKLHAKAEASKPKKVTLPKLKFLDEK*
Ga0150984_10055424523300012469Avena Fatua RhizosphereMSKKPTSLGNAGNSEAIRIYEAMEQERKRKLEAKAEANKPKKVTLPRLKFMEKD*
Ga0150984_10302662923300012469Avena Fatua RhizosphereMTKKRPDAPAGDSEALRIYERMEEERQRKEQAKAEAKKPKKVTLPRVSFLDPK*
Ga0150984_10765746023300012469Avena Fatua RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEAKKPKKVTMPKLKFLDEK*
Ga0150984_10824562013300012469Avena Fatua RhizosphereAAGNSEAIRIYEAMEQERQRKLDAKAEAARPKKVTLPRLSFLDKK*
Ga0150984_10960354813300012469Avena Fatua RhizosphereMTKKTTGTAAGNSEAMRIYERMEEERQRKVQAKAEANKPEKVTLPKLKFLDEK*
Ga0150984_11078309713300012469Avena Fatua RhizosphereLSKSPAGAAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0150984_11454846313300012469Avena Fatua RhizospherePLRLGSQMTKKPTGTAAGNCEAMRIYERLEEERLRKLQAKAEASKPKKVTLPKLKFLDEK
Ga0150984_11956975113300012469Avena Fatua RhizosphereMSKKRTGEAAGNSEAIRIYERMEEERQRKVQAKAEASKPKKVTLPRITLLNDK*
Ga0150984_12034305013300012469Avena Fatua RhizosphereMNKKRSDASAGDSEALRIYERMEEERLRKEQAKAEAKKPKKVTLPRVSFLDPK*
Ga0150984_12071396113300012469Avena Fatua RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEAKKPKKVTMPKLKFL
Ga0150984_12361961723300012469Avena Fatua RhizosphereLSKSPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLSFLDKK*
Ga0164303_1107838823300012957SoilMTKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKAKKVTLPKLKFLDEK*
Ga0157378_1249381813300013297Miscanthus RhizosphereVSKKASGSAAGNAEAIRIYEKMEEERKRKLAAKAEASKPKKVTLPRLKFLEGE*
Ga0163162_1086425213300013306Switchgrass RhizosphereMSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFLEGE*
Ga0163162_1133938813300013306Switchgrass RhizosphereMSKKSTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLEER*
Ga0163163_1298435123300014325Switchgrass RhizosphereMSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPQLKFILGQ*
Ga0157380_1225399123300014326Switchgrass RhizosphereMSKKASGSAAGNSEAIRIYEAMEAERKRKLAAKAEASKSKKVTLPRLKFLEGE*
Ga0157377_1091116913300014745Miscanthus RhizosphereKGLDSMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER*
Ga0173483_1009506713300015077SoilTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLDEK*
Ga0173483_1046162713300015077SoilMGKKPSAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPR
Ga0173480_1110626313300015200SoilLGVSETASGSAAGNSEAIRIYEAMEAERKRKLAAKAEASKSKKVTLPRLKFMEGE*
Ga0182005_115185113300015265RhizosphereRVLSGDGPEGAPALSKKQTGAGAGDSEAIRIYEAMEQERKRKLEAKAEAVKPKKVTLPRLSFLDKK*
Ga0163161_1175673223300017792Switchgrass RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Ga0184611_134523113300018067Groundwater SedimentSVAVPRLAGRVGAAAGNSEAMRIYERMEEERLRKLQAKAEANKPEKVTLPKLKFLDEK
Ga0190265_1114883813300018422SoilMPKKPNGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK
Ga0190265_1210993623300018422SoilMKQRATGPAAGNSEAVRILDAREQERKHKLEAKAEAAKPKKVTLPRLKFLDQ
Ga0190275_1048261813300018432SoilLIGSEDIWMTKKPTGVAAGNSEAIRIYERMEEKRQRKAEAKTEANKPKKVTLPRLKFLDQ
Ga0190275_1105610223300018432SoilVIRVEPELVAFLSIEDPMAKKTTGGAAGDSEAIRIFERMEEERQRKAQARAEANKPKKVTLPRIKFLDQK
Ga0190275_1179177323300018432SoilMTKKTTGAAAGDSEAIRIFERMEEERQRKARAKAEANKPKKVTLPRLKFLDQK
Ga0190275_1200816933300018432SoilVSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEASKPKKVTLPRLKFLEKD
Ga0190275_1234019513300018432SoilMAKKTTGAGTGDSEAIRIFDRMEEERQRKAQAKAEANKPKKVTLPRLKFLDEK
Ga0190275_1299518813300018432SoilMTKKPTGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK
Ga0190269_1047083133300018465SoilMSKKPTGVAAGNSEALRIYERMEEERKRKEQTKAEANKPKKVTLPRLKFMEDK
Ga0190269_1173781313300018465SoilMTRKKPTGVAAGNSEAVRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLDPK
Ga0190269_1191183213300018465SoilMSKKPTGVAAGNSEALRIYEKMEEERKRKEQAKAEANKPKRVTLPRLKFMDDK
Ga0190268_1024123523300018466SoilMAKKTTGAAAGDSEAIRIFERMEEERQRKAQAKAEANKPKKVTLPRLKFLDQK
Ga0190268_1141722823300018466SoilMSKKPTGAAAGNSEALRIYERMGEERKQKEQARGEANKPKKVTLPRLKFMEDK
Ga0190270_1015763933300018469SoilMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER
Ga0190270_1033672723300018469SoilMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEANKPKKVTLPKLKFLDEK
Ga0190270_1035262113300018469SoilVSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFMERE
Ga0190270_1038208633300018469SoilMRKKPSGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK
Ga0190270_1092804223300018469SoilMSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSLAKVKFLDEK
Ga0190271_1180126923300018481SoilMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPKLKFLDER
Ga0190271_1274191213300018481SoilMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEANKPKKVTLPKPKFLDEK
Ga0190271_1314972223300018481SoilMTKKPTGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDPK
Ga0190273_1095241713300018920SoilMSKKATGSAAGNSEAIRIYEKMEEERKRKLAAKAEAGRPKKVTLPRLKFMEKE
Ga0173481_1056244813300019356SoilGSSEAATEQRETMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEANKPKKVTLPKLKFLDEK
Ga0190264_1074530123300019377SoilMSKKPTGVAAGNSEAIRIYERMEEERQRKAQAKTEANKPKKVTLPRLKFLDQK
Ga0190267_1048690023300019767SoilLGYADRTTNEDQRMSKRPSGAAAGDSEALRIYERMEEERQRKEQAKAEAKKPKKVTLPKVSFLEEK
Ga0190267_1059359913300019767SoilMSKKASGSGAGDSEAIRIYEKMEEERKRKLATKAEASKPKKVTLPRLKFLDGE
Ga0190267_1084699813300019767SoilMTKKPTGAAVGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Ga0190267_1111051423300019767SoilMSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKPKKVTLPRLKFLEND
Ga0190267_1138901713300019767SoilMAKKKAGAAAGDSEAIRIYERMEEERQRKAQAKAEANKPKKVTLPRLKFLDQK
Ga0196960_1033889523300024426SoilTMSKKPTGAAAGDSEAIRIYERMEEERRRKEQAREEAKKPKKVTLPRLKFLDEK
Ga0207643_1040534513300025908Miscanthus RhizosphereIGGQPKRWTDLMSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKPEKVTLPRLKFMEGE
Ga0207670_1171501023300025936Switchgrass RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTL
Ga0207669_1000943653300025937Miscanthus RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKLQAKAEAKKPKKVTMPKLKFLDEK
Ga0207689_1109247223300025942Miscanthus RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLLKLQAKAEANKPKKVTLPKLKFLDEK
Ga0207678_1136659223300026067Corn RhizosphereMSKKPTGAAAGNSEAIRIYEAMEEERKRKLAAKAEARKPKKVTLPRLKFMEKE
Ga0207683_1024967023300026121Miscanthus RhizosphereVSKKASGSAAGNSEAIRIYEKMEEERKRKLAAKAEASKSKKVTLPRLKFMEGEGE
Ga0209382_1109392723300027909Populus RhizosphereMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLGEK
Ga0209382_1214877923300027909Populus RhizosphereMSKKPTGTAAGNSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Ga0247822_1153290513300028592SoilMSKKLTGAAAGNSEAIRIYERMEEERQRKVQAKAEASKPKKVTLPKLRFLEQR
Ga0308201_1006370033300031091SoilMSKKPTGVAAGNSEALRIYERMEEERQRKEQAKHDAKKSKKVSLARVSFLDK
Ga0310886_1032224023300031562SoilMSKKPTAAAANSEAVRIYERMEEERQRKMQTKAEANQPKKVTLPRLKFLDER
Ga0310900_1077807523300031908SoilMSFESDSEAARIYERMEEERQRKVQTKAEANQPKKVTLPRLKFLDER
Ga0310900_1165332413300031908SoilMTKKPTGAAAGNSEAMRIYERMEEERLRKIQAKAEASKPKKVTLPKLKFLDEK
Ga0307412_1165929023300031911RhizosphereMSKKSTGVAAGNSEAIRIYERLEEERQQKVQANAEASKPKKVTLPKLRFLDRK
Ga0310906_1146832313300032013SoilMSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVSLAKGKFLDEK
Ga0307415_10217969123300032126RhizosphereMSKKPTGAAAGNSEAIRIYERMEEERKQKVQAKAEANKPKKVTLAKLKFLDEK
Ga0247830_1127829513300033551SoilMSKKPTGAAGDSEAMRIYERMEEERLRKLQAKAEANKPKKVTLPKLKFLDEK
Ga0334936_054752_658_8193300034007BiocrustVSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEASKPKKVTLPRLKFLDKD
Ga0334933_075746_342_5033300034136Sub-Biocrust SoilVSKKPTGAAAGNSEAIRIYEAMEQERKRKLEAKAEAAKPKKVTLPRLKFLDKD
Ga0372943_0473135_208_3693300034268SoilMSKKPTGVAAGNSEAIRIYEAMEEERKRKLAAKAEASKPKKVTLPRLKFMDKD
Ga0314792_106712_574_7023300034667SoilMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTL
Ga0314794_047240_96_2543300034669SoilMSKKPTAAAANSEAVRIYERMEEERQRKVQTKAEANQPKKVTLPRLRFLDER


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.